Wall clock time and date at job start Tue Mar 31 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47542 * 2 1 4 4 H 1.09002 * 109.47159 * 55.33131 * 3 2 1 5 5 C 1.52997 * 109.47355 * 295.32984 * 3 2 1 6 6 C 1.50706 * 109.47436 * 175.32835 * 3 2 1 7 7 O 1.21284 * 119.99766 * 18.26789 * 6 3 2 8 8 N 1.34771 * 119.99960 * 197.99617 * 6 3 2 9 9 C 1.46918 * 120.63355 * 353.85424 * 8 6 3 10 10 C 1.52770 * 109.01066 * 233.58857 * 9 8 6 11 11 C 1.53037 * 109.37998 * 305.59061 * 10 9 8 12 12 C 1.53032 * 109.54208 * 61.23915 * 11 10 9 13 13 C 1.46933 * 120.63033 * 174.14019 * 8 6 3 14 14 H 1.08993 * 109.58344 * 246.29690 * 13 8 6 15 15 C 1.53005 * 109.58352 * 6.57874 * 13 8 6 16 16 N 1.46499 * 109.47123 * 181.29793 * 15 13 8 17 17 C 1.46496 * 119.99696 * 265.11377 * 16 15 13 18 18 C 1.36936 * 120.00157 * 85.10890 * 16 15 13 19 19 H 1.08005 * 120.00017 * 322.97861 * 18 16 15 20 20 C 1.38807 * 120.00049 * 142.98405 * 18 16 15 21 21 N 1.31624 * 120.00174 * 161.89192 * 20 18 16 22 22 Si 1.86797 * 120.00211 * 341.89413 * 20 18 16 23 23 H 1.48506 * 109.46902 * 91.11009 * 22 20 18 24 24 H 1.48497 * 109.47605 * 211.11590 * 22 20 18 25 25 H 1.48503 * 109.46747 * 331.11625 * 22 20 18 26 26 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46510 * 299.99831 * 1 2 3 28 28 H 1.09001 * 109.47099 * 59.99447 * 1 2 3 29 29 H 1.09009 * 109.46913 * 239.99998 * 2 1 3 30 30 H 1.09001 * 109.47099 * 120.00552 * 2 1 3 31 31 H 1.09003 * 109.47084 * 62.77640 * 5 3 2 32 32 H 1.08997 * 109.47288 * 182.77444 * 5 3 2 33 33 H 1.08994 * 109.47124 * 302.77893 * 5 3 2 34 34 H 1.09000 * 109.58773 * 353.41999 * 9 8 6 35 35 H 1.08999 * 109.58959 * 113.84956 * 9 8 6 36 36 H 1.09002 * 109.56225 * 185.55005 * 10 9 8 37 37 H 1.08995 * 109.38224 * 65.51508 * 10 9 8 38 38 H 1.09008 * 109.45961 * 301.21206 * 11 10 9 39 39 H 1.08999 * 109.44377 * 181.25566 * 11 10 9 40 40 H 1.08999 * 109.50204 * 178.68346 * 12 11 10 41 41 H 1.08995 * 109.52738 * 58.59979 * 12 11 10 42 42 H 1.09004 * 109.47050 * 301.29416 * 15 13 8 43 43 H 1.08993 * 109.47380 * 61.28945 * 15 13 8 44 44 H 1.09003 * 109.47654 * 89.84097 * 17 16 15 45 45 H 1.09009 * 109.46925 * 209.84070 * 17 16 15 46 46 H 1.08995 * 109.47215 * 329.83856 * 17 16 15 47 47 H 0.97000 * 120.00123 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6101 1.9798 0.8452 5 6 1.6283 2.1290 -1.3038 6 6 3.5427 1.4439 0.1157 7 8 4.1715 0.4385 -0.1388 8 7 4.1880 2.5641 0.4967 9 6 3.4569 3.8262 0.6726 10 6 4.1327 4.9132 -0.1614 11 6 5.6158 4.9887 0.2085 12 6 6.2895 3.6502 -0.1021 13 6 5.6373 2.5477 0.7380 14 1 5.8337 2.7263 1.7951 15 6 6.2094 1.1878 0.3327 16 7 7.6490 1.1633 0.6031 17 6 8.6000 1.4915 -0.4618 18 6 8.1057 0.8339 1.8513 19 1 7.5633 1.1570 2.7275 20 6 9.2659 0.0846 1.9905 21 7 9.9018 0.0640 3.1427 22 14 9.9249 -0.8944 0.5425 23 1 10.8814 -0.0580 -0.2262 24 1 10.6188 -2.1090 1.0408 25 1 8.7982 -1.2942 -0.3384 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.5408 2.1719 -1.3641 32 1 2.0336 3.1406 -1.3254 33 1 2.0171 1.5636 -2.1506 34 1 2.4263 3.7008 0.3407 35 1 3.4720 4.1138 1.7239 36 1 3.6584 5.8741 0.0382 37 1 4.0335 4.6714 -1.2195 38 1 5.7142 5.2067 1.2720 39 1 6.0942 5.7790 -0.3699 40 1 7.3506 3.7122 0.1397 41 1 6.1706 3.4194 -1.1607 42 1 5.7186 0.4015 0.9063 43 1 6.0366 1.0233 -0.7308 44 1 8.7991 2.5632 -0.4538 45 1 9.5306 0.9479 -0.2982 46 1 8.1781 1.2076 -1.4259 47 1 10.7124 -0.4598 3.2400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157573871.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:16 Heat of formation + Delta-G solvation = -7.789983 kcal Electronic energy + Delta-G solvation = -24285.176970 eV Core-core repulsion = 21083.005056 eV Total energy + Delta-G solvation = -3202.171914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.47520 -37.48304 -35.92755 -35.19359 -32.67437 -32.00401 -30.72897 -29.55037 -27.18510 -25.82696 -25.16096 -24.29834 -22.84112 -21.55457 -20.43835 -20.13665 -18.46613 -17.05151 -16.36667 -15.85112 -15.27941 -15.19615 -14.96618 -14.36906 -14.32718 -13.84165 -13.51367 -13.48144 -13.16150 -13.03782 -12.88879 -12.43811 -12.27215 -12.21892 -12.14469 -11.79374 -11.73950 -11.48442 -11.27655 -10.95311 -10.86670 -10.78516 -10.72069 -10.58440 -10.39658 -10.32353 -10.03254 -9.78521 -9.49953 -8.73371 -8.38827 -8.15544 -6.66717 -5.87034 -3.29769 2.91924 3.22771 3.38635 3.55559 3.64428 4.52880 4.63385 4.67898 4.78695 4.87123 4.95394 5.05486 5.20508 5.26461 5.29557 5.34843 5.37572 5.46219 5.47697 5.50321 5.52826 5.65458 5.77503 5.81661 5.84359 5.92249 5.92984 5.98461 6.10171 6.14013 6.19370 6.29589 6.33177 6.35645 6.43413 6.55411 6.62519 6.75909 6.92401 6.94941 7.36607 7.74519 8.17888 8.43514 8.57827 9.13075 9.83943 10.25347 11.29039 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.005542 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.553749 B = 5051.397495 C = 6010.361745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.145 4.145 6 C 0.512 3.488 7 O -0.523 6.523 8 N -0.606 5.606 9 C 0.103 3.897 10 C -0.133 4.133 11 C -0.120 4.120 12 C -0.123 4.123 13 C 0.124 3.876 14 H 0.072 0.928 15 C 0.165 3.835 16 N -0.614 5.614 17 C 0.107 3.893 18 C -0.261 4.261 19 H 0.078 0.922 20 C 0.029 3.971 21 N -0.910 5.910 22 Si 0.893 3.107 23 H -0.288 1.288 24 H -0.306 1.306 25 H -0.271 1.271 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.048 0.952 44 H 0.014 0.986 45 H 0.042 0.958 46 H 0.028 0.972 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.538 9.237 -8.189 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.106 0.894 5 C -0.203 4.203 6 C 0.299 3.701 7 O -0.398 6.398 8 N -0.340 5.340 9 C -0.020 4.020 10 C -0.171 4.171 11 C -0.158 4.158 12 C -0.162 4.162 13 C 0.020 3.980 14 H 0.090 0.910 15 C 0.039 3.961 16 N -0.339 5.339 17 C -0.037 4.037 18 C -0.390 4.390 19 H 0.095 0.905 20 C -0.170 4.170 21 N -0.553 5.553 22 Si 0.726 3.274 23 H -0.216 1.216 24 H -0.235 1.235 25 H -0.196 1.196 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.032 0.968 45 H 0.060 0.940 46 H 0.046 0.954 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.058 8.603 -8.231 21.630 hybrid contribution 0.537 -0.260 -0.623 0.862 sum -17.521 8.343 -8.854 21.330 Atomic orbital electron populations 1.21830 0.95763 1.01718 1.01591 1.21349 0.95037 0.94393 1.03644 1.21375 0.92875 0.99035 1.00026 0.89375 1.21873 1.01735 1.00422 0.96243 1.20606 0.89626 0.83025 0.76827 1.90792 1.67151 1.33523 1.48351 1.48307 1.09164 1.08726 1.67849 1.21699 0.95937 0.84295 1.00097 1.21828 0.96867 0.98170 1.00221 1.21538 0.94682 0.98069 1.01491 1.21945 1.01044 0.93560 0.99614 1.22304 0.76658 0.99683 0.99399 0.90988 1.21479 0.83111 0.92252 0.99260 1.44364 1.00562 1.79620 1.09389 1.21448 0.94034 0.97528 0.90720 1.18778 1.08819 1.27955 0.83450 0.90483 1.25438 0.97950 0.97566 0.96057 1.69832 1.18067 1.42480 1.24887 0.86756 0.78317 0.79308 0.83043 1.21647 1.23460 1.19619 0.92604 0.92875 0.92615 0.90970 0.91373 0.91504 0.92041 0.91965 0.89774 0.91687 0.91215 0.91815 0.91897 0.92231 0.89735 0.92618 0.90627 0.93335 0.96849 0.94003 0.95376 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.66 37.16 0.36 -0.91 16 2 C -0.11 -1.20 4.77 -26.73 -0.13 -1.33 16 3 C -0.11 -1.24 1.86 -91.77 -0.17 -1.41 16 4 H 0.09 0.84 7.24 -51.93 -0.38 0.46 16 5 C -0.15 -1.30 8.48 37.16 0.32 -0.98 16 6 C 0.51 7.98 6.80 -10.99 -0.07 7.91 16 7 O -0.52 -10.37 11.52 5.55 0.06 -10.31 16 8 N -0.61 -9.04 2.98 -165.48 -0.49 -9.53 16 9 C 0.10 1.10 5.67 -3.93 -0.02 1.08 16 10 C -0.13 -1.34 6.07 -26.83 -0.16 -1.50 16 11 C -0.12 -1.49 5.88 -26.70 -0.16 -1.65 16 12 C -0.12 -1.99 4.73 -26.62 -0.13 -2.11 16 13 C 0.12 2.27 3.17 -67.59 -0.21 2.06 16 14 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 15 C 0.16 3.70 3.60 -4.04 -0.01 3.68 16 16 N -0.61 -15.54 2.21 -181.12 -0.40 -15.94 16 17 C 0.11 2.49 8.75 59.84 0.52 3.02 16 18 C -0.26 -7.63 9.97 -15.06 -0.15 -7.78 16 19 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 20 C 0.03 0.88 5.37 -17.43 -0.09 0.79 16 21 N -0.91 -28.76 13.97 55.49 0.78 -27.98 16 22 Si 0.89 23.86 24.89 -169.99 -4.23 19.63 16 23 H -0.29 -7.37 6.55 56.52 0.37 -7.00 16 24 H -0.31 -8.23 7.11 56.52 0.40 -7.83 16 25 H -0.27 -7.29 7.11 56.52 0.40 -6.89 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.41 6.62 -51.93 -0.34 0.07 16 29 H 0.07 0.90 8.06 -51.92 -0.42 0.48 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.47 6.69 -51.93 -0.35 0.12 16 32 H 0.06 0.51 6.23 -51.93 -0.32 0.19 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.71 4.44 -51.93 -0.23 0.48 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.54 6.15 -51.93 -0.32 1.22 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.90 6.31 -51.93 -0.33 1.57 16 43 H 0.05 1.10 6.80 -51.93 -0.35 0.75 16 44 H 0.01 0.29 6.70 -51.93 -0.35 -0.06 16 45 H 0.04 1.05 2.74 -51.92 -0.14 0.91 16 46 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 47 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -33.16 342.88 -7.41 -40.57 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.18 Total: -2.47 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.12 Total: 0.86 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.12 Total: -53.45 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.06 Total: -10.31 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.23 Total: 19.63 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.16 -7.41 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157573871.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.778 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds