Wall clock time and date at job start Tue Mar 31 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47299 * 2 1 4 4 C 1.53004 * 109.46894 * 239.99999 * 2 1 3 5 5 N 1.46496 * 109.47017 * 293.37007 * 4 2 1 6 6 C 1.34787 * 120.00005 * 275.40132 * 5 4 2 7 7 O 1.21276 * 120.00059 * 180.02562 * 6 5 4 8 8 C 1.50695 * 119.99862 * 359.97438 * 6 5 4 9 9 C 1.50703 * 109.47259 * 179.97438 * 8 6 5 10 10 H 1.07997 * 119.99359 * 0.02562 * 9 8 6 11 11 C 1.37872 * 120.00173 * 180.02562 * 9 8 6 12 12 N 1.31517 * 119.99861 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00029 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47381 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47403 * 120.00046 * 13 11 9 16 16 H 1.48506 * 109.47516 * 240.00386 * 13 11 9 17 17 C 1.46498 * 120.00314 * 95.40484 * 5 4 2 18 18 H 1.08998 * 109.46734 * 354.49825 * 17 5 4 19 19 C 1.53000 * 109.47698 * 114.50102 * 17 5 4 20 20 C 1.52994 * 109.47281 * 180.02562 * 19 17 5 21 21 C 1.52998 * 109.47013 * 299.99360 * 20 19 17 22 22 H 1.08997 * 109.47788 * 300.00597 * 21 20 19 23 23 N 1.46906 * 109.47177 * 179.97438 * 21 20 19 24 24 C 1.53001 * 109.46607 * 60.00602 * 21 20 19 25 25 C 1.52997 * 109.47293 * 299.99344 * 24 21 20 26 26 H 1.08992 * 109.47205 * 295.49578 * 1 2 3 27 27 H 1.08999 * 109.47221 * 175.48926 * 1 2 3 28 28 H 1.09007 * 109.46881 * 55.49291 * 1 2 3 29 29 H 1.08990 * 109.47168 * 120.00327 * 2 1 3 30 30 H 1.08999 * 109.47561 * 59.99551 * 3 2 1 31 31 H 1.09003 * 109.47521 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47304 * 300.00020 * 3 2 1 33 33 H 1.09000 * 109.47433 * 53.37159 * 4 2 1 34 34 H 1.09001 * 109.47139 * 173.36882 * 4 2 1 35 35 H 1.09004 * 109.47389 * 300.00614 * 8 6 5 36 36 H 1.09004 * 109.46689 * 60.00272 * 8 6 5 37 37 H 0.97003 * 120.00032 * 179.97438 * 12 11 9 38 38 H 1.09006 * 109.46550 * 300.00247 * 19 17 5 39 39 H 1.09006 * 109.47128 * 59.99722 * 19 17 5 40 40 H 1.08997 * 109.47331 * 60.00237 * 20 19 17 41 41 H 1.09007 * 109.47038 * 179.97438 * 20 19 17 42 42 H 1.00899 * 110.99683 * 180.02562 * 23 21 20 43 43 H 1.00896 * 110.99696 * 303.96256 * 23 21 20 44 44 H 1.08998 * 109.47561 * 59.99647 * 24 21 20 45 45 H 1.09004 * 109.47312 * 179.97438 * 24 21 20 46 46 H 1.08998 * 109.47065 * 300.00607 * 25 24 21 47 47 H 1.08997 * 109.47429 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6862 -2.1408 -1.1722 6 6 2.4810 -2.9979 -0.5011 7 8 2.1883 -4.1732 -0.4377 8 6 3.7338 -2.4961 0.1694 9 6 4.4366 -3.6452 0.8453 10 1 4.0180 -4.6394 0.7940 11 6 5.6138 -3.4272 1.5290 12 7 6.1232 -2.2163 1.5918 13 14 6.4852 -4.8516 2.3662 14 1 5.7132 -6.1013 2.1481 15 1 7.8466 -5.0049 1.7929 16 1 6.5890 -4.5813 3.8227 17 6 0.4686 -2.6288 -1.8245 18 1 -0.0901 -1.7847 -2.2290 19 6 0.8454 -3.5822 -2.9602 20 6 -0.4263 -4.0913 -3.6418 21 6 -1.2910 -4.8321 -2.6199 22 1 -0.7328 -5.6763 -2.2153 23 7 -2.5123 -5.3204 -3.2742 24 6 -1.6679 -3.8786 -1.4842 25 6 -0.3963 -3.3695 -0.8025 26 1 -0.3633 0.4423 0.9275 27 1 -0.3633 -1.0245 -0.0808 28 1 -0.3633 0.5822 -0.8469 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.5830 -0.2805 -2.1353 34 1 3.1235 -0.6197 -1.3106 35 1 4.3938 -2.0547 -0.5775 36 1 3.4714 -1.7433 0.9127 37 1 6.9512 -2.0628 2.0732 38 1 1.4612 -3.0544 -3.6885 39 1 1.4041 -4.4263 -2.5557 40 1 -0.9845 -3.2471 -4.0464 41 1 -0.1578 -4.7703 -4.4512 42 1 -3.1009 -5.8132 -2.6194 43 1 -3.0148 -4.5634 -3.7130 44 1 -2.2262 -3.0343 -1.8887 45 1 -2.2844 -4.4061 -0.7563 46 1 0.1620 -4.2137 -0.3980 47 1 -0.6647 -2.6905 0.0068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143204842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:00 Heat of formation + Delta-G solvation = -66.737888 kcal Electronic energy + Delta-G solvation = -24084.570403 eV Core-core repulsion = 20879.842316 eV Total energy + Delta-G solvation = -3204.728087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02327 -37.76244 -36.27345 -33.98154 -32.87389 -32.01865 -30.69350 -29.04502 -27.31476 -26.86610 -25.35206 -23.58552 -22.55763 -21.58089 -20.48701 -19.70253 -18.10578 -16.58134 -16.10932 -15.85513 -15.47773 -14.95210 -14.73888 -14.41675 -14.29547 -14.10508 -13.49390 -13.38460 -12.98647 -12.80368 -12.66493 -12.40749 -12.11004 -12.07435 -11.98323 -11.69353 -11.39600 -11.25354 -11.05062 -10.98219 -10.81357 -10.73279 -10.69840 -10.58369 -10.42718 -10.16233 -10.07616 -9.88851 -9.17243 -8.72189 -8.41089 -8.36123 -7.98039 -6.03701 -4.02441 3.34014 3.41250 3.48920 3.63496 3.72518 4.47664 4.50889 4.75298 4.85096 5.04831 5.14068 5.17745 5.25495 5.32560 5.34954 5.38466 5.48128 5.60818 5.62483 5.63347 5.75123 5.79482 5.86339 5.90718 5.97260 6.00690 6.04883 6.11560 6.15701 6.22532 6.31367 6.35193 6.41825 6.51440 6.58455 6.62869 6.72079 7.06106 7.19402 7.32279 7.34439 7.39198 7.98700 8.04735 8.42823 9.08517 9.28823 9.62570 11.08618 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014748 B = 0.005592 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.144014 B = 5006.090197 C = 6377.629826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.143 4.143 4 C 0.121 3.879 5 N -0.625 5.625 6 C 0.519 3.481 7 O -0.538 6.538 8 C 0.006 3.994 9 C -0.505 4.505 10 H 0.075 0.925 11 C 0.055 3.945 12 N -0.900 5.900 13 Si 0.897 3.103 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.158 3.842 18 H 0.071 0.929 19 C -0.134 4.134 20 C -0.103 4.103 21 C 0.088 3.912 22 H 0.084 0.916 23 N -0.847 5.847 24 C -0.144 4.144 25 C -0.140 4.140 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.260 0.740 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.338 0.662 43 H 0.335 0.665 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.099 0.901 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 4.968 -7.884 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.201 4.201 4 C -0.002 4.002 5 N -0.359 5.359 6 C 0.311 3.689 7 O -0.415 6.415 8 C -0.033 4.033 9 C -0.544 4.544 10 H 0.093 0.907 11 C -0.146 4.146 12 N -0.540 5.540 13 Si 0.725 3.275 14 H -0.195 1.195 15 H -0.211 1.211 16 H -0.211 1.211 17 C 0.054 3.946 18 H 0.089 0.911 19 C -0.173 4.173 20 C -0.141 4.141 21 C -0.023 4.023 22 H 0.102 0.898 23 N -0.374 5.374 24 C -0.184 4.184 25 C -0.179 4.179 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.341 3.967 -8.244 17.011 hybrid contribution 0.012 0.269 1.223 1.252 sum -14.329 4.236 -7.021 16.510 Atomic orbital electron populations 1.21991 0.95776 1.02207 1.00854 1.21603 0.95750 0.96387 1.00053 1.21753 1.01668 0.95504 1.01136 1.21560 1.01208 0.80576 0.96890 1.48330 1.24282 1.08241 1.55076 1.21918 0.85141 0.85529 0.76350 1.90449 1.73298 1.17528 1.60199 1.19290 0.89102 0.98680 0.96197 1.21229 1.06447 0.95112 1.31575 0.90731 1.24985 0.97224 0.95841 0.96504 1.69968 1.20729 1.20233 1.43118 0.86432 0.79296 0.82770 0.78966 1.19528 1.21068 1.21088 1.20864 0.85657 0.95718 0.92361 0.91074 1.21931 0.97352 1.00878 0.97140 1.21444 0.95791 0.99180 0.97688 1.21523 0.91266 0.96801 0.92704 0.89775 1.58979 1.09846 1.31669 1.36925 1.22314 0.98114 0.99393 0.98586 1.22078 0.95434 1.02442 0.97922 0.93266 0.91805 0.93398 0.90015 0.92852 0.92030 0.93170 0.91483 0.89924 0.93794 0.93469 0.93065 0.92115 0.89665 0.92687 0.91352 0.84942 0.85315 0.92728 0.92327 0.88308 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.88 37.16 0.33 -1.51 16 2 C -0.12 -1.65 2.99 -90.62 -0.27 -1.92 16 3 C -0.14 -1.72 9.19 37.15 0.34 -1.38 16 4 C 0.12 1.77 4.56 -4.04 -0.02 1.75 16 5 N -0.62 -10.64 2.19 -166.11 -0.36 -11.00 16 6 C 0.52 11.46 7.06 -10.98 -0.08 11.38 16 7 O -0.54 -13.21 11.69 5.56 0.07 -13.15 16 8 C 0.01 0.16 4.06 -29.04 -0.12 0.04 16 9 C -0.51 -14.52 8.92 -34.44 -0.31 -14.83 16 10 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 11 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 13 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 14 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 C 0.16 2.30 1.49 -67.93 -0.10 2.19 16 18 H 0.07 0.90 7.56 -51.93 -0.39 0.51 16 19 C -0.13 -1.96 5.21 -26.73 -0.14 -2.10 16 20 C -0.10 -1.24 5.46 -26.73 -0.15 -1.38 16 21 C 0.09 1.05 3.25 -67.71 -0.22 0.83 16 22 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 23 N -0.85 -8.45 9.25 -4.66 -0.04 -8.50 16 24 C -0.14 -1.67 5.49 -26.73 -0.15 -1.82 16 25 C -0.14 -2.07 4.83 -26.73 -0.13 -2.20 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.84 4.06 -51.93 -0.21 0.62 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.39 6.68 -51.93 -0.35 1.04 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.07 0.81 7.85 -51.93 -0.41 0.41 16 34 H 0.08 1.31 6.66 -51.93 -0.35 0.97 16 35 H 0.04 1.13 7.41 -51.93 -0.38 0.75 16 36 H 0.05 1.21 6.60 -51.93 -0.34 0.86 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.54 6.58 -51.93 -0.34 1.20 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.34 2.95 9.04 -39.29 -0.36 2.59 16 43 H 0.33 2.84 8.98 -39.29 -0.35 2.49 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 1.83 5.79 -51.93 -0.30 1.53 16 47 H 0.06 0.91 5.93 -51.93 -0.31 0.60 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -30.49 351.91 -8.65 -39.14 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -8.23 Total: 6.03 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.10 Total: -9.48 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.33 Total: -44.96 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.07 Total: -13.15 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.49 -8.65 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.600 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds