Wall clock time and date at job start Tue Mar 31 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 C 1.52999 * 109.47269 * 119.99846 * 2 1 3 5 5 H 1.09000 * 109.47486 * 300.00335 * 4 2 1 6 6 C 1.53006 * 109.46623 * 60.00164 * 4 2 1 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47592 * 300.00035 * 7 6 4 9 9 H 1.09000 * 109.47140 * 300.00346 * 8 7 6 10 10 C 1.50699 * 109.47265 * 180.02562 * 8 7 6 11 11 O 1.21282 * 120.00041 * 240.00247 * 10 8 7 12 12 N 1.34779 * 120.00033 * 60.00305 * 10 8 7 13 13 C 1.46500 * 120.00165 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.46993 * 179.97438 * 13 12 10 15 15 N 1.46500 * 109.46993 * 180.02562 * 14 13 12 16 16 C 1.36940 * 120.00330 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99840 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00336 * 180.02562 * 16 15 14 19 19 N 1.31614 * 119.99697 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99811 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47134 * 89.99809 * 20 18 16 22 22 H 1.48503 * 109.46838 * 209.99714 * 20 18 16 23 23 H 1.48496 * 109.47351 * 329.99372 * 20 18 16 24 24 C 1.52996 * 109.47165 * 60.00300 * 8 7 6 25 25 C 1.52997 * 109.47269 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.47140 * 299.99606 * 1 2 3 27 27 H 1.09001 * 109.47375 * 59.99624 * 1 2 3 28 28 H 1.09002 * 109.47497 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47140 * 240.00393 * 2 1 3 30 30 H 1.08996 * 109.47261 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47377 * 300.00375 * 3 2 1 32 32 H 1.09000 * 109.46866 * 60.00225 * 3 2 1 33 33 H 1.08993 * 109.46955 * 300.00075 * 6 4 2 34 34 H 1.09000 * 109.47050 * 59.99904 * 6 4 2 35 35 H 1.09000 * 109.47160 * 60.00369 * 7 6 4 36 36 H 1.09002 * 109.46719 * 180.02562 * 7 6 4 37 37 H 0.96996 * 119.99850 * 359.97438 * 12 10 8 38 38 H 1.08996 * 109.47197 * 300.00087 * 13 12 10 39 39 H 1.09000 * 109.47175 * 59.99845 * 13 12 10 40 40 H 1.09000 * 109.47380 * 299.99451 * 14 13 12 41 41 H 1.09004 * 109.47552 * 60.00060 * 14 13 12 42 42 H 0.97004 * 120.00364 * 0.02562 * 15 14 13 43 43 H 0.96997 * 120.00006 * 180.02562 * 19 18 16 44 44 H 1.08992 * 109.47534 * 180.02562 * 24 8 7 45 45 H 1.08996 * 109.47134 * 59.99508 * 24 8 7 46 46 H 1.09000 * 109.47140 * 300.00547 * 25 4 2 47 47 H 1.09001 * 109.47230 * 59.99691 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5300 -2.1638 1.2492 7 6 2.0405 -2.8851 2.4981 8 6 3.5705 -2.8851 2.4975 9 1 3.9335 -3.3988 1.6073 10 6 4.0733 -3.5963 3.7274 11 8 4.7708 -3.0073 4.5258 12 7 3.7479 -4.8868 3.9400 13 6 4.2371 -5.5783 5.1353 14 6 3.7265 -7.0205 5.1349 15 7 4.2153 -7.7118 6.3305 16 6 3.8837 -9.0227 6.5472 17 1 3.2614 -9.5468 5.8368 18 6 4.3463 -9.6776 7.6803 19 7 5.1041 -9.0387 8.5462 20 14 3.8945 -11.4659 7.9754 21 1 4.9176 -12.3441 7.3532 22 1 3.8393 -11.7280 9.4361 23 1 2.5673 -11.7473 7.3716 24 6 4.0805 -1.4427 2.4976 25 6 3.5700 -0.7206 1.2496 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9565 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.4400 -2.1637 1.2491 34 1 1.8933 -2.6775 0.3591 35 1 1.6775 -2.3715 3.3883 36 1 1.6776 -3.9130 2.4978 37 1 3.1897 -5.3577 3.3016 38 1 5.3271 -5.5783 5.1345 39 1 3.8745 -5.0650 6.0259 40 1 2.6365 -7.0201 5.1361 41 1 4.0888 -7.5340 4.2443 42 1 4.7732 -7.2408 6.9692 43 1 5.4278 -9.4964 9.3379 44 1 5.1704 -1.4426 2.4968 45 1 3.7174 -0.9290 3.3877 46 1 3.9337 -1.2341 0.3595 47 1 3.9330 0.3072 1.2497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135734079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:59 Heat of formation + Delta-G solvation = -90.769808 kcal Electronic energy + Delta-G solvation = -22165.230210 eV Core-core repulsion = 18959.460021 eV Total energy + Delta-G solvation = -3205.770189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30287 -39.49010 -37.34433 -35.80622 -35.50409 -33.18662 -31.80249 -30.93482 -29.16478 -27.93341 -25.85781 -24.54798 -23.31656 -23.00867 -21.85009 -20.64584 -20.55503 -19.33708 -18.15076 -17.13951 -16.79344 -16.51010 -16.18890 -15.60989 -15.24159 -15.14311 -15.06885 -14.99566 -14.70435 -14.36856 -14.19372 -14.04095 -13.26725 -13.10273 -13.05215 -13.00605 -12.72144 -12.66746 -12.57030 -12.43444 -12.20677 -12.09206 -11.97844 -11.95335 -11.86558 -11.54295 -11.24072 -11.14497 -11.00187 -10.71982 -10.63694 -10.13884 -9.08173 -7.97843 -5.29585 1.47832 1.50499 1.58924 1.62592 2.12306 2.57557 3.36255 3.57536 3.70473 3.78214 3.96239 4.02969 4.10566 4.12898 4.19606 4.20902 4.39981 4.44255 4.47492 4.56406 4.60744 4.65359 4.70925 4.74728 4.88350 4.91524 5.01382 5.07844 5.09380 5.11610 5.15729 5.19600 5.21622 5.29017 5.30728 5.35087 5.39104 5.44823 5.48165 5.50001 5.62885 5.70908 6.22768 6.55364 7.25094 7.28801 8.00521 8.23593 9.25879 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041970 B = 0.002421 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.977372 B =11561.901426 C =12049.414617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.082 4.082 5 H 0.059 0.941 6 C -0.109 4.109 7 C -0.108 4.108 8 C -0.094 4.094 9 H 0.120 0.880 10 C 0.509 3.491 11 O -0.591 6.591 12 N -0.711 5.711 13 C 0.127 3.873 14 C 0.150 3.850 15 N -0.748 5.748 16 C -0.248 4.248 17 H 0.084 0.916 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.981 3.019 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.265 1.265 24 C -0.098 4.098 25 C -0.108 4.108 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.416 0.584 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.764 18.795 -22.653 31.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.101 4.101 5 H 0.077 0.923 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.115 4.115 9 H 0.138 0.862 10 C 0.297 3.703 11 O -0.471 6.471 12 N -0.363 5.363 13 C 0.002 3.998 14 C 0.023 3.977 15 N -0.391 5.391 16 C -0.380 4.380 17 H 0.102 0.898 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.809 3.191 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.189 1.189 24 C -0.136 4.136 25 C -0.145 4.145 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.376 19.043 -22.137 30.669 hybrid contribution 0.209 -0.939 0.935 1.341 sum -9.167 18.103 -21.202 29.348 Atomic orbital electron populations 1.21905 0.95120 1.02155 1.01541 1.21109 0.95808 0.96004 0.97740 1.21914 1.01305 0.96064 1.01555 1.21219 0.94828 0.96002 0.98039 0.92286 1.21626 1.01139 0.94696 0.97121 1.21551 0.91360 1.02146 0.99563 1.21384 0.98262 0.96941 0.94931 0.86172 1.21513 0.79132 0.81422 0.88263 1.90684 1.40205 1.67126 1.49112 1.45800 1.53450 1.12046 1.25039 1.21126 0.98399 0.92385 0.87917 1.20845 0.97164 0.89672 0.90009 1.42450 1.61646 1.10666 1.24385 1.19660 1.25230 0.88414 1.04648 0.89820 1.25711 1.00912 1.03043 0.97471 1.69841 1.40715 1.37976 1.13631 0.85032 0.78256 0.79339 0.76449 1.21242 1.22320 1.18946 1.21299 1.00079 0.93283 0.98914 1.21619 0.95457 1.00564 0.96883 0.93276 0.92563 0.91889 0.90687 0.92296 0.92472 0.93295 0.90426 0.90365 0.92838 0.90023 0.74638 0.93142 0.93217 0.94426 0.94404 0.79530 0.93902 0.92748 0.93317 0.90727 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.84 71.98 0.64 -0.78 16 2 C -0.09 -0.87 2.51 -10.79 -0.03 -0.90 16 3 C -0.15 -1.53 8.84 71.98 0.64 -0.90 16 4 C -0.08 -0.98 1.78 -10.79 -0.02 -1.00 16 5 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 6 C -0.11 -1.17 4.85 30.60 0.15 -1.02 16 7 C -0.11 -1.58 5.10 30.59 0.16 -1.43 16 8 C -0.09 -1.73 2.53 -11.54 -0.03 -1.76 16 9 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 10 C 0.51 14.32 7.15 87.66 0.63 14.95 16 11 O -0.59 -22.62 15.98 -3.04 -0.05 -22.67 16 12 N -0.71 -18.85 5.45 -463.07 -2.52 -21.37 16 13 C 0.13 4.46 5.79 86.38 0.50 4.96 16 14 C 0.15 5.78 6.37 86.38 0.55 6.33 16 15 N -0.75 -38.55 5.60 -343.44 -1.92 -40.47 16 16 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 19 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 20 Si 0.98 45.91 29.55 68.60 2.03 47.93 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 C -0.10 -1.91 4.49 30.58 0.14 -1.77 16 25 C -0.11 -1.43 4.85 30.58 0.15 -1.29 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.54 6.43 -2.39 -0.02 0.52 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.59 6.43 -2.39 -0.02 0.57 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.75 6.43 -2.39 -0.02 0.73 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.00 7.56 -2.39 -0.02 0.98 16 37 H 0.42 8.04 7.89 -92.71 -0.73 7.31 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 42 H 0.37 20.86 7.67 -92.71 -0.71 20.15 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 45 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.07 0.91 6.43 -2.39 -0.02 0.90 16 Total: -1.00 -70.70 364.72 2.08 -68.62 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.51 Total: 29.79 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 4.77 Total: -1.67 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -4.16 Total: -122.00 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -70.70 2.08 -68.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135734079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.155 kcal (2) G-P(sol) polarization free energy of solvation -70.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds