Wall clock time and date at job start Tue Mar 31 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47299 * 2 1 4 4 H 1.09000 * 109.46481 * 304.70477 * 3 2 1 5 5 C 1.53002 * 109.47067 * 64.69975 * 3 2 1 6 6 C 1.50698 * 109.47210 * 184.70365 * 3 2 1 7 7 O 1.21284 * 119.99666 * 351.19486 * 6 3 2 8 8 N 1.34777 * 119.99932 * 171.18602 * 6 3 2 9 9 C 1.46919 * 120.62960 * 356.32364 * 8 6 3 10 10 C 1.53186 * 108.77467 * 233.57955 * 9 8 6 11 11 C 1.53046 * 109.31636 * 305.36715 * 10 9 8 12 12 C 1.53042 * 109.53557 * 61.36240 * 11 10 9 13 13 C 1.46924 * 120.62633 * 176.03814 * 8 6 3 14 14 H 1.08999 * 109.58939 * 246.20532 * 13 8 6 15 15 C 1.52999 * 109.59019 * 6.63393 * 13 8 6 16 16 N 1.46502 * 109.47275 * 182.71003 * 15 13 8 17 17 C 1.46492 * 120.00024 * 264.12522 * 16 15 13 18 18 C 1.36942 * 119.99608 * 84.12732 * 16 15 13 19 19 H 1.07990 * 120.00394 * 23.81501 * 18 16 15 20 20 C 1.38819 * 119.99231 * 203.82047 * 18 16 15 21 21 N 1.31608 * 120.00311 * 10.21885 * 20 18 16 22 22 Si 1.86805 * 119.99330 * 190.21989 * 20 18 16 23 23 H 1.48497 * 109.47130 * 94.98701 * 22 20 18 24 24 H 1.48499 * 109.46565 * 214.98343 * 22 20 18 25 25 H 1.48492 * 109.47397 * 334.98182 * 22 20 18 26 26 H 1.08999 * 109.47428 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47078 * 300.00726 * 1 2 3 28 28 H 1.08999 * 109.46922 * 60.00281 * 1 2 3 29 29 H 1.08994 * 109.47078 * 239.99274 * 2 1 3 30 30 H 1.09008 * 109.46890 * 119.99443 * 2 1 3 31 31 H 1.09009 * 109.46866 * 183.17428 * 5 3 2 32 32 H 1.08994 * 109.47646 * 303.17512 * 5 3 2 33 33 H 1.08999 * 109.46577 * 63.17983 * 5 3 2 34 34 H 1.08997 * 109.59357 * 353.37065 * 9 8 6 35 35 H 1.09004 * 109.58493 * 113.65636 * 9 8 6 36 36 H 1.08997 * 109.50001 * 65.31918 * 10 9 8 37 37 H 1.08996 * 109.50191 * 185.38263 * 10 9 8 38 38 H 1.08995 * 109.46084 * 181.38351 * 11 10 9 39 39 H 1.08999 * 109.46047 * 301.36173 * 11 10 9 40 40 H 1.09005 * 109.49448 * 58.58781 * 12 11 10 41 41 H 1.09003 * 109.49813 * 178.65379 * 12 11 10 42 42 H 1.09004 * 109.46879 * 302.70631 * 15 13 8 43 43 H 1.08998 * 109.47342 * 62.70732 * 15 13 8 44 44 H 1.09002 * 109.47231 * 91.42632 * 17 16 15 45 45 H 1.08998 * 109.47314 * 211.42235 * 17 16 15 46 46 H 1.09002 * 109.47337 * 331.42509 * 17 16 15 47 47 H 0.97003 * 120.00155 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6095 1.9800 -0.8449 5 6 1.6289 2.1288 1.3042 6 6 3.5426 1.4441 -0.1165 7 8 4.1584 0.4027 -0.0315 8 7 4.2018 2.6027 -0.3153 9 6 3.4656 3.8605 -0.5007 10 6 3.9394 4.5224 -1.7985 11 6 5.4607 4.6845 -1.7579 12 6 6.1195 3.3074 -1.6496 13 6 5.6705 2.6327 -0.3445 14 1 6.0415 3.1994 0.5094 15 6 6.2139 1.2035 -0.2905 16 7 7.6781 1.2388 -0.2544 17 6 8.4450 1.0911 -1.4938 18 6 8.3297 1.4098 0.9378 19 1 7.8421 1.1408 1.8631 20 6 9.6169 1.9290 0.9569 21 7 10.1357 2.4426 -0.1382 22 14 10.6128 1.8988 2.5371 23 1 11.4794 0.6930 2.5530 24 1 11.4584 3.1172 2.6126 25 1 9.6923 1.8622 3.7017 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.9431 3.1724 1.2803 32 1 0.5459 2.0780 1.4158 33 1 2.1050 1.6252 2.1455 34 1 2.3976 3.6528 -0.5653 35 1 3.6585 4.5244 0.3420 36 1 3.6627 3.8976 -2.6476 37 1 3.4713 5.5015 -1.8995 38 1 5.7978 5.1776 -2.6697 39 1 5.7386 5.2887 -0.8943 40 1 5.8221 2.6940 -2.5002 41 1 7.2035 3.4220 -1.6449 42 1 5.8404 0.7063 0.6048 43 1 5.8853 0.6561 -1.1739 44 1 8.6358 2.0749 -1.9224 45 1 9.3933 0.5989 -1.2778 46 1 7.8768 0.4896 -2.2033 47 1 11.0353 2.8051 -0.1249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157573870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:12 Heat of formation + Delta-G solvation = -14.090652 kcal Electronic energy + Delta-G solvation = -24300.808550 eV Core-core repulsion = 21098.363418 eV Total energy + Delta-G solvation = -3202.445132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.34491 -37.31992 -35.75976 -35.02858 -32.55914 -31.87286 -30.13652 -29.41554 -26.69354 -25.71422 -25.10501 -24.16599 -22.58892 -21.52474 -20.31967 -19.90521 -18.51124 -16.86836 -16.21768 -15.72327 -15.43221 -14.70939 -14.54930 -14.26961 -14.07064 -13.90387 -13.42497 -13.15653 -13.11247 -12.85516 -12.56621 -12.39473 -12.34009 -12.04802 -11.73402 -11.56358 -11.40669 -10.99730 -10.90954 -10.81658 -10.79486 -10.68990 -10.55694 -10.51044 -10.31884 -10.16893 -10.01566 -9.77987 -9.66999 -8.67305 -8.35080 -8.02153 -6.57327 -5.61828 -3.06368 3.01173 3.34528 3.44617 3.50759 3.52463 4.59996 4.61985 4.73529 4.86896 4.94189 5.07204 5.19485 5.26384 5.30030 5.42382 5.49502 5.50703 5.55315 5.60833 5.65197 5.71609 5.81676 5.86835 5.92936 5.99418 6.01645 6.06421 6.11900 6.23484 6.28696 6.30459 6.34905 6.58904 6.64351 6.78125 6.92873 7.03698 7.11854 7.47421 7.53356 7.81892 7.89397 7.93095 8.51401 8.66827 9.37969 10.02922 10.52907 11.43309 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.005196 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.739778 B = 5387.675356 C = 6030.763571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.147 4.147 6 C 0.510 3.490 7 O -0.526 6.526 8 N -0.605 5.605 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.122 4.122 13 C 0.124 3.876 14 H 0.071 0.929 15 C 0.165 3.835 16 N -0.602 5.602 17 C 0.164 3.836 18 C -0.245 4.245 19 H 0.065 0.935 20 C 0.000 4.000 21 N -0.911 5.911 22 Si 0.901 3.099 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.280 1.280 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.024 0.976 45 H 0.046 0.954 46 H -0.008 1.008 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.857 3.522 -2.532 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.134 4.134 4 H 0.106 0.894 5 C -0.204 4.204 6 C 0.298 3.702 7 O -0.402 6.402 8 N -0.339 5.339 9 C -0.018 4.018 10 C -0.171 4.171 11 C -0.157 4.157 12 C -0.160 4.160 13 C 0.020 3.980 14 H 0.089 0.911 15 C 0.038 3.962 16 N -0.326 5.326 17 C 0.019 3.981 18 C -0.375 4.375 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.557 5.557 22 Si 0.732 3.268 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.206 1.206 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.010 0.990 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.337 3.010 -2.513 18.752 hybrid contribution 0.670 0.449 0.729 1.088 sum -17.667 3.459 -1.784 18.090 Atomic orbital electron populations 1.21845 0.95886 1.01637 1.01598 1.21326 0.94866 0.94521 1.03559 1.21372 0.93135 0.98874 0.99976 0.89354 1.21883 1.01716 1.00546 0.96277 1.20571 0.89446 0.83613 0.76573 1.90765 1.67740 1.31847 1.49891 1.48441 1.07825 1.06730 1.70873 1.21768 0.96125 0.86262 0.97682 1.21911 0.97359 1.00203 0.97627 1.21528 0.94144 0.98420 1.01591 1.22002 1.02389 0.94458 0.97180 1.22590 0.75590 1.02644 0.97224 0.91098 1.21547 0.82904 0.90488 1.01228 1.44263 0.99975 1.83713 1.04627 1.20809 0.93995 0.97439 0.85878 1.19245 0.97598 1.34766 0.85889 0.91692 1.25010 0.98962 0.98878 0.96877 1.70047 1.15783 1.43420 1.26440 0.86279 0.80229 0.76989 0.83341 1.21665 1.21896 1.20578 0.92664 0.92553 0.92948 0.91382 0.91102 0.92006 0.91564 0.92013 0.90157 0.91723 0.91877 0.91449 0.92367 0.92078 0.93020 0.88956 0.91281 0.93625 0.95800 0.93560 0.98961 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 37.16 0.36 -0.93 16 2 C -0.10 -1.19 4.70 -26.73 -0.13 -1.32 16 3 C -0.11 -1.29 1.87 -91.77 -0.17 -1.46 16 4 H 0.09 0.87 7.04 -51.93 -0.37 0.50 16 5 C -0.15 -1.44 8.69 37.16 0.32 -1.11 16 6 C 0.51 8.27 6.90 -10.99 -0.08 8.19 16 7 O -0.53 -10.62 11.43 5.55 0.06 -10.55 16 8 N -0.60 -9.62 2.97 -164.98 -0.49 -10.11 16 9 C 0.11 1.24 5.11 -3.72 -0.02 1.22 16 10 C -0.13 -1.54 6.08 -26.61 -0.16 -1.70 16 11 C -0.12 -1.73 5.88 -26.69 -0.16 -1.89 16 12 C -0.12 -2.26 4.84 -26.38 -0.13 -2.39 16 13 C 0.12 2.46 3.16 -67.38 -0.21 2.25 16 14 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 15 C 0.17 3.85 3.59 -4.04 -0.01 3.83 16 16 N -0.60 -15.98 2.65 -181.12 -0.48 -16.46 16 17 C 0.16 4.24 8.26 59.84 0.49 4.73 16 18 C -0.24 -7.00 9.65 -15.05 -0.15 -7.14 16 19 H 0.07 1.87 7.85 -52.49 -0.41 1.45 16 20 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 21 N -0.91 -26.80 10.63 55.49 0.59 -26.21 16 22 Si 0.90 22.48 29.57 -169.99 -5.03 17.46 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 6.49 -51.93 -0.34 0.09 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 30 H 0.07 0.90 8.12 -51.92 -0.42 0.48 16 31 H 0.06 0.57 6.13 -51.92 -0.32 0.25 16 32 H 0.07 0.51 6.41 -51.93 -0.33 0.18 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.74 4.96 -51.93 -0.26 0.49 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.09 2.05 6.29 -51.93 -0.33 1.72 16 42 H 0.07 1.74 6.12 -51.93 -0.32 1.42 16 43 H 0.05 1.08 6.94 -51.93 -0.36 0.72 16 44 H 0.02 0.64 6.24 -51.93 -0.32 0.31 16 45 H 0.05 1.29 7.07 -51.93 -0.37 0.92 16 46 H -0.01 -0.19 7.83 -51.93 -0.41 -0.60 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 347.40 15.07 5.24 5.24 Total: -1.00 -31.28 347.40 -8.56 -39.84 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.33 Total: -1.40 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.12 Total: 2.20 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.38 Total: -52.78 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.06 Total: -10.55 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.28 -8.56 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157573870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.745 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds