Wall clock time and date at job start Tue Mar 31 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46856 * 2 1 4 4 H 1.08992 * 109.47268 * 54.99597 * 3 2 1 5 5 C 1.52997 * 109.46865 * 294.99406 * 3 2 1 6 6 C 1.53001 * 109.46645 * 175.00031 * 3 2 1 7 7 C 1.50710 * 109.46600 * 184.99736 * 6 3 2 8 8 O 1.21276 * 119.99871 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99620 * 179.97438 * 7 6 3 10 10 C 1.46503 * 119.99791 * 180.27092 * 9 7 6 11 11 C 1.52997 * 109.47099 * 179.72370 * 10 9 7 12 12 H 1.09001 * 110.88632 * 51.12809 * 11 10 9 13 13 C 1.54909 * 111.00791 * 287.19783 * 11 10 9 14 14 N 1.47419 * 104.83335 * 204.91435 * 13 11 10 15 15 C 1.36933 * 125.65097 * 204.08197 * 14 13 11 16 16 H 1.07999 * 119.99966 * 354.84449 * 15 14 13 17 17 C 1.38815 * 120.00478 * 174.84612 * 15 14 13 18 18 N 1.31620 * 119.99411 * 7.04957 * 17 15 14 19 19 Si 1.86798 * 120.00098 * 187.05751 * 17 15 14 20 20 H 1.48499 * 109.47431 * 94.98544 * 19 17 15 21 21 H 1.48504 * 109.46905 * 214.98401 * 19 17 15 22 22 H 1.48493 * 109.47300 * 334.98292 * 19 17 15 23 23 C 1.47022 * 108.70213 * 24.13144 * 14 13 11 24 24 C 1.54319 * 107.27276 * 358.94135 * 23 14 13 25 25 H 1.08989 * 110.72408 * 96.17225 * 24 23 14 26 26 C 1.53002 * 110.87004 * 219.37373 * 24 23 14 27 27 H 1.09002 * 109.46790 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47085 * 300.00486 * 1 2 3 29 29 H 1.08997 * 109.46941 * 60.00555 * 1 2 3 30 30 H 1.08994 * 109.47530 * 239.99798 * 2 1 3 31 31 H 1.08997 * 109.46941 * 119.99445 * 2 1 3 32 32 H 1.09002 * 109.46981 * 60.00312 * 5 3 2 33 33 H 1.09003 * 109.47511 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.47663 * 300.00670 * 5 3 2 35 35 H 1.08997 * 109.47436 * 64.99877 * 6 3 2 36 36 H 1.09000 * 109.47365 * 304.99227 * 6 3 2 37 37 H 0.96996 * 120.00506 * 0.02562 * 9 7 6 38 38 H 1.08995 * 109.47323 * 299.73223 * 10 9 7 39 39 H 1.09005 * 109.46511 * 59.72838 * 10 9 7 40 40 H 1.08996 * 110.36634 * 323.76185 * 13 11 10 41 41 H 1.09002 * 110.36061 * 86.07850 * 13 11 10 42 42 H 0.97001 * 119.99382 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.88379 * 239.51989 * 23 14 13 44 44 H 1.09003 * 109.88161 * 118.35398 * 23 14 13 45 45 H 1.09002 * 109.47034 * 173.60405 * 26 24 23 46 46 H 1.08994 * 109.47251 * 293.60479 * 26 24 23 47 47 H 1.08995 * 109.47330 * 53.60650 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 4.0569 2.8635 0.2492 8 8 3.2660 3.7827 0.2373 9 7 5.3760 3.1109 0.3728 10 6 5.8540 4.4900 0.4988 11 6 7.3782 4.4915 0.6308 12 1 7.8376 3.9023 -0.1629 13 6 7.8153 3.9809 2.0265 14 7 9.1422 4.5830 2.2501 15 6 10.1113 4.0920 3.0837 16 1 9.9030 3.2361 3.7086 17 6 11.3612 4.6942 3.1257 18 7 11.5731 5.8167 2.4718 19 14 12.7426 3.9115 4.1099 20 1 13.5718 3.0664 3.2136 21 1 13.5879 4.9754 4.7089 22 1 12.1662 3.0707 5.1896 23 6 9.2524 5.7988 1.4307 24 6 7.9341 5.9401 0.6409 25 1 7.2474 6.6131 1.1540 26 6 8.2023 6.4269 -0.7846 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 0.5490 2.1251 -1.3970 33 1 1.9990 3.1541 -1.3077 34 1 2.0699 1.5874 -2.1492 35 1 4.0030 0.9836 -0.7596 36 1 3.8571 0.8801 1.0114 37 1 6.0087 2.3757 0.3820 38 1 5.5652 5.0569 -0.3862 39 1 5.4122 4.9481 1.3838 40 1 7.1131 4.3158 2.7899 41 1 7.8873 2.8933 2.0270 42 1 12.4467 6.2374 2.5008 43 1 10.0903 5.7056 0.7398 44 1 9.3942 6.6675 2.0736 45 1 7.2735 6.4102 -1.3549 46 1 8.5914 7.4446 -0.7538 47 1 8.9327 5.7729 -1.2606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101916559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:15 Heat of formation + Delta-G solvation = -46.382997 kcal Electronic energy + Delta-G solvation = -22595.221072 eV Core-core repulsion = 19391.375639 eV Total energy + Delta-G solvation = -3203.845433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.90199 -38.11136 -36.51657 -34.58038 -32.94096 -31.06133 -30.73653 -29.41330 -27.62031 -25.95106 -25.12606 -24.07299 -22.64679 -20.71859 -20.10210 -19.86787 -19.13637 -17.10137 -16.63429 -16.10765 -15.60313 -15.23369 -14.81574 -14.49188 -14.22387 -13.84830 -13.70241 -13.53488 -13.08405 -12.86887 -12.65604 -12.53405 -12.12437 -12.04394 -11.76815 -11.67721 -11.50451 -11.36424 -11.22394 -11.00611 -10.81803 -10.80771 -10.78810 -10.73728 -10.15068 -9.98892 -9.96489 -9.88584 -9.64060 -9.46172 -8.89005 -8.58708 -6.83420 -5.73305 -3.05596 2.72430 3.29325 3.38886 3.44122 3.46282 4.48390 4.58230 4.60908 4.69367 4.99908 5.07245 5.14094 5.22022 5.29010 5.33269 5.40791 5.47673 5.50333 5.52764 5.56302 5.60422 5.76212 5.77272 5.85057 5.87315 5.88325 6.01048 6.03593 6.12875 6.18986 6.24117 6.29433 6.34140 6.48469 6.52816 6.57688 6.63106 6.77364 6.94911 7.55872 7.61049 7.64678 7.83029 8.25292 8.32309 9.21035 9.81667 10.48438 11.38717 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.003093 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.386007 B = 9051.143519 C = 9920.483878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.076 4.076 4 H 0.077 0.923 5 C -0.154 4.154 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.543 6.543 9 N -0.727 5.727 10 C 0.132 3.868 11 C -0.112 4.112 12 H 0.080 0.920 13 C 0.142 3.858 14 N -0.607 5.607 15 C -0.229 4.229 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.183 3.817 24 C -0.111 4.111 25 H 0.067 0.933 26 C -0.134 4.134 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.018 0.982 41 H 0.036 0.964 42 H 0.252 0.748 43 H 0.050 0.950 44 H 0.039 0.961 45 H 0.044 0.956 46 H 0.053 0.947 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.718 -8.769 -7.874 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.211 4.211 6 C -0.179 4.179 7 C 0.296 3.704 8 O -0.421 6.421 9 N -0.378 5.378 10 C 0.009 3.991 11 C -0.132 4.132 12 H 0.098 0.902 13 C 0.016 3.984 14 N -0.333 5.333 15 C -0.358 4.358 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.058 3.942 24 C -0.130 4.130 25 H 0.085 0.915 26 C -0.191 4.191 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.235 0.765 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.036 0.964 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.047 -8.033 -7.807 20.398 hybrid contribution 1.226 -0.726 0.580 1.538 sum -15.821 -8.760 -7.227 19.475 Atomic orbital electron populations 1.21807 0.95820 1.01344 1.02085 1.21601 0.96111 0.96222 1.01891 1.20907 0.92853 0.95839 0.99866 0.90418 1.21993 1.01011 1.02241 0.95856 1.21784 0.97712 0.94267 1.04167 1.20680 0.82180 0.91569 0.75949 1.90652 1.54691 1.46736 1.50055 1.46147 1.07509 1.09840 1.74294 1.21374 0.94019 0.82118 1.01620 1.22668 0.92295 0.98618 0.99625 0.90210 1.21580 0.88429 0.96050 0.92357 1.44473 1.11847 1.26336 1.50627 1.19052 0.90233 1.10780 1.15710 0.90494 1.24824 0.97651 0.97478 1.00437 1.69982 1.22207 1.17953 1.46517 0.86126 0.82351 0.78266 0.79209 1.21640 1.21774 1.20656 1.21230 0.91043 0.89437 0.92502 1.22431 0.99906 0.94131 0.96577 0.91482 1.21687 1.00420 1.01139 0.95898 0.92973 0.92730 0.92428 0.92014 0.92007 0.92857 0.90670 0.93524 0.89055 0.88948 0.76492 0.91794 0.91545 0.96438 0.94603 0.93759 0.93158 0.94250 0.93677 0.92781 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.73 16 2 C -0.12 -0.90 5.40 -26.73 -0.14 -1.04 16 3 C -0.08 -0.71 2.04 -90.62 -0.18 -0.89 16 4 H 0.08 0.85 7.95 -51.93 -0.41 0.44 16 5 C -0.15 -1.52 8.69 37.16 0.32 -1.20 16 6 C -0.14 -1.26 5.18 -27.88 -0.14 -1.41 16 7 C 0.51 6.48 7.55 -10.98 -0.08 6.40 16 8 O -0.54 -8.80 13.96 5.56 0.08 -8.72 16 9 N -0.73 -8.99 5.50 -60.29 -0.33 -9.32 16 10 C 0.13 1.91 5.13 -4.04 -0.02 1.89 16 11 C -0.11 -1.85 2.49 -88.47 -0.22 -2.07 16 12 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 13 C 0.14 2.83 6.65 -2.53 -0.02 2.82 16 14 N -0.61 -15.32 3.39 -170.08 -0.58 -15.89 16 15 C -0.23 -6.36 10.27 -15.06 -0.15 -6.52 16 16 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 17 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 18 N -0.92 -26.92 10.36 55.49 0.57 -26.35 16 19 Si 0.91 21.99 29.56 -169.99 -5.02 16.96 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.18 4.37 4.98 -3.07 -0.02 4.35 16 24 C -0.11 -2.01 3.01 -88.78 -0.27 -2.27 16 25 H 0.07 1.19 8.04 -51.94 -0.42 0.77 16 26 C -0.13 -2.09 9.17 37.16 0.34 -1.75 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.48 6.57 -51.93 -0.34 0.14 16 33 H 0.07 0.94 5.95 -51.93 -0.31 0.63 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 4.20 8.47 -40.82 -0.35 3.85 16 38 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 40 H 0.02 0.36 7.91 -51.93 -0.41 -0.05 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.05 1.33 6.93 -51.93 -0.36 0.97 16 44 H 0.04 1.06 7.61 -51.93 -0.40 0.66 16 45 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -31.45 365.47 -8.87 -40.32 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.77 Total: 0.20 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.32 Total: -2.71 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.33 Total: -51.56 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.45 -8.87 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101916559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.058 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds