Wall clock time and date at job start Tue Mar 31 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46818 * 2 1 4 4 H 1.09004 * 109.47381 * 54.99651 * 3 2 1 5 5 C 1.53001 * 109.47020 * 294.99893 * 3 2 1 6 6 C 1.50700 * 109.47243 * 175.00083 * 3 2 1 7 7 O 1.21279 * 119.99595 * 359.97438 * 6 3 2 8 8 N 1.34776 * 119.99911 * 179.97438 * 6 3 2 9 9 C 1.46502 * 119.99595 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.46927 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47329 * 179.97438 * 10 9 8 12 12 H 1.09000 * 110.63496 * 51.85607 * 11 10 9 13 13 C 1.54335 * 111.00070 * 288.78062 * 11 10 9 14 14 N 1.47022 * 107.26195 * 219.59791 * 13 11 10 15 15 C 1.36935 * 125.64427 * 178.84992 * 14 13 11 16 16 H 1.08000 * 120.00518 * 359.44761 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.71412 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47361 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46860 * 120.00310 * 19 17 15 22 22 H 1.48500 * 109.47264 * 240.00123 * 19 17 15 23 23 C 1.47426 * 108.70625 * 358.58545 * 14 13 11 24 24 C 1.54912 * 104.82994 * 24.35934 * 23 14 13 25 25 H 1.09002 * 111.00798 * 81.09539 * 24 23 14 26 26 C 1.52999 * 111.00381 * 204.91502 * 24 23 14 27 27 H 1.09004 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47468 * 299.99520 * 1 2 3 29 29 H 1.08997 * 109.47248 * 60.00353 * 1 2 3 30 30 H 1.09001 * 109.47154 * 240.00038 * 2 1 3 31 31 H 1.08997 * 109.47248 * 119.99647 * 2 1 3 32 32 H 1.08996 * 109.47097 * 300.00138 * 5 3 2 33 33 H 1.09000 * 109.47090 * 60.00453 * 5 3 2 34 34 H 1.09003 * 109.47469 * 179.97438 * 5 3 2 35 35 H 0.96996 * 120.00291 * 359.97438 * 8 6 3 36 36 H 1.08996 * 109.47340 * 59.99883 * 9 8 6 37 37 H 1.09001 * 109.46732 * 299.99547 * 9 8 6 38 38 H 1.09009 * 109.47376 * 59.99980 * 10 9 8 39 39 H 1.09003 * 109.47168 * 299.99799 * 10 9 8 40 40 H 1.09007 * 109.99076 * 100.12594 * 13 11 10 41 41 H 1.09002 * 109.78210 * 338.95588 * 13 11 10 42 42 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 43 43 H 1.08998 * 110.36404 * 143.19245 * 23 14 13 44 44 H 1.08995 * 110.36566 * 265.51629 * 23 14 13 45 45 H 1.09005 * 109.46589 * 58.54331 * 26 24 23 46 46 H 1.08990 * 109.47291 * 178.54164 * 26 24 23 47 47 H 1.09000 * 109.47086 * 298.54970 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6351 2.1265 -1.3074 6 6 3.5418 1.4444 0.1238 7 8 4.1449 0.3953 0.2046 8 7 4.2148 2.6120 0.1447 9 6 5.6749 2.6137 0.2645 10 6 6.1848 4.0562 0.2647 11 6 7.7097 4.0582 0.3904 12 1 8.1577 3.4057 -0.3589 13 6 8.1483 3.6348 1.8083 14 7 9.2864 4.4857 2.1852 15 6 9.9535 4.4428 3.3803 16 1 9.6468 3.7448 4.1453 17 6 11.0206 5.3002 3.6108 18 7 11.3908 6.1548 2.6808 19 14 11.9301 5.2421 5.2413 20 1 11.3224 4.2026 6.1104 21 1 13.3579 4.9124 5.0002 22 1 11.8336 6.5648 5.9094 23 6 9.5945 5.3885 1.0612 24 6 8.2687 5.5004 0.2676 25 1 7.5956 6.2217 0.7310 26 6 8.5340 5.8630 -1.1949 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0698 1.5875 -2.1491 33 1 0.5488 2.1252 -1.3969 34 1 1.9980 3.1544 -1.3073 35 1 3.7325 3.4510 0.0798 36 1 6.1092 2.0745 -0.5773 37 1 5.9635 2.1267 1.1960 38 1 5.7505 4.5951 1.1068 39 1 5.8961 4.5438 -0.6665 40 1 8.4524 2.5880 1.8072 41 1 7.3262 3.7834 2.5085 42 1 12.1361 6.7542 2.8419 43 1 9.8977 6.3672 1.4329 44 1 10.3769 4.9606 0.4345 45 1 9.1736 5.1048 -1.6469 46 1 7.5885 5.9097 -1.7349 47 1 9.0293 6.8327 -1.2447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102677900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:42 Heat of formation + Delta-G solvation = -46.216841 kcal Electronic energy + Delta-G solvation = -22494.154751 eV Core-core repulsion = 19290.316523 eV Total energy + Delta-G solvation = -3203.838228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.02911 -38.17264 -35.80839 -35.13372 -33.24322 -31.31022 -30.68014 -29.80445 -26.90788 -25.76960 -25.37370 -24.06222 -22.24150 -21.62556 -20.06358 -19.57859 -19.15165 -17.19255 -16.83208 -16.02611 -15.80876 -15.35193 -14.77250 -14.47632 -14.20983 -13.77769 -13.70211 -13.56940 -13.04117 -12.83534 -12.80438 -12.44696 -12.12205 -12.04801 -11.89436 -11.81909 -11.61632 -11.48363 -11.11797 -11.09065 -10.99910 -10.95360 -10.82668 -10.73594 -10.08917 -9.93991 -9.83197 -9.72872 -9.68325 -9.28687 -9.06110 -8.62132 -6.78454 -5.62036 -3.03261 2.59959 3.13001 3.41418 3.47080 3.49572 4.43320 4.51473 4.52743 4.63583 4.94153 5.02351 5.08196 5.12625 5.18937 5.26330 5.31283 5.47552 5.50450 5.55879 5.56795 5.60150 5.65232 5.69669 5.78176 5.81335 5.95012 5.97961 6.01672 6.08817 6.17158 6.27104 6.29008 6.35650 6.43992 6.58485 6.64101 6.72351 6.86040 7.05090 7.44949 7.58709 7.67649 7.90127 8.18422 8.40316 9.26214 9.87168 10.52727 11.41791 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.003004 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.645322 B = 9319.298660 C =10118.663568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.112 4.112 4 H 0.096 0.904 5 C -0.145 4.145 6 C 0.512 3.488 7 O -0.541 6.541 8 N -0.729 5.729 9 C 0.117 3.883 10 C -0.115 4.115 11 C -0.092 4.092 12 H 0.072 0.928 13 C 0.140 3.860 14 N -0.606 5.606 15 C -0.219 4.219 16 H 0.077 0.923 17 C -0.014 4.014 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.158 3.842 24 C -0.115 4.115 25 H 0.068 0.932 26 C -0.133 4.133 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.399 0.601 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.022 0.978 42 H 0.251 0.749 43 H 0.105 0.895 44 H 0.011 0.989 45 H 0.050 0.950 46 H 0.042 0.958 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.293 -4.473 -9.306 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.114 0.886 5 C -0.203 4.203 6 C 0.298 3.702 7 O -0.418 6.418 8 N -0.380 5.380 9 C -0.006 4.006 10 C -0.154 4.154 11 C -0.112 4.112 12 H 0.090 0.910 13 C 0.014 3.986 14 N -0.332 5.332 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.209 4.209 18 N -0.572 5.572 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.033 3.967 24 C -0.134 4.134 25 H 0.086 0.914 26 C -0.191 4.191 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.232 0.768 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.040 0.960 42 H 0.061 0.939 43 H 0.122 0.878 44 H 0.029 0.971 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.656 -5.151 -9.118 22.272 hybrid contribution 0.363 0.371 0.814 0.965 sum -19.293 -4.780 -8.304 21.541 Atomic orbital electron populations 1.21848 0.95554 1.01876 1.01810 1.21339 0.95234 0.94251 1.03563 1.21366 0.92066 0.99425 1.00490 0.88579 1.21827 1.02269 1.00223 0.95944 1.20687 0.89913 0.83690 0.75891 1.90707 1.70388 1.31462 1.49222 1.46115 1.08397 1.08570 1.74959 1.21494 0.78597 0.98058 1.02474 1.21780 0.96671 0.94756 1.02149 1.22148 0.92644 0.98100 0.98308 0.90984 1.21370 0.90885 0.94020 0.92355 1.44521 1.34400 1.40071 1.14169 1.19141 1.08981 1.16051 0.90599 0.90515 1.24786 0.98903 0.98877 0.98304 1.69815 1.29884 1.25047 1.32440 0.86007 0.79502 0.77231 0.82848 1.20542 1.21785 1.21786 1.21968 0.89806 0.98113 0.86773 1.22629 1.00586 0.94628 0.95597 0.91406 1.21631 1.00138 1.01306 0.95989 0.92500 0.92709 0.92483 0.91344 0.91089 0.92055 0.91230 0.92160 0.76751 0.91624 0.91095 0.91266 0.91649 0.96291 0.96023 0.93862 0.87764 0.97082 0.93093 0.93888 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.11 -0.92 4.75 -26.73 -0.13 -1.05 16 3 C -0.11 -0.93 2.72 -91.77 -0.25 -1.18 16 4 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.15 -0.92 8.84 37.16 0.33 -0.59 16 6 C 0.51 6.22 7.15 -10.99 -0.08 6.14 16 7 O -0.54 -8.95 15.92 5.56 0.09 -8.86 16 8 N -0.73 -7.86 5.45 -60.30 -0.33 -8.19 16 9 C 0.12 1.53 5.56 -4.04 -0.02 1.50 16 10 C -0.12 -1.49 4.74 -26.73 -0.13 -1.62 16 11 C -0.09 -1.57 2.38 -88.77 -0.21 -1.78 16 12 H 0.07 1.21 8.01 -51.93 -0.42 0.79 16 13 C 0.14 2.96 6.25 -3.06 -0.02 2.94 16 14 N -0.61 -15.83 3.39 -170.06 -0.58 -16.40 16 15 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 18 N -0.92 -27.22 10.09 55.49 0.56 -26.66 16 19 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.16 3.86 5.36 -2.53 -0.01 3.84 16 24 C -0.11 -2.11 3.09 -88.47 -0.27 -2.39 16 25 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 26 C -0.13 -2.04 9.29 37.16 0.35 -1.69 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.73 7.95 -51.93 -0.41 0.31 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.35 6.56 -51.93 -0.34 0.01 16 34 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 35 H 0.40 3.14 7.89 -40.82 -0.32 2.82 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.07 7.69 -51.93 -0.40 0.67 16 38 H 0.07 0.90 7.95 -51.92 -0.41 0.49 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.02 0.46 7.70 -51.93 -0.40 0.06 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.10 2.87 5.87 -51.93 -0.31 2.56 16 44 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 45 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 46 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -32.69 366.82 -8.86 -41.55 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.77 Total: -0.98 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -0.34 Total: -3.37 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.35 Total: -51.26 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.69 -8.86 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102677900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.667 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds