Wall clock time and date at job start Tue Mar 31 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47299 * 2 1 4 4 H 1.09000 * 109.46481 * 304.70477 * 3 2 1 5 5 C 1.53002 * 109.47067 * 64.69975 * 3 2 1 6 6 C 1.50698 * 109.47210 * 184.70365 * 3 2 1 7 7 O 1.21284 * 119.99666 * 351.19486 * 6 3 2 8 8 N 1.34777 * 119.99932 * 171.18602 * 6 3 2 9 9 C 1.46919 * 120.62960 * 356.32364 * 8 6 3 10 10 C 1.53186 * 108.77467 * 233.57955 * 9 8 6 11 11 C 1.53046 * 109.31636 * 305.36715 * 10 9 8 12 12 C 1.53042 * 109.53557 * 61.36240 * 11 10 9 13 13 C 1.46924 * 120.62633 * 176.03814 * 8 6 3 14 14 H 1.08999 * 109.58939 * 246.20532 * 13 8 6 15 15 C 1.52999 * 109.59019 * 6.63393 * 13 8 6 16 16 N 1.46502 * 109.47275 * 182.71003 * 15 13 8 17 17 C 1.46492 * 120.00024 * 264.12522 * 16 15 13 18 18 C 1.36942 * 119.99608 * 84.12732 * 16 15 13 19 19 H 1.07990 * 120.00394 * 23.81501 * 18 16 15 20 20 C 1.38819 * 119.99231 * 203.82047 * 18 16 15 21 21 N 1.31608 * 120.00311 * 10.21885 * 20 18 16 22 22 Si 1.86805 * 119.99330 * 190.21989 * 20 18 16 23 23 H 1.48497 * 109.47130 * 94.98701 * 22 20 18 24 24 H 1.48499 * 109.46565 * 214.98343 * 22 20 18 25 25 H 1.48492 * 109.47397 * 334.98182 * 22 20 18 26 26 H 1.08999 * 109.47428 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47078 * 300.00726 * 1 2 3 28 28 H 1.08999 * 109.46922 * 60.00281 * 1 2 3 29 29 H 1.08994 * 109.47078 * 239.99274 * 2 1 3 30 30 H 1.09008 * 109.46890 * 119.99443 * 2 1 3 31 31 H 1.09009 * 109.46866 * 183.17428 * 5 3 2 32 32 H 1.08994 * 109.47646 * 303.17512 * 5 3 2 33 33 H 1.08999 * 109.46577 * 63.17983 * 5 3 2 34 34 H 1.08997 * 109.59357 * 353.37065 * 9 8 6 35 35 H 1.09004 * 109.58493 * 113.65636 * 9 8 6 36 36 H 1.08997 * 109.50001 * 65.31918 * 10 9 8 37 37 H 1.08996 * 109.50191 * 185.38263 * 10 9 8 38 38 H 1.08995 * 109.46084 * 181.38351 * 11 10 9 39 39 H 1.08999 * 109.46047 * 301.36173 * 11 10 9 40 40 H 1.09005 * 109.49448 * 58.58781 * 12 11 10 41 41 H 1.09003 * 109.49813 * 178.65379 * 12 11 10 42 42 H 1.09004 * 109.46879 * 302.70631 * 15 13 8 43 43 H 1.08998 * 109.47342 * 62.70732 * 15 13 8 44 44 H 1.09002 * 109.47231 * 91.42632 * 17 16 15 45 45 H 1.08998 * 109.47314 * 211.42235 * 17 16 15 46 46 H 1.09002 * 109.47337 * 331.42509 * 17 16 15 47 47 H 0.97003 * 120.00155 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6095 1.9800 -0.8449 5 6 1.6289 2.1288 1.3042 6 6 3.5426 1.4441 -0.1165 7 8 4.1584 0.4027 -0.0315 8 7 4.2018 2.6027 -0.3153 9 6 3.4656 3.8605 -0.5007 10 6 3.9394 4.5224 -1.7985 11 6 5.4607 4.6845 -1.7579 12 6 6.1195 3.3074 -1.6496 13 6 5.6705 2.6327 -0.3445 14 1 6.0415 3.1994 0.5094 15 6 6.2139 1.2035 -0.2905 16 7 7.6781 1.2388 -0.2544 17 6 8.4450 1.0911 -1.4938 18 6 8.3297 1.4098 0.9378 19 1 7.8421 1.1408 1.8631 20 6 9.6169 1.9290 0.9569 21 7 10.1357 2.4426 -0.1382 22 14 10.6128 1.8988 2.5371 23 1 11.4794 0.6930 2.5530 24 1 11.4584 3.1172 2.6126 25 1 9.6923 1.8622 3.7017 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.9431 3.1724 1.2803 32 1 0.5459 2.0780 1.4158 33 1 2.1050 1.6252 2.1455 34 1 2.3976 3.6528 -0.5653 35 1 3.6585 4.5244 0.3420 36 1 3.6627 3.8976 -2.6476 37 1 3.4713 5.5015 -1.8995 38 1 5.7978 5.1776 -2.6697 39 1 5.7386 5.2887 -0.8943 40 1 5.8221 2.6940 -2.5002 41 1 7.2035 3.4220 -1.6449 42 1 5.8404 0.7063 0.6048 43 1 5.8853 0.6561 -1.1739 44 1 8.6358 2.0749 -1.9224 45 1 9.3933 0.5989 -1.2778 46 1 7.8768 0.4896 -2.2033 47 1 11.0353 2.8051 -0.1249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157573870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:11 Heat of formation + Delta-G solvation = -32.298634 kcal Electronic energy + Delta-G solvation = -24301.598107 eV Core-core repulsion = 21098.363418 eV Total energy + Delta-G solvation = -3203.234689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66095 -38.66082 -37.37281 -36.39485 -33.83210 -33.69219 -31.81308 -30.33636 -28.38862 -27.70454 -26.30179 -25.36797 -24.05300 -22.90059 -21.97615 -21.08271 -19.71222 -18.81476 -17.73443 -17.08120 -16.67392 -16.55185 -15.75710 -15.59043 -15.43805 -15.27501 -14.97787 -14.52733 -14.44765 -14.19472 -14.04433 -13.84141 -13.45907 -13.30230 -12.92399 -12.85031 -12.67501 -12.59307 -12.52596 -12.43458 -12.22155 -12.11757 -11.99819 -11.82671 -11.74401 -11.62508 -11.54922 -11.51452 -11.37926 -10.65559 -10.03377 -9.42621 -8.72897 -7.82750 -5.31283 1.43085 1.44743 1.54026 1.75163 2.08270 2.51053 3.29544 3.57339 3.76552 3.90354 3.92800 3.95731 4.03611 4.08621 4.18012 4.36090 4.41418 4.52952 4.57500 4.62923 4.66491 4.68635 4.78041 4.80609 4.85996 4.96475 5.02753 5.04591 5.09851 5.14124 5.17397 5.20760 5.24964 5.25661 5.29075 5.37265 5.43448 5.47720 5.54297 5.60301 5.69591 5.80494 6.32980 6.62745 7.15580 7.34174 7.88887 8.34260 9.20659 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.005196 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.739778 B = 5387.675356 C = 6030.763571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.100 4.100 4 H 0.120 0.880 5 C -0.143 4.143 6 C 0.499 3.501 7 O -0.577 6.577 8 N -0.605 5.605 9 C 0.098 3.902 10 C -0.125 4.125 11 C -0.116 4.116 12 C -0.112 4.112 13 C 0.137 3.863 14 H 0.042 0.958 15 C 0.178 3.822 16 N -0.618 5.618 17 C 0.182 3.818 18 C -0.262 4.262 19 H 0.056 0.944 20 C -0.045 4.045 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.287 1.287 24 H -0.288 1.288 25 H -0.273 1.273 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.039 0.961 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.012 0.988 45 H 0.019 0.981 46 H 0.010 0.990 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.892 5.331 -2.494 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.121 4.121 4 H 0.138 0.862 5 C -0.201 4.201 6 C 0.289 3.711 7 O -0.457 6.457 8 N -0.338 5.338 9 C -0.023 4.023 10 C -0.163 4.163 11 C -0.153 4.153 12 C -0.150 4.150 13 C 0.031 3.969 14 H 0.060 0.940 15 C 0.052 3.948 16 N -0.342 5.342 17 C 0.037 3.963 18 C -0.392 4.392 19 H 0.074 0.926 20 C -0.240 4.240 21 N -0.580 5.580 22 Si 0.795 3.205 23 H -0.214 1.214 24 H -0.214 1.214 25 H -0.198 1.198 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.059 0.941 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.030 0.970 45 H 0.038 0.962 46 H 0.029 0.971 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.429 4.846 -2.478 22.110 hybrid contribution 1.585 -0.173 0.703 1.742 sum -19.845 4.673 -1.776 20.465 Atomic orbital electron populations 1.21796 0.92949 1.02391 1.03033 1.21311 0.97274 0.94163 1.01560 1.21401 0.88875 0.99583 1.02257 0.86195 1.21906 1.03478 1.00551 0.94132 1.21589 0.91640 0.82725 0.75165 1.90739 1.69266 1.33684 1.51970 1.48458 1.06045 1.08711 1.70571 1.22154 0.97597 0.84221 0.98348 1.21900 0.94623 1.02340 0.97395 1.21505 0.96526 0.95278 1.02014 1.21810 1.00026 0.97175 0.96035 1.21921 0.78668 0.99363 0.96929 0.93960 1.21345 0.81240 0.92592 0.99584 1.44435 1.01321 1.84220 1.04260 1.20538 0.93030 0.96673 0.86065 1.19390 0.98338 1.35188 0.86308 0.92612 1.25721 0.99680 0.98574 1.00049 1.70199 1.15821 1.43834 1.28164 0.85265 0.78572 0.76860 0.79833 1.21432 1.21439 1.19772 0.92436 0.91123 0.91346 0.93332 0.93416 0.90813 0.88495 0.94148 0.86383 0.90819 0.91556 0.87578 0.91109 0.92588 0.93311 0.93316 0.93621 0.94519 0.97028 0.96181 0.97125 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.67 71.98 0.70 -1.30 16 2 C -0.10 -2.27 4.70 30.60 0.14 -2.13 16 3 C -0.10 -2.06 1.87 -11.54 -0.02 -2.08 16 4 H 0.12 1.76 7.04 -2.39 -0.02 1.75 16 5 C -0.14 -2.34 8.69 71.98 0.63 -1.71 16 6 C 0.50 16.01 6.90 87.66 0.60 16.62 16 7 O -0.58 -24.35 11.43 -3.04 -0.03 -24.39 16 8 N -0.60 -18.76 2.97 -794.25 -2.36 -21.12 16 9 C 0.10 1.97 5.11 86.36 0.44 2.41 16 10 C -0.12 -2.39 6.08 30.67 0.19 -2.21 16 11 C -0.12 -3.17 5.88 30.62 0.18 -2.99 16 12 C -0.11 -4.24 4.84 30.82 0.15 -4.09 16 13 C 0.14 5.62 3.16 45.12 0.14 5.76 16 14 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 15 C 0.18 8.76 3.59 86.38 0.31 9.07 16 16 N -0.62 -34.49 2.65 -726.95 -1.92 -36.42 16 17 C 0.18 9.89 8.26 127.77 1.06 10.94 16 18 C -0.26 -15.60 9.65 84.03 0.81 -14.79 16 19 H 0.06 3.35 7.85 -2.92 -0.02 3.33 16 20 C -0.05 -2.63 5.13 84.87 0.44 -2.20 16 21 N -0.93 -56.60 10.63 21.65 0.23 -56.37 16 22 Si 0.97 47.14 29.57 68.60 2.03 49.17 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.79 6.49 -2.39 -0.02 0.77 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 1.22 8.09 -2.39 -0.02 1.20 16 30 H 0.05 1.23 8.12 -2.38 -0.02 1.21 16 31 H 0.07 1.04 6.13 -2.38 -0.01 1.02 16 32 H 0.10 1.03 6.41 -2.39 -0.02 1.02 16 33 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.12 1.52 4.96 -2.39 -0.01 1.51 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.05 2.27 6.29 -2.39 -0.01 2.25 16 42 H 0.05 2.46 6.12 -2.39 -0.01 2.45 16 43 H 0.04 1.84 6.94 -2.39 -0.02 1.82 16 44 H 0.01 0.65 6.24 -2.39 -0.01 0.64 16 45 H 0.02 1.15 7.07 -2.39 -0.02 1.13 16 46 H 0.01 0.51 7.83 -2.39 -0.02 0.49 16 47 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -73.09 347.40 4.63 -68.46 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.92 Total: 9.36 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 5.76 Total: 11.29 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -4.05 Total: -113.90 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.03 Total: -24.39 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -73.09 4.63 -68.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157573870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.164 kcal (2) G-P(sol) polarization free energy of solvation -73.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds