Wall clock time and date at job start Tue Mar 31 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47082 * 2 1 4 4 H 1.09003 * 109.47588 * 304.99934 * 3 2 1 5 5 C 1.53002 * 109.47365 * 64.99779 * 3 2 1 6 6 C 1.50697 * 109.47458 * 184.99897 * 3 2 1 7 7 O 1.21281 * 119.99967 * 359.97438 * 6 3 2 8 8 N 1.34780 * 120.00593 * 180.02562 * 6 3 2 9 9 C 1.46497 * 120.00316 * 179.97438 * 8 6 3 10 10 C 1.52996 * 109.46857 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47006 * 179.97438 * 10 9 8 12 12 H 1.09005 * 110.63590 * 51.85907 * 11 10 9 13 13 C 1.54337 * 111.00569 * 288.78250 * 11 10 9 14 14 N 1.47015 * 107.26507 * 219.59972 * 13 11 10 15 15 C 1.36937 * 125.64768 * 178.84634 * 14 13 11 16 16 H 1.07996 * 119.99824 * 340.94235 * 15 14 13 17 17 C 1.38807 * 120.00250 * 161.21713 * 15 14 13 18 18 N 1.31620 * 120.00450 * 157.60272 * 17 15 14 19 19 Si 1.86801 * 119.99892 * 337.60961 * 17 15 14 20 20 H 1.48500 * 109.47209 * 84.53337 * 19 17 15 21 21 H 1.48506 * 109.47109 * 204.53340 * 19 17 15 22 22 H 1.48497 * 109.47176 * 324.53007 * 19 17 15 23 23 C 1.47427 * 108.70568 * 358.58089 * 14 13 11 24 24 C 1.54914 * 104.83009 * 24.35900 * 23 14 13 25 25 H 1.09001 * 111.00215 * 81.09771 * 24 23 14 26 26 C 1.52997 * 111.00290 * 204.91203 * 24 23 14 27 27 H 1.09008 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47295 * 299.99722 * 1 2 3 29 29 H 1.08997 * 109.47296 * 60.00654 * 1 2 3 30 30 H 1.08998 * 109.47308 * 239.99490 * 2 1 3 31 31 H 1.09009 * 109.47105 * 119.99760 * 2 1 3 32 32 H 1.09004 * 109.47121 * 299.99871 * 5 3 2 33 33 H 1.08997 * 109.47180 * 60.00279 * 5 3 2 34 34 H 1.09003 * 109.47113 * 180.02562 * 5 3 2 35 35 H 0.97004 * 119.99395 * 359.97438 * 8 6 3 36 36 H 1.08994 * 109.46946 * 59.99649 * 9 8 6 37 37 H 1.09002 * 109.46746 * 299.99680 * 9 8 6 38 38 H 1.08994 * 109.47558 * 60.00110 * 10 9 8 39 39 H 1.09002 * 109.47253 * 299.99457 * 10 9 8 40 40 H 1.08994 * 109.98977 * 100.12069 * 13 11 10 41 41 H 1.08996 * 109.77507 * 338.95612 * 13 11 10 42 42 H 0.97000 * 120.00315 * 179.97438 * 18 17 15 43 43 H 1.08999 * 110.36487 * 143.19046 * 23 14 13 44 44 H 1.08995 * 110.37008 * 265.51818 * 23 14 13 45 45 H 1.09008 * 109.46786 * 58.54351 * 26 24 23 46 46 H 1.08999 * 109.47282 * 178.54453 * 26 24 23 47 47 H 1.08993 * 109.47586 * 298.55004 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5418 1.4443 -0.1238 7 8 4.1450 0.3952 -0.2037 8 7 4.2149 2.6118 -0.1447 9 6 5.6750 2.6136 -0.2645 10 6 6.1849 4.0561 -0.2647 11 6 7.7098 4.0579 -0.3891 12 1 8.0267 3.4516 -1.2378 13 6 8.3717 3.5558 0.9116 14 7 9.5600 4.3890 1.1463 15 6 10.4127 4.2806 2.2123 16 1 10.0939 3.7703 3.1091 17 6 11.6848 4.8317 2.1423 18 7 12.3352 5.1286 3.2474 19 14 12.4737 5.1521 0.4796 20 1 12.0193 6.4675 -0.0386 21 1 13.9514 5.1615 0.6264 22 1 12.0775 4.0820 -0.4707 23 6 9.6851 5.3563 0.0408 24 6 8.2483 5.5073 -0.5184 25 1 7.6632 6.1977 0.0891 26 6 8.2735 5.9546 -1.9813 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 0.5488 2.1253 1.3969 33 1 2.0698 1.5876 2.1492 34 1 1.9981 3.1544 1.3071 35 1 3.7325 3.4509 -0.0805 36 1 5.9637 2.1264 -1.1958 37 1 6.1092 2.0744 0.5774 38 1 5.8962 4.5436 0.6664 39 1 5.7507 4.5949 -1.1068 40 1 8.6665 2.5123 0.8008 41 1 7.6755 3.6601 1.7437 42 1 13.2242 5.5134 3.1985 43 1 10.0495 6.3135 0.4137 44 1 10.3529 4.9688 -0.7285 45 1 8.8273 5.2267 -2.5744 46 1 7.2528 6.0279 -2.3565 47 1 8.7586 6.9279 -2.0554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102677898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:39 Heat of formation + Delta-G solvation = -44.021782 kcal Electronic energy + Delta-G solvation = -22582.932455 eV Core-core repulsion = 19379.189412 eV Total energy + Delta-G solvation = -3203.743043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.08058 -38.53286 -35.87654 -35.22641 -33.30498 -31.58357 -31.08547 -29.93677 -27.37208 -25.91456 -25.57524 -24.19568 -22.13396 -21.67618 -20.34727 -20.04150 -19.36872 -17.23238 -16.86419 -16.09563 -15.93354 -15.32748 -15.08240 -14.82086 -14.34024 -13.99230 -13.79365 -13.42640 -13.17454 -13.01967 -12.92688 -12.74228 -12.45617 -12.39436 -11.99986 -11.93399 -11.79673 -11.53364 -11.43356 -11.30998 -11.13243 -10.97629 -10.92226 -10.84132 -10.50097 -10.11117 -9.91910 -9.89788 -9.66579 -9.39530 -9.12255 -8.64396 -6.99481 -5.91585 -3.21316 2.55482 3.07134 3.36464 3.50095 3.53011 4.40540 4.49107 4.57761 4.61696 4.76508 4.94942 4.97054 4.99612 5.05833 5.11822 5.17208 5.23419 5.32434 5.43801 5.45631 5.48907 5.55639 5.56380 5.66392 5.75637 5.78204 5.84038 5.86905 5.95105 5.97932 6.06514 6.09849 6.12916 6.17812 6.27331 6.38459 6.43535 6.59016 6.69715 6.85002 6.85491 7.39142 7.76526 8.13688 8.34923 8.87766 9.72701 10.22717 11.24795 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029881 B = 0.003097 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.840920 B = 9039.219820 C = 9484.071493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.111 4.111 4 H 0.095 0.905 5 C -0.146 4.146 6 C 0.512 3.488 7 O -0.540 6.540 8 N -0.730 5.730 9 C 0.116 3.884 10 C -0.116 4.116 11 C -0.094 4.094 12 H 0.076 0.924 13 C 0.139 3.861 14 N -0.610 5.610 15 C -0.240 4.240 16 H 0.091 0.909 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 0.883 3.117 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.277 1.277 23 C 0.116 3.884 24 C -0.100 4.100 25 H 0.078 0.922 26 C -0.139 4.139 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.399 0.601 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.029 0.971 41 H 0.032 0.968 42 H 0.263 0.737 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.493 -2.473 -9.760 25.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.113 0.887 5 C -0.204 4.204 6 C 0.298 3.702 7 O -0.417 6.417 8 N -0.381 5.381 9 C -0.007 4.007 10 C -0.154 4.154 11 C -0.114 4.114 12 H 0.094 0.906 13 C 0.014 3.986 14 N -0.337 5.337 15 C -0.367 4.367 16 H 0.109 0.891 17 C -0.178 4.178 18 N -0.554 5.554 19 Si 0.713 3.287 20 H -0.212 1.212 21 H -0.231 1.231 22 H -0.203 1.203 23 C -0.009 4.009 24 C -0.120 4.120 25 H 0.097 0.903 26 C -0.197 4.197 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.233 0.767 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.822 -3.204 -9.642 24.982 hybrid contribution 0.502 0.630 -0.878 1.192 sum -22.320 -2.574 -10.520 24.809 Atomic orbital electron populations 1.21847 0.95538 1.01899 1.01802 1.21343 0.95252 0.94235 1.03590 1.21358 0.91965 0.99435 1.00494 0.88679 1.21838 1.02286 1.00278 0.95970 1.20701 0.89950 0.83655 0.75849 1.90714 1.70373 1.31445 1.49120 1.46094 1.08279 1.08618 1.75120 1.21474 0.78807 0.97852 1.02550 1.21762 0.96013 0.95083 1.02522 1.22180 0.92884 0.97049 0.99246 0.90555 1.21433 0.89388 0.94186 0.93641 1.44785 1.28703 1.35407 1.24777 1.18652 0.92642 1.34451 0.90966 0.89107 1.24998 0.96567 0.99600 0.96630 1.69844 1.14250 1.45006 1.26322 0.86972 0.77698 0.78172 0.85824 1.21227 1.23099 1.20274 1.22004 0.93920 0.94274 0.90715 1.22355 0.98017 0.95685 0.95916 0.90320 1.21709 1.00999 1.01182 0.95828 0.92482 0.92422 0.92774 0.91159 0.91243 0.91212 0.91903 0.92129 0.76735 0.91578 0.90927 0.90984 0.91486 0.95253 0.94952 0.92764 0.92505 0.95751 0.92792 0.92954 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.16 0.36 -0.57 16 2 C -0.11 -0.89 4.75 -26.74 -0.13 -1.02 16 3 C -0.11 -0.88 2.72 -91.78 -0.25 -1.13 16 4 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.15 -0.94 8.84 37.16 0.33 -0.61 16 6 C 0.51 5.93 7.15 -10.99 -0.08 5.86 16 7 O -0.54 -8.67 15.92 5.56 0.09 -8.58 16 8 N -0.73 -7.29 5.45 -60.30 -0.33 -7.62 16 9 C 0.12 1.40 5.56 -4.05 -0.02 1.38 16 10 C -0.12 -1.32 4.74 -26.73 -0.13 -1.45 16 11 C -0.09 -1.43 2.38 -88.78 -0.21 -1.65 16 12 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 13 C 0.14 2.75 6.25 -3.06 -0.02 2.74 16 14 N -0.61 -15.03 3.21 -170.07 -0.55 -15.58 16 15 C -0.24 -6.96 10.57 -15.06 -0.16 -7.12 16 16 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 17 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 18 N -0.91 -28.56 13.97 55.49 0.78 -27.78 16 19 Si 0.88 23.07 24.27 -169.99 -4.13 18.94 16 20 H -0.29 -7.12 6.49 56.52 0.37 -6.76 16 21 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 22 H -0.28 -7.17 6.66 56.52 0.38 -6.79 16 23 C 0.12 2.54 4.16 -2.52 -0.01 2.53 16 24 C -0.10 -1.63 3.09 -88.47 -0.27 -1.90 16 25 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 26 C -0.14 -1.84 9.29 37.16 0.35 -1.50 16 27 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.68 7.96 -51.93 -0.41 0.27 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.07 0.35 6.57 -51.93 -0.34 0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.33 7.56 -51.93 -0.39 -0.06 16 35 H 0.40 2.81 7.89 -40.82 -0.32 2.49 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.03 7.69 -51.93 -0.40 0.63 16 38 H 0.07 0.83 7.95 -51.93 -0.41 0.41 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.63 7.70 -51.93 -0.40 0.23 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 43 H 0.06 1.34 6.64 -51.93 -0.34 0.99 16 44 H 0.03 0.57 5.47 -51.93 -0.28 0.28 16 45 H 0.05 0.72 8.11 -51.92 -0.42 0.30 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -34.10 361.63 -7.78 -41.88 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -8.75 Total: -2.76 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.34 Total: -3.95 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.10 Total: -50.98 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.13 Total: 18.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.10 -7.78 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102677898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.144 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds