Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47559 * 2 1 4 4 H 1.09001 * 109.46640 * 54.99763 * 3 2 1 5 5 C 1.52998 * 109.46725 * 295.00222 * 3 2 1 6 6 C 1.50698 * 109.47239 * 174.99798 * 3 2 1 7 7 O 1.21276 * 120.00290 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99673 * 179.97438 * 6 3 2 9 9 C 1.46497 * 119.99913 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.47342 * 176.55956 * 9 8 6 11 11 N 1.46500 * 109.47348 * 54.63311 * 10 9 8 12 12 C 1.36936 * 119.99501 * 62.74422 * 11 10 9 13 13 H 1.07999 * 120.00502 * 354.56174 * 12 11 10 14 14 C 1.38811 * 119.99955 * 174.56330 * 12 11 10 15 15 N 1.31624 * 120.00249 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00186 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47069 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.46801 * 120.00129 * 16 14 12 19 19 H 1.48496 * 109.47310 * 240.00038 * 16 14 12 20 20 C 1.52997 * 109.47606 * 174.63743 * 10 9 8 21 21 C 1.52998 * 109.47606 * 179.97438 * 20 10 9 22 22 C 1.53005 * 109.46750 * 299.99918 * 21 20 10 23 23 C 1.52995 * 109.47310 * 60.00161 * 22 21 20 24 24 C 1.53003 * 109.46763 * 299.99631 * 23 22 21 25 25 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46711 * 300.00024 * 1 2 3 27 27 H 1.09000 * 109.47185 * 60.00079 * 1 2 3 28 28 H 1.08998 * 109.47290 * 240.00127 * 2 1 3 29 29 H 1.09000 * 109.47185 * 119.99920 * 2 1 3 30 30 H 1.09001 * 109.47187 * 299.99206 * 5 3 2 31 31 H 1.09002 * 109.47315 * 59.99804 * 5 3 2 32 32 H 1.09001 * 109.46760 * 179.97438 * 5 3 2 33 33 H 0.96999 * 120.00523 * 0.02562 * 8 6 3 34 34 H 1.08999 * 109.47114 * 56.55750 * 9 8 6 35 35 H 1.09004 * 109.47047 * 296.55860 * 9 8 6 36 36 H 0.96994 * 120.00614 * 243.02379 * 11 10 9 37 37 H 0.96997 * 120.00406 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.46902 * 300.00359 * 20 10 9 39 39 H 1.09004 * 109.47394 * 59.99652 * 20 10 9 40 40 H 1.09002 * 109.47377 * 180.02562 * 21 20 10 41 41 H 1.09004 * 109.47028 * 59.99428 * 21 20 10 42 42 H 1.08998 * 109.47380 * 299.99590 * 22 21 20 43 43 H 1.09004 * 109.46647 * 179.97438 * 22 21 20 44 44 H 1.08997 * 109.47673 * 179.97438 * 23 22 21 45 45 H 1.08998 * 109.47366 * 59.99419 * 23 22 21 46 46 H 1.08997 * 109.47493 * 299.99804 * 24 23 22 47 47 H 1.09004 * 109.47108 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5420 1.4442 0.1239 7 8 4.1451 0.3951 0.2038 8 7 4.2150 2.6117 0.1448 9 6 5.6751 2.6134 0.2647 10 6 6.1922 4.0507 0.1780 11 7 5.5159 4.8746 1.1830 12 6 5.6727 4.5963 2.5146 13 1 6.2222 3.7188 2.8219 14 6 5.1254 5.4421 3.4695 15 7 4.4552 6.5113 3.0951 16 14 5.3387 5.0622 5.2860 17 1 6.1254 3.8124 5.4413 18 1 6.0557 6.1831 5.9452 19 1 4.0049 4.8894 5.9156 20 6 7.7002 4.0667 0.4363 21 6 8.2175 5.5039 0.3490 22 6 7.9331 6.0644 -1.0460 23 6 6.4252 6.0485 -1.3044 24 6 5.9079 4.6112 -1.2170 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0699 1.5875 -2.1492 31 1 0.5489 2.1252 -1.3969 32 1 1.9983 3.1543 -1.3072 33 1 3.7327 3.4509 0.0805 34 1 6.1066 2.0226 -0.5433 35 1 5.9614 2.1815 1.2236 36 1 4.9538 5.6146 0.9051 37 1 4.0731 7.1026 3.7624 38 1 7.9028 3.6669 1.4299 39 1 8.2035 3.4538 -0.3114 40 1 9.2919 5.5152 0.5326 41 1 7.7142 6.1173 1.0965 42 1 8.4363 5.4511 -1.7935 43 1 8.3012 7.0885 -1.1081 44 1 6.2224 6.4482 -2.2979 45 1 5.9220 6.6618 -0.5568 46 1 6.4110 3.9979 -1.9645 47 1 4.8337 4.5998 -1.4015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115414172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = -63.656289 kcal Electronic energy + Delta-G solvation = -23987.571566 eV Core-core repulsion = 20782.977107 eV Total energy + Delta-G solvation = -3204.594459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.68612 -38.53241 -35.26750 -34.38002 -33.25167 -31.22918 -30.23614 -29.65416 -28.45499 -25.70018 -24.68387 -23.78928 -22.19052 -21.41283 -20.30160 -19.36640 -18.28868 -17.16843 -16.73125 -15.56132 -15.35176 -14.96758 -14.52585 -14.24200 -13.94112 -13.80914 -13.60617 -13.40388 -13.08738 -12.81570 -12.62964 -12.09913 -12.01730 -11.88229 -11.70583 -11.59067 -11.50682 -11.41921 -11.10061 -10.89640 -10.76618 -10.70577 -10.60079 -10.53591 -10.14425 -10.03725 -9.79864 -9.62886 -9.32482 -9.22796 -8.87512 -8.35826 -7.00898 -5.81240 -3.09762 3.15434 3.40369 3.48592 3.49006 3.77835 4.56261 4.86265 5.02542 5.03362 5.21013 5.27084 5.29589 5.39145 5.48305 5.53526 5.56355 5.61533 5.68087 5.75835 5.84219 5.89479 5.96133 5.97733 5.99051 6.05290 6.10970 6.13268 6.17683 6.22184 6.31978 6.33500 6.43175 6.46030 6.52937 6.60907 6.80625 6.82716 6.83581 7.00272 7.14424 7.21131 7.71743 8.14293 8.37085 8.78311 9.49702 10.02747 10.39346 11.40859 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.006320 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.827767 B = 4429.501878 C = 5795.105276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 C -0.113 4.113 4 H 0.096 0.904 5 C -0.143 4.143 6 C 0.512 3.488 7 O -0.560 6.560 8 N -0.700 5.700 9 C 0.115 3.885 10 C 0.191 3.809 11 N -0.709 5.709 12 C -0.227 4.227 13 H 0.069 0.931 14 C -0.009 4.009 15 N -0.932 5.932 16 Si 0.899 3.101 17 H -0.281 1.281 18 H -0.293 1.293 19 H -0.294 1.294 20 C -0.114 4.114 21 C -0.109 4.109 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.113 4.113 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.402 0.598 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.384 0.616 37 H 0.253 0.747 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.476 -4.849 -10.489 11.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.141 4.141 3 C -0.134 4.134 4 H 0.114 0.886 5 C -0.200 4.200 6 C 0.297 3.703 7 O -0.440 6.440 8 N -0.349 5.349 9 C -0.012 4.012 10 C 0.099 3.901 11 N -0.351 5.351 12 C -0.358 4.358 13 H 0.087 0.913 14 C -0.205 4.205 15 N -0.580 5.580 16 Si 0.730 3.270 17 H -0.207 1.207 18 H -0.220 1.220 19 H -0.221 1.221 20 C -0.154 4.154 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.151 4.151 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.238 0.762 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.219 0.781 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.978 -5.619 -10.258 11.862 hybrid contribution -0.269 0.528 1.138 1.283 sum -2.246 -5.092 -9.119 10.683 Atomic orbital electron populations 1.21848 0.95856 1.01495 1.01846 1.21300 0.94938 0.94635 1.03192 1.21332 0.92809 0.98874 1.00433 0.88565 1.21798 1.01887 1.00425 0.95903 1.20537 0.89647 0.83869 0.76214 1.90632 1.70445 1.31747 1.51137 1.45798 1.08186 1.08374 1.72581 1.21843 0.79672 0.99016 1.00631 1.19821 0.91961 0.89213 0.89131 1.42441 1.55829 1.35440 1.01418 1.19121 1.28501 1.05738 0.82467 0.91303 1.24659 1.01201 0.97145 0.97502 1.69652 1.40805 1.15236 1.32325 0.86240 0.77220 0.77318 0.86186 1.20662 1.22002 1.22080 1.21786 0.96176 0.96519 1.00939 1.21374 0.98933 0.97229 0.97156 1.21469 0.96123 0.99783 0.97598 1.21472 0.96191 0.96975 1.00659 1.21681 1.00262 0.96502 0.96626 0.92793 0.92695 0.92560 0.91637 0.91288 0.92389 0.91563 0.92062 0.76170 0.93090 0.92004 0.78093 0.93685 0.91799 0.93786 0.93814 0.89821 0.93266 0.93058 0.93332 0.90721 0.92348 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.10 -1.31 4.75 -26.73 -0.13 -1.44 16 3 C -0.11 -1.54 2.72 -91.77 -0.25 -1.79 16 4 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 5 C -0.14 -1.59 8.84 37.16 0.33 -1.26 16 6 C 0.51 8.94 7.15 -10.99 -0.08 8.86 16 7 O -0.56 -11.63 15.92 5.56 0.09 -11.54 16 8 N -0.70 -12.12 4.98 -60.30 -0.30 -12.42 16 9 C 0.11 2.10 4.36 -4.04 -0.02 2.08 16 10 C 0.19 3.38 0.41 -131.82 -0.05 3.33 16 11 N -0.71 -15.23 3.40 -47.23 -0.16 -15.39 16 12 C -0.23 -5.69 8.70 -15.06 -0.13 -5.82 16 13 H 0.07 1.77 6.77 -52.49 -0.36 1.41 16 14 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 15 N -0.93 -26.15 13.07 55.49 0.73 -25.43 16 16 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 C -0.11 -1.98 4.52 -26.73 -0.12 -2.10 16 21 C -0.11 -1.85 5.77 -26.73 -0.15 -2.00 16 22 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 23 C -0.12 -1.73 5.75 -26.73 -0.15 -1.89 16 24 C -0.11 -1.71 4.65 -26.73 -0.12 -1.83 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.98 7.96 -51.93 -0.41 0.57 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.62 6.57 -51.93 -0.34 0.28 16 32 H 0.06 0.67 7.56 -51.93 -0.39 0.28 16 33 H 0.40 6.76 6.81 -40.82 -0.28 6.48 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.30 7.50 -51.93 -0.39 0.91 16 36 H 0.38 8.86 6.64 -40.82 -0.27 8.59 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.06 1.22 7.23 -51.93 -0.38 0.85 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.71 7.61 -51.93 -0.39 1.31 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.30 6.93 -51.93 -0.36 0.94 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.06 0.84 7.28 -51.93 -0.38 0.46 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -28.46 358.40 -8.55 -37.00 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -8.50 Total: 12.71 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.78 Total: -7.18 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.26 Total: -53.24 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.46 -8.55 -37.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115414172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.654 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds