Wall clock time and date at job start Tue Mar 31 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.46884 * 2 1 4 4 H 1.09001 * 109.47030 * 305.45979 * 3 2 1 5 5 C 1.53004 * 109.47487 * 185.46465 * 3 2 1 6 6 C 1.53000 * 109.47120 * 64.99309 * 5 3 2 7 7 C 1.53869 * 110.03332 * 185.00381 * 6 5 3 8 8 C 1.54273 * 106.64245 * 240.69501 * 7 6 5 9 9 C 1.54967 * 104.15825 * 336.44524 * 8 7 6 10 10 C 1.54275 * 110.02974 * 67.83961 * 6 5 3 11 11 C 1.50698 * 109.47374 * 65.45961 * 3 2 1 12 12 O 1.21280 * 119.99708 * 35.67107 * 11 3 2 13 13 N 1.34772 * 120.00151 * 215.66224 * 11 3 2 14 14 C 1.46503 * 120.00006 * 184.91566 * 13 11 3 15 15 C 1.52996 * 109.47309 * 180.02562 * 14 13 11 16 16 N 1.46503 * 109.47309 * 180.02562 * 15 14 13 17 17 C 1.36933 * 120.00114 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00120 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00292 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99459 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00425 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46951 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47240 * 119.99966 * 21 19 17 24 24 H 1.48500 * 109.47279 * 240.00476 * 21 19 17 25 25 H 1.09002 * 109.47666 * 53.82217 * 1 2 3 26 26 H 1.09005 * 109.47086 * 173.81768 * 1 2 3 27 27 H 1.09002 * 109.47682 * 293.82077 * 1 2 3 28 28 H 1.08998 * 109.47400 * 240.00064 * 2 1 3 29 29 H 1.09001 * 109.47152 * 119.99231 * 2 1 3 30 30 H 1.09001 * 109.46494 * 305.00001 * 5 3 2 31 31 H 1.08998 * 109.47354 * 185.00158 * 5 3 2 32 32 H 1.09004 * 110.06139 * 306.42458 * 6 5 3 33 33 H 1.09005 * 110.03498 * 0.02562 * 7 6 5 34 34 H 1.09003 * 110.03288 * 121.38523 * 7 6 5 35 35 H 1.08992 * 110.48477 * 95.09122 * 8 7 6 36 36 H 1.09000 * 110.48430 * 217.73736 * 8 7 6 37 37 H 1.08998 * 110.72055 * 279.57345 * 9 8 7 38 38 H 1.08996 * 110.92555 * 156.29257 * 9 8 7 39 39 H 1.09002 * 110.48100 * 261.57383 * 10 6 5 40 40 H 1.09001 * 110.48322 * 24.08335 * 10 6 5 41 41 H 0.96998 * 120.00169 * 4.92772 * 13 11 3 42 42 H 1.08995 * 109.47664 * 300.00890 * 14 13 11 43 43 H 1.09009 * 109.46814 * 60.00487 * 14 13 11 44 44 H 1.08995 * 109.47468 * 300.00991 * 15 14 13 45 45 H 1.09011 * 109.46558 * 60.00949 * 15 14 13 46 46 H 0.96998 * 119.99825 * 0.02562 * 16 15 14 47 47 H 0.96999 * 119.99696 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5989 1.9838 -0.8371 5 6 3.5637 1.4449 -0.1374 6 6 3.9535 0.8777 -1.5039 7 6 5.4839 0.7575 -1.6076 8 6 5.9186 1.6533 -2.7860 9 6 4.6496 1.7606 -3.6688 10 6 3.5104 1.8432 -2.6226 11 6 1.6509 2.1129 1.2924 12 8 1.6403 1.4778 2.3256 13 7 1.3152 3.4181 1.3002 14 6 1.0418 4.0966 2.5695 15 6 0.6865 5.5600 2.2994 16 7 0.4136 6.2386 3.5688 17 6 0.0716 7.5645 3.5767 18 1 0.0025 8.1099 2.6470 19 6 -0.1864 8.2077 4.7794 20 7 -0.1017 7.5432 5.9124 21 14 -0.6537 10.0162 4.7901 22 1 -0.6799 10.5290 3.3966 23 1 -1.9975 10.1767 5.4014 24 1 0.3443 10.7807 5.5806 25 1 -0.3634 0.6066 -0.8295 26 1 -0.3633 -1.0217 -0.1107 27 1 -0.3634 0.4150 0.9401 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 4.0003 0.8295 0.6493 31 1 3.9350 2.4658 -0.0483 32 1 3.4915 -0.0989 -1.6489 33 1 5.9491 1.1028 -0.6842 34 1 5.7649 -0.2776 -1.8021 35 1 6.2175 2.6379 -2.4266 36 1 6.7320 1.1856 -3.3409 37 1 4.5376 0.8737 -4.2926 38 1 4.6769 2.6613 -4.2820 39 1 2.5672 1.5143 -3.0588 40 1 3.4177 2.8581 -2.2360 41 1 1.2544 3.9082 0.4654 42 1 0.2070 3.6069 3.0709 43 1 1.9261 4.0484 3.2051 44 1 1.5210 6.0499 1.7978 45 1 -0.1981 5.6077 1.6641 46 1 0.4753 5.7487 4.4037 47 1 -0.2816 7.9927 6.7529 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134683687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:36 Heat of formation + Delta-G solvation = -68.071292 kcal Electronic energy + Delta-G solvation = -22323.916264 eV Core-core repulsion = 19119.130356 eV Total energy + Delta-G solvation = -3204.785908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.12300 -38.55651 -35.85945 -34.93783 -33.79900 -31.40147 -31.15095 -29.01985 -28.42097 -27.10559 -24.00978 -23.51168 -22.32342 -21.39527 -21.01635 -19.90809 -19.39126 -17.33605 -17.08203 -16.26217 -15.63761 -15.30848 -15.08368 -14.63089 -14.40898 -14.26204 -13.99349 -13.59646 -13.48329 -13.20877 -13.14661 -12.83853 -12.62135 -12.24004 -11.65289 -11.50068 -11.40198 -11.37920 -11.28930 -11.10630 -11.02851 -10.93799 -10.84212 -10.82190 -10.76746 -10.69784 -10.44802 -10.08541 -9.82095 -9.49720 -8.97573 -8.78837 -6.99419 -5.79871 -3.10520 2.78428 3.32634 3.41864 3.47508 3.49715 4.27113 4.33911 4.38441 4.58017 4.60730 4.77570 4.82937 5.08832 5.13841 5.16529 5.22585 5.25057 5.35532 5.39885 5.43368 5.50239 5.52301 5.55581 5.56663 5.62085 5.66810 5.79246 5.79793 5.85891 5.87725 5.91381 5.97658 6.00266 6.05107 6.12877 6.16628 6.19244 6.21162 6.52669 6.71359 6.77990 7.66001 7.68736 8.37270 8.40780 9.49078 10.04101 10.38880 11.42851 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.002909 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.046362 B = 9623.891722 C =10424.868538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C -0.105 4.105 4 H 0.087 0.913 5 C -0.101 4.101 6 C -0.092 4.092 7 C -0.122 4.122 8 C -0.126 4.126 9 C -0.126 4.126 10 C -0.123 4.123 11 C 0.515 3.485 12 O -0.542 6.542 13 N -0.724 5.724 14 C 0.110 3.890 15 C 0.145 3.855 16 N -0.730 5.730 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.910 3.090 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.398 0.602 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.024 0.976 45 H 0.024 0.976 46 H 0.386 0.614 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.726 -15.889 -20.308 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.147 4.147 3 C -0.126 4.126 4 H 0.106 0.894 5 C -0.138 4.138 6 C -0.110 4.110 7 C -0.160 4.160 8 C -0.163 4.163 9 C -0.163 4.163 10 C -0.160 4.160 11 C 0.301 3.699 12 O -0.418 6.418 13 N -0.376 5.376 14 C -0.014 4.014 15 C 0.017 3.983 16 N -0.375 5.375 17 C -0.374 4.374 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.741 3.259 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.232 0.768 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.041 0.959 46 H 0.220 0.780 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.686 -16.161 -19.580 26.833 hybrid contribution -0.320 1.192 0.014 1.235 sum 8.366 -14.969 -19.566 26.017 Atomic orbital electron populations 1.21815 0.95707 1.01684 1.02111 1.21475 0.96065 0.94327 1.02834 1.21397 0.97648 0.97835 0.95731 0.89431 1.21637 0.92832 1.02017 0.97356 1.21847 0.95556 0.99402 0.94209 1.22219 0.95197 0.99822 0.98746 1.22372 0.97513 0.99976 0.96447 1.22502 0.94923 1.01485 0.97425 1.22496 0.98150 0.99739 0.95623 1.20593 0.76611 0.81735 0.90969 1.90690 1.52697 1.63945 1.34508 1.46024 1.70443 1.10661 1.10425 1.21561 1.01384 0.93431 0.84987 1.20752 0.97539 0.88994 0.91019 1.42206 1.83715 1.09134 1.02443 1.19239 1.39156 0.86098 0.92919 0.90991 1.24785 1.02407 0.98403 0.95308 1.69681 1.55615 1.35613 0.96973 0.86078 0.77771 0.84774 0.77302 1.20498 1.21771 1.21766 0.92904 0.92611 0.92346 0.91144 0.90641 0.91051 0.91295 0.90510 0.91593 0.91950 0.91632 0.91968 0.91729 0.91719 0.91686 0.91264 0.76806 0.91367 0.91477 0.95863 0.95852 0.78016 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.63 37.15 0.36 -1.20 16 2 C -0.11 -1.06 5.06 -26.73 -0.14 -1.19 16 3 C -0.10 -1.04 2.12 -91.77 -0.19 -1.23 16 4 H 0.09 0.72 7.31 -51.93 -0.38 0.34 16 5 C -0.10 -0.91 3.79 -26.73 -0.10 -1.01 16 6 C -0.09 -0.66 2.80 -89.50 -0.25 -0.92 16 7 C -0.12 -0.87 6.45 -25.61 -0.17 -1.03 16 8 C -0.13 -0.84 6.84 -25.03 -0.17 -1.01 16 9 C -0.13 -0.80 6.91 -24.70 -0.17 -0.98 16 10 C -0.12 -0.83 5.46 -25.07 -0.14 -0.96 16 11 C 0.52 7.30 5.96 -10.99 -0.07 7.23 16 12 O -0.54 -9.94 16.04 5.56 0.09 -9.85 16 13 N -0.72 -10.03 5.55 -60.29 -0.33 -10.37 16 14 C 0.11 1.93 5.79 -4.04 -0.02 1.91 16 15 C 0.15 2.88 6.37 -4.04 -0.03 2.85 16 16 N -0.73 -18.77 5.60 -59.91 -0.34 -19.11 16 17 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 18 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 21 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.73 7.48 -51.93 -0.39 0.34 16 28 H 0.07 0.54 6.22 -51.93 -0.32 0.22 16 29 H 0.07 0.86 7.67 -51.93 -0.40 0.47 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 32 H 0.08 0.54 6.23 -51.93 -0.32 0.21 16 33 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.49 7.76 -51.93 -0.40 0.09 16 41 H 0.40 4.38 8.43 -40.82 -0.34 4.03 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.39 10.52 7.67 -40.82 -0.31 10.21 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -32.47 370.22 -9.36 -41.83 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -8.73 Total: 7.27 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.33 Total: -4.99 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.05 Total: -57.22 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.47 -9.36 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134683687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.239 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds