Wall clock time and date at job start Tue Mar 31 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 C 1.52999 * 109.47269 * 119.99846 * 2 1 3 5 5 H 1.09000 * 109.47486 * 300.00335 * 4 2 1 6 6 C 1.53006 * 109.46623 * 60.00164 * 4 2 1 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47592 * 300.00035 * 7 6 4 9 9 H 1.09000 * 109.47140 * 300.00346 * 8 7 6 10 10 C 1.50699 * 109.47265 * 180.02562 * 8 7 6 11 11 O 1.21282 * 120.00041 * 240.00247 * 10 8 7 12 12 N 1.34779 * 120.00033 * 60.00305 * 10 8 7 13 13 C 1.46500 * 120.00165 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.46993 * 179.97438 * 13 12 10 15 15 N 1.46500 * 109.46993 * 180.02562 * 14 13 12 16 16 C 1.36940 * 120.00330 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99840 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00336 * 180.02562 * 16 15 14 19 19 N 1.31614 * 119.99697 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99811 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47134 * 89.99809 * 20 18 16 22 22 H 1.48503 * 109.46838 * 209.99714 * 20 18 16 23 23 H 1.48496 * 109.47351 * 329.99372 * 20 18 16 24 24 C 1.52996 * 109.47165 * 60.00300 * 8 7 6 25 25 C 1.52997 * 109.47269 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.47140 * 299.99606 * 1 2 3 27 27 H 1.09001 * 109.47375 * 59.99624 * 1 2 3 28 28 H 1.09002 * 109.47497 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47140 * 240.00393 * 2 1 3 30 30 H 1.08996 * 109.47261 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47377 * 300.00375 * 3 2 1 32 32 H 1.09000 * 109.46866 * 60.00225 * 3 2 1 33 33 H 1.08993 * 109.46955 * 300.00075 * 6 4 2 34 34 H 1.09000 * 109.47050 * 59.99904 * 6 4 2 35 35 H 1.09000 * 109.47160 * 60.00369 * 7 6 4 36 36 H 1.09002 * 109.46719 * 180.02562 * 7 6 4 37 37 H 0.96996 * 119.99850 * 359.97438 * 12 10 8 38 38 H 1.08996 * 109.47197 * 300.00087 * 13 12 10 39 39 H 1.09000 * 109.47175 * 59.99845 * 13 12 10 40 40 H 1.09000 * 109.47380 * 299.99451 * 14 13 12 41 41 H 1.09004 * 109.47552 * 60.00060 * 14 13 12 42 42 H 0.97004 * 120.00364 * 0.02562 * 15 14 13 43 43 H 0.96997 * 120.00006 * 180.02562 * 19 18 16 44 44 H 1.08992 * 109.47534 * 180.02562 * 24 8 7 45 45 H 1.08996 * 109.47134 * 59.99508 * 24 8 7 46 46 H 1.09000 * 109.47140 * 300.00547 * 25 4 2 47 47 H 1.09001 * 109.47230 * 59.99691 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2492 7 6 2.0405 -2.8851 2.4981 8 6 3.5705 -2.8851 2.4975 9 1 3.9335 -3.3988 1.6073 10 6 4.0733 -3.5963 3.7274 11 8 4.7708 -3.0073 4.5258 12 7 3.7479 -4.8868 3.9400 13 6 4.2371 -5.5783 5.1353 14 6 3.7265 -7.0205 5.1349 15 7 4.2153 -7.7118 6.3305 16 6 3.8837 -9.0227 6.5472 17 1 3.2614 -9.5468 5.8368 18 6 4.3463 -9.6776 7.6803 19 7 5.1041 -9.0387 8.5462 20 14 3.8945 -11.4659 7.9754 21 1 4.9176 -12.3441 7.3532 22 1 3.8393 -11.7280 9.4361 23 1 2.5673 -11.7473 7.3716 24 6 4.0805 -1.4427 2.4976 25 6 3.5700 -0.7206 1.2496 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9565 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.4400 -2.1637 1.2491 34 1 1.8933 -2.6775 0.3591 35 1 1.6775 -2.3715 3.3883 36 1 1.6776 -3.9130 2.4978 37 1 3.1897 -5.3577 3.3016 38 1 5.3271 -5.5783 5.1345 39 1 3.8745 -5.0650 6.0259 40 1 2.6365 -7.0201 5.1361 41 1 4.0888 -7.5340 4.2443 42 1 4.7732 -7.2408 6.9692 43 1 5.4278 -9.4964 9.3379 44 1 5.1704 -1.4426 2.4968 45 1 3.7174 -0.9290 3.3877 46 1 3.9337 -1.2341 0.3595 47 1 3.9330 0.3072 1.2497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135734079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:59 Heat of formation + Delta-G solvation = -70.139558 kcal Electronic energy + Delta-G solvation = -22164.335615 eV Core-core repulsion = 18959.460021 eV Total energy + Delta-G solvation = -3204.875595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.30663 -38.64580 -35.74015 -35.07678 -33.82106 -31.41125 -31.02979 -30.04743 -27.62513 -27.42410 -24.37038 -23.26824 -22.58206 -21.46887 -20.94348 -20.03206 -19.68617 -17.41660 -16.93788 -16.09576 -15.53284 -15.12318 -14.76392 -14.56792 -14.45907 -14.15618 -14.08167 -13.61668 -13.53839 -13.16488 -13.14979 -12.87117 -12.64273 -12.54323 -12.03755 -11.83925 -11.60016 -11.45012 -11.37275 -11.29520 -11.10090 -10.97386 -10.81945 -10.80066 -10.66747 -10.43863 -10.13104 -10.09927 -9.81549 -9.51007 -8.97050 -8.78804 -6.99367 -5.79557 -3.10278 2.78553 3.32258 3.42228 3.47390 3.49178 4.29506 4.34373 4.45687 4.58026 4.66228 4.72712 4.82052 5.01003 5.09035 5.15488 5.22017 5.27818 5.29699 5.30621 5.35880 5.47854 5.50416 5.53438 5.57402 5.62183 5.70731 5.74888 5.78793 5.81371 5.89165 5.90607 5.94752 5.98035 6.05438 6.08838 6.16772 6.17843 6.28714 6.52370 6.71492 6.77682 7.65594 7.67808 8.37297 8.39991 9.49230 10.04304 10.39047 11.43049 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041970 B = 0.002421 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.977372 B =11561.901426 C =12049.414617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.084 4.084 5 H 0.071 0.929 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.105 4.105 9 H 0.095 0.905 10 C 0.512 3.488 11 O -0.543 6.543 12 N -0.724 5.724 13 C 0.110 3.890 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.099 4.099 25 C -0.115 4.115 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.398 0.602 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 19.337 -20.055 29.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.103 4.103 5 H 0.089 0.911 6 C -0.151 4.151 7 C -0.149 4.149 8 C -0.126 4.126 9 H 0.113 0.887 10 C 0.298 3.702 11 O -0.420 6.420 12 N -0.375 5.375 13 C -0.014 4.014 14 C 0.017 3.983 15 N -0.375 5.375 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.137 4.137 25 C -0.153 4.153 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.763 19.585 -19.462 28.681 hybrid contribution -0.274 -1.188 0.167 1.231 sum -8.037 18.397 -19.295 27.845 Atomic orbital electron populations 1.21907 0.95403 1.01878 1.01555 1.21143 0.95616 0.96120 0.98173 1.21906 1.01278 0.96020 1.01537 1.21248 0.95414 0.95652 0.97960 0.91091 1.21640 1.00610 0.95182 0.97665 1.21539 0.92965 1.01221 0.99175 1.21350 0.97086 0.97549 0.96640 0.88720 1.20655 0.80241 0.81739 0.87571 1.90700 1.37997 1.66143 1.47134 1.45977 1.53510 1.12061 1.25949 1.21562 0.99568 0.93330 0.86896 1.20753 0.96664 0.89100 0.91798 1.42200 1.61572 1.10847 1.22872 1.19194 1.26119 0.87403 1.04765 0.91042 1.24791 1.00295 0.98522 0.97319 1.69667 1.38924 1.36219 1.13056 0.86140 0.77924 0.84694 0.77102 1.21626 1.21687 1.20711 1.21323 1.00982 0.92997 0.98352 1.21667 0.95006 1.00617 0.97991 0.92749 0.93009 0.92320 0.91331 0.92320 0.93011 0.92752 0.91323 0.91770 0.91313 0.91319 0.76769 0.91400 0.91402 0.95853 0.95856 0.78008 0.93359 0.91261 0.91231 0.92003 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.84 37.16 0.33 -0.54 16 2 C -0.09 -0.56 2.51 -90.62 -0.23 -0.79 16 3 C -0.15 -0.88 8.84 37.16 0.33 -0.55 16 4 C -0.08 -0.58 1.78 -90.62 -0.16 -0.74 16 5 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 6 C -0.11 -0.77 4.85 -26.73 -0.13 -0.90 16 7 C -0.11 -0.93 5.10 -26.73 -0.14 -1.07 16 8 C -0.10 -1.05 2.53 -91.78 -0.23 -1.28 16 9 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 10 C 0.51 7.32 7.15 -10.99 -0.08 7.24 16 11 O -0.54 -10.10 15.98 5.56 0.09 -10.01 16 12 N -0.72 -10.02 5.45 -60.30 -0.33 -10.35 16 13 C 0.11 1.94 5.79 -4.04 -0.02 1.92 16 14 C 0.15 2.88 6.37 -4.04 -0.03 2.85 16 15 N -0.73 -18.78 5.60 -59.91 -0.34 -19.12 16 16 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.10 -0.98 4.49 -26.75 -0.12 -1.10 16 25 C -0.12 -0.86 4.85 -26.75 -0.13 -0.99 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.33 6.43 -51.93 -0.33 -0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.53 7.56 -51.93 -0.39 0.13 16 37 H 0.40 4.36 7.89 -40.82 -0.32 4.03 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.39 10.53 7.67 -40.82 -0.31 10.21 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 45 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -32.50 364.72 -8.90 -41.40 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.67 Total: 6.38 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.85 Total: -3.45 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.06 Total: -57.21 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.50 -8.90 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135734079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.738 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds