Wall clock time and date at job start Tue Mar 31 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47136 * 2 1 4 4 H 1.09005 * 109.47236 * 304.99948 * 3 2 1 5 5 C 1.53001 * 109.47305 * 64.99671 * 3 2 1 6 6 C 1.50694 * 109.47271 * 184.99950 * 3 2 1 7 7 O 1.21283 * 120.00110 * 0.02562 * 6 3 2 8 8 N 1.34776 * 120.00389 * 180.02562 * 6 3 2 9 9 C 1.47422 * 125.64528 * 0.04182 * 8 6 3 10 10 C 1.54914 * 104.83142 * 204.09096 * 9 8 6 11 11 H 1.09002 * 111.00272 * 81.06676 * 10 9 8 12 12 C 1.53004 * 111.00725 * 204.91542 * 10 9 8 13 13 C 1.55151 * 101.58213 * 322.99175 * 10 9 8 14 14 H 1.08999 * 110.87407 * 277.06551 * 13 10 9 15 15 C 1.53003 * 110.72070 * 153.86248 * 13 10 9 16 16 C 1.52999 * 109.47240 * 180.02562 * 15 13 10 17 17 N 1.46498 * 109.47072 * 180.02562 * 16 15 13 18 18 C 1.36943 * 119.99727 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00392 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99586 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00460 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00129 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00122 * 22 20 18 26 26 C 1.47021 * 125.65084 * 179.97438 * 8 6 3 27 27 H 1.09003 * 109.47087 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47343 * 300.00005 * 1 2 3 29 29 H 1.09002 * 109.46965 * 59.99920 * 1 2 3 30 30 H 1.09003 * 109.46839 * 239.99773 * 2 1 3 31 31 H 1.09002 * 109.46965 * 120.00080 * 2 1 3 32 32 H 1.08995 * 109.47277 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47255 * 300.00542 * 5 3 2 34 34 H 1.09005 * 109.46748 * 59.99977 * 5 3 2 35 35 H 1.08996 * 110.37117 * 322.92662 * 9 8 6 36 36 H 1.09006 * 110.36988 * 85.14679 * 9 8 6 37 37 H 1.08996 * 109.47037 * 172.19658 * 12 10 9 38 38 H 1.09006 * 109.46585 * 292.20174 * 12 10 9 39 39 H 1.09001 * 109.46621 * 52.19135 * 12 10 9 40 40 H 1.09009 * 109.46821 * 60.02447 * 15 13 10 41 41 H 1.08994 * 109.47410 * 300.02646 * 15 13 10 42 42 H 1.09000 * 109.46925 * 60.00140 * 16 15 13 43 43 H 1.09007 * 109.47238 * 300.00165 * 16 15 13 44 44 H 0.96998 * 120.00095 * 359.97438 * 17 16 15 45 45 H 0.97001 * 119.99952 * 359.97438 * 21 20 18 46 46 H 1.09001 * 109.88031 * 59.55746 * 26 8 6 47 47 H 1.09000 * 110.01297 * 298.46265 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3952 -0.2046 8 7 4.2150 2.6117 -0.1448 9 6 3.6109 3.9535 -0.0543 10 6 4.6397 4.8976 -0.7252 11 1 4.5451 4.8702 -1.8108 12 6 4.4956 6.3275 -0.2003 13 6 5.9829 4.2700 -0.2679 14 1 6.2518 4.6133 0.7310 15 6 7.0974 4.5895 -1.2663 16 6 8.4064 3.9577 -0.7888 17 7 9.4737 4.2642 -1.7444 18 6 10.7432 3.7998 -1.5252 19 1 10.9577 3.2080 -0.6477 20 6 11.7542 4.0898 -2.4310 21 7 11.4930 4.8115 -3.5002 22 14 13.4861 3.4570 -2.1316 23 1 14.3731 3.9003 -3.2371 24 1 13.4683 1.9730 -2.0768 25 1 13.9936 3.9938 -0.8435 26 6 5.6733 2.7581 -0.2602 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.9989 3.1540 1.3075 33 1 0.5490 2.1252 1.3969 34 1 2.0699 1.5875 2.1492 35 1 2.6638 3.9803 -0.5932 36 1 3.4612 4.2327 0.9887 37 1 5.3142 6.9384 -0.5807 38 1 3.5454 6.7435 -0.5355 39 1 4.5243 6.3191 0.8893 40 1 7.2208 5.6702 -1.3393 41 1 6.8353 4.1869 -2.2446 42 1 8.2829 2.8772 -0.7157 43 1 8.6686 4.3604 0.1896 44 1 9.2809 4.7955 -2.5328 45 1 10.5938 5.1404 -3.6555 46 1 6.0190 2.3043 -1.1890 47 1 6.1643 2.2834 0.5894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103902439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:32 Heat of formation + Delta-G solvation = -51.049832 kcal Electronic energy + Delta-G solvation = -22717.282230 eV Core-core repulsion = 19513.234428 eV Total energy + Delta-G solvation = -3204.047802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.54002 -38.39008 -35.65836 -35.34580 -33.44062 -32.18362 -30.54717 -29.62745 -27.04559 -26.63806 -25.47978 -23.96093 -22.64940 -21.54553 -20.75119 -20.08188 -19.21298 -17.34573 -17.01090 -16.44914 -15.84010 -15.31776 -14.81315 -14.50563 -14.40150 -13.86131 -13.74720 -13.67179 -13.52568 -13.32814 -12.93115 -12.86172 -12.70238 -12.38850 -12.30841 -11.96240 -11.82597 -11.66763 -11.53302 -11.29555 -11.10602 -10.96645 -10.76433 -10.73760 -10.50585 -10.45911 -10.29628 -9.93885 -9.77686 -9.12732 -8.84441 -8.72773 -6.97017 -6.07610 -3.06689 2.55172 2.85232 3.54255 3.58321 3.75454 4.16825 4.28354 4.43820 4.52312 4.61383 4.65494 4.73461 4.97481 5.03383 5.04622 5.16488 5.17463 5.20954 5.27035 5.27953 5.42745 5.46174 5.50413 5.56831 5.62609 5.64644 5.68190 5.72682 5.77658 5.84088 5.93397 5.94488 5.96587 6.02471 6.07361 6.11512 6.22429 6.26598 6.33732 6.77815 6.82171 7.42182 7.84406 8.08542 8.79168 9.26919 10.13200 10.28093 11.41311 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024444 B = 0.003110 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.208082 B = 9001.862911 C = 9821.232400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.106 4.106 4 H 0.095 0.905 5 C -0.152 4.152 6 C 0.528 3.472 7 O -0.539 6.539 8 N -0.618 5.618 9 C 0.103 3.897 10 C -0.103 4.103 11 H 0.087 0.913 12 C -0.140 4.140 13 C -0.088 4.088 14 H 0.086 0.914 15 C -0.116 4.116 16 C 0.157 3.843 17 N -0.746 5.746 18 C -0.330 4.330 19 H 0.064 0.936 20 C -0.047 4.047 21 N -0.945 5.945 22 Si 1.080 2.920 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.295 1.295 26 C 0.110 3.890 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.018 0.982 44 H 0.366 0.634 45 H 0.254 0.746 46 H 0.073 0.927 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.293 -0.707 9.156 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.127 4.127 4 H 0.113 0.887 5 C -0.210 4.210 6 C 0.316 3.684 7 O -0.415 6.415 8 N -0.352 5.352 9 C -0.020 4.020 10 C -0.122 4.122 11 H 0.105 0.895 12 C -0.198 4.198 13 C -0.108 4.108 14 H 0.104 0.896 15 C -0.154 4.154 16 C 0.029 3.971 17 N -0.391 5.391 18 C -0.461 4.461 19 H 0.082 0.918 20 C -0.244 4.244 21 N -0.591 5.591 22 Si 0.911 3.089 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.223 1.223 26 C -0.012 4.012 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.199 0.801 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.394 -1.542 8.717 25.013 hybrid contribution -1.593 0.219 0.414 1.661 sum -24.987 -1.323 9.132 26.636 Atomic orbital electron populations 1.21841 0.95464 1.01906 1.01792 1.21350 0.95293 0.94156 1.03599 1.21298 0.91612 0.99353 1.00472 0.88739 1.21971 1.02200 1.00917 0.95884 1.20408 0.89706 0.82188 0.76055 1.90720 1.70329 1.30710 1.49776 1.48533 1.08107 1.05717 1.72818 1.22528 0.96911 0.81950 1.00573 1.22456 0.94237 0.94710 1.00815 0.89504 1.21698 1.02128 0.94837 1.01127 1.22266 0.94581 0.93298 1.00652 0.89566 1.21744 0.94335 1.01344 0.97956 1.20619 0.86686 0.96755 0.93015 1.42375 1.06232 1.64642 1.25854 1.20048 0.87083 1.30542 1.08465 0.91797 1.25792 1.03787 1.00137 0.94713 1.70883 1.22322 1.37983 1.27946 0.83239 0.75067 0.75319 0.75265 1.21008 1.22243 1.22261 1.22097 0.79736 0.96659 1.02676 0.92443 0.92461 0.92740 0.91089 0.91300 0.91566 0.91227 0.92123 0.90695 0.91003 0.91616 0.92452 0.92359 0.91422 0.91826 0.96195 0.96367 0.80088 0.93465 0.90865 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.11 -0.97 4.75 -26.73 -0.13 -1.10 16 3 C -0.11 -0.96 2.07 -91.78 -0.19 -1.15 16 4 H 0.09 0.72 7.85 -51.93 -0.41 0.31 16 5 C -0.15 -1.06 8.76 37.16 0.33 -0.74 16 6 C 0.53 6.99 7.21 -10.99 -0.08 6.91 16 7 O -0.54 -9.48 16.25 5.56 0.09 -9.39 16 8 N -0.62 -7.48 3.32 -170.52 -0.57 -8.05 16 9 C 0.10 0.89 4.60 -2.53 -0.01 0.88 16 10 C -0.10 -0.98 3.09 -88.47 -0.27 -1.25 16 11 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 12 C -0.14 -1.10 9.31 37.16 0.35 -0.75 16 13 C -0.09 -1.08 2.45 -88.79 -0.22 -1.30 16 14 H 0.09 1.02 8.04 -51.93 -0.42 0.60 16 15 C -0.12 -1.80 4.72 -26.73 -0.13 -1.93 16 16 C 0.16 3.24 6.11 -4.04 -0.02 3.21 16 17 N -0.75 -19.51 5.60 -59.91 -0.34 -19.85 16 18 C -0.33 -9.70 9.99 -15.06 -0.15 -9.86 16 19 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.05 -1.41 5.50 -17.43 -0.10 -1.51 16 21 N -0.95 -29.96 13.70 55.49 0.76 -29.20 16 22 Si 1.08 26.64 29.92 -169.99 -5.09 21.56 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.30 -6.93 7.11 56.52 0.40 -6.52 16 26 C 0.11 1.54 5.62 -3.06 -0.02 1.52 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.76 7.95 -51.93 -0.41 0.34 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.41 4.98 -51.93 -0.26 0.15 16 33 H 0.07 0.37 6.56 -51.93 -0.34 0.03 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.51 7.36 -51.93 -0.38 0.13 16 36 H 0.07 0.53 6.91 -51.93 -0.36 0.17 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 40 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 41 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 42 H 0.02 0.43 7.49 -51.93 -0.39 0.04 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.37 9.69 6.50 -40.82 -0.27 9.42 16 45 H 0.25 7.90 6.77 -40.82 -0.28 7.63 16 46 H 0.07 1.18 7.76 -51.93 -0.40 0.78 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -34.94 363.99 -8.46 -43.40 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.52 Total: 3.75 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.28 Total: -7.70 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.14 Total: -57.09 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -5.09 Total: 21.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.94 -8.46 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103902439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.653 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds