Wall clock time and date at job start Tue Mar 31 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47542 * 2 1 4 4 H 1.09002 * 109.47159 * 55.33131 * 3 2 1 5 5 C 1.52997 * 109.47355 * 295.32984 * 3 2 1 6 6 C 1.50706 * 109.47436 * 175.32835 * 3 2 1 7 7 O 1.21284 * 119.99766 * 18.26789 * 6 3 2 8 8 N 1.34771 * 119.99960 * 197.99617 * 6 3 2 9 9 C 1.46918 * 120.63355 * 353.85424 * 8 6 3 10 10 C 1.52770 * 109.01066 * 233.58857 * 9 8 6 11 11 C 1.53037 * 109.37998 * 305.59061 * 10 9 8 12 12 C 1.53032 * 109.54208 * 61.23915 * 11 10 9 13 13 C 1.46933 * 120.63033 * 174.14019 * 8 6 3 14 14 H 1.08993 * 109.58344 * 246.29690 * 13 8 6 15 15 C 1.53005 * 109.58352 * 6.57874 * 13 8 6 16 16 N 1.46499 * 109.47123 * 181.29793 * 15 13 8 17 17 C 1.46496 * 119.99696 * 265.11377 * 16 15 13 18 18 C 1.36936 * 120.00157 * 85.10890 * 16 15 13 19 19 H 1.08005 * 120.00017 * 322.97861 * 18 16 15 20 20 C 1.38807 * 120.00049 * 142.98405 * 18 16 15 21 21 N 1.31624 * 120.00174 * 161.89192 * 20 18 16 22 22 Si 1.86797 * 120.00211 * 341.89413 * 20 18 16 23 23 H 1.48506 * 109.46902 * 91.11009 * 22 20 18 24 24 H 1.48497 * 109.47605 * 211.11590 * 22 20 18 25 25 H 1.48503 * 109.46747 * 331.11625 * 22 20 18 26 26 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46510 * 299.99831 * 1 2 3 28 28 H 1.09001 * 109.47099 * 59.99447 * 1 2 3 29 29 H 1.09009 * 109.46913 * 239.99998 * 2 1 3 30 30 H 1.09001 * 109.47099 * 120.00552 * 2 1 3 31 31 H 1.09003 * 109.47084 * 62.77640 * 5 3 2 32 32 H 1.08997 * 109.47288 * 182.77444 * 5 3 2 33 33 H 1.08994 * 109.47124 * 302.77893 * 5 3 2 34 34 H 1.09000 * 109.58773 * 353.41999 * 9 8 6 35 35 H 1.08999 * 109.58959 * 113.84956 * 9 8 6 36 36 H 1.09002 * 109.56225 * 185.55005 * 10 9 8 37 37 H 1.08995 * 109.38224 * 65.51508 * 10 9 8 38 38 H 1.09008 * 109.45961 * 301.21206 * 11 10 9 39 39 H 1.08999 * 109.44377 * 181.25566 * 11 10 9 40 40 H 1.08999 * 109.50204 * 178.68346 * 12 11 10 41 41 H 1.08995 * 109.52738 * 58.59979 * 12 11 10 42 42 H 1.09004 * 109.47050 * 301.29416 * 15 13 8 43 43 H 1.08993 * 109.47380 * 61.28945 * 15 13 8 44 44 H 1.09003 * 109.47654 * 89.84097 * 17 16 15 45 45 H 1.09009 * 109.46925 * 209.84070 * 17 16 15 46 46 H 1.08995 * 109.47215 * 329.83856 * 17 16 15 47 47 H 0.97000 * 120.00123 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6101 1.9798 0.8452 5 6 1.6283 2.1290 -1.3038 6 6 3.5427 1.4439 0.1157 7 8 4.1715 0.4385 -0.1388 8 7 4.1880 2.5641 0.4967 9 6 3.4569 3.8262 0.6726 10 6 4.1327 4.9132 -0.1614 11 6 5.6158 4.9887 0.2085 12 6 6.2895 3.6502 -0.1021 13 6 5.6373 2.5477 0.7380 14 1 5.8337 2.7263 1.7951 15 6 6.2094 1.1878 0.3327 16 7 7.6490 1.1633 0.6031 17 6 8.6000 1.4915 -0.4618 18 6 8.1057 0.8339 1.8513 19 1 7.5633 1.1570 2.7275 20 6 9.2659 0.0846 1.9905 21 7 9.9018 0.0640 3.1427 22 14 9.9249 -0.8944 0.5425 23 1 10.8814 -0.0580 -0.2262 24 1 10.6188 -2.1090 1.0408 25 1 8.7982 -1.2942 -0.3384 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.5408 2.1719 -1.3641 32 1 2.0336 3.1406 -1.3254 33 1 2.0171 1.5636 -2.1506 34 1 2.4263 3.7008 0.3407 35 1 3.4720 4.1138 1.7239 36 1 3.6584 5.8741 0.0382 37 1 4.0335 4.6714 -1.2195 38 1 5.7142 5.2067 1.2720 39 1 6.0942 5.7790 -0.3699 40 1 7.3506 3.7122 0.1397 41 1 6.1706 3.4194 -1.1607 42 1 5.7186 0.4015 0.9063 43 1 6.0366 1.0233 -0.7308 44 1 8.7991 2.5632 -0.4538 45 1 9.5306 0.9479 -0.2982 46 1 8.1781 1.2076 -1.4259 47 1 10.7124 -0.4598 3.2400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157573871.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:15 Heat of formation + Delta-G solvation = -28.903048 kcal Electronic energy + Delta-G solvation = -24286.092501 eV Core-core repulsion = 21083.005056 eV Total energy + Delta-G solvation = -3203.087445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71680 -38.75354 -37.53062 -36.43209 -34.01461 -33.78020 -32.32731 -30.38505 -28.72321 -27.72112 -26.36655 -25.38677 -24.20144 -22.85881 -21.99816 -21.24616 -19.60160 -18.95292 -17.87982 -17.31972 -17.08587 -16.45049 -16.01757 -15.65532 -15.41118 -15.19206 -14.94368 -14.77001 -14.60896 -14.33927 -14.30419 -14.09916 -14.01009 -13.27640 -13.15682 -13.04145 -12.95368 -12.60205 -12.57263 -12.36525 -12.31106 -12.04318 -11.89509 -11.83664 -11.67746 -11.61916 -11.60980 -11.50683 -11.40916 -10.66452 -10.09795 -9.45569 -8.76794 -8.21660 -5.61880 1.23470 1.37028 1.49533 1.71588 2.03771 2.38297 3.06518 3.41703 3.57586 3.84572 3.90071 3.92688 4.02864 4.04564 4.15147 4.35155 4.37465 4.45932 4.48366 4.55059 4.60662 4.63502 4.66270 4.72766 4.75049 4.84162 4.85877 4.94111 5.02102 5.05516 5.09314 5.13701 5.15837 5.18149 5.22995 5.26989 5.34999 5.40234 5.48456 5.51908 5.74381 5.91073 6.11725 6.56507 6.94875 7.30758 7.61310 8.02812 8.98328 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.005542 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.553749 B = 5051.397495 C = 6010.361745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.101 4.101 4 H 0.114 0.886 5 C -0.140 4.140 6 C 0.500 3.500 7 O -0.576 6.576 8 N -0.606 5.606 9 C 0.095 3.905 10 C -0.125 4.125 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.134 3.866 14 H 0.043 0.957 15 C 0.177 3.823 16 N -0.626 5.626 17 C 0.107 3.893 18 C -0.253 4.253 19 H 0.040 0.960 20 C -0.025 4.025 21 N -0.953 5.953 22 Si 0.958 3.042 23 H -0.265 1.265 24 H -0.307 1.307 25 H -0.276 1.276 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.039 0.961 43 H 0.046 0.954 44 H 0.033 0.967 45 H 0.027 0.973 46 H 0.050 0.950 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.955 11.513 -10.262 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.123 4.123 4 H 0.132 0.868 5 C -0.197 4.197 6 C 0.290 3.710 7 O -0.456 6.456 8 N -0.339 5.339 9 C -0.026 4.026 10 C -0.163 4.163 11 C -0.155 4.155 12 C -0.154 4.154 13 C 0.028 3.972 14 H 0.061 0.939 15 C 0.052 3.948 16 N -0.353 5.353 17 C -0.037 4.037 18 C -0.383 4.383 19 H 0.057 0.943 20 C -0.220 4.220 21 N -0.598 5.598 22 Si 0.788 3.212 23 H -0.192 1.192 24 H -0.236 1.236 25 H -0.201 1.201 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.069 0.931 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.519 10.937 -10.327 25.442 hybrid contribution 1.214 -0.949 0.078 1.543 sum -19.305 9.987 -10.249 24.031 Atomic orbital electron populations 1.21782 0.92862 1.02379 1.03072 1.21336 0.97435 0.94303 1.01448 1.21412 0.88887 0.99454 1.02511 0.86800 1.21885 1.03632 1.00336 0.93879 1.21585 0.91703 0.82180 0.75580 1.90764 1.68666 1.35377 1.50762 1.48395 1.07735 1.10559 1.67236 1.22083 0.97135 0.82309 1.01065 1.21825 0.94847 0.99499 1.00159 1.21525 0.96507 0.95852 1.01575 1.21817 0.99684 0.94986 0.98891 1.21763 0.79472 0.97912 0.98054 0.93900 1.21318 0.81387 0.93813 0.98300 1.44479 1.02140 1.80074 1.08565 1.21501 0.92880 0.98550 0.90780 1.18635 1.08216 1.27244 0.84210 0.94261 1.26052 0.98637 0.98602 0.98737 1.69947 1.18977 1.43808 1.27051 0.85709 0.77866 0.77756 0.79859 1.19206 1.23628 1.20117 0.92527 0.91556 0.90810 0.92983 0.93997 0.88505 0.90738 0.93491 0.86483 0.91066 0.87613 0.91363 0.92396 0.90439 0.92322 0.92464 0.94310 0.93525 0.94879 0.95502 0.93145 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.66 71.98 0.70 -1.35 16 2 C -0.11 -2.37 4.77 30.59 0.15 -2.22 16 3 C -0.10 -2.05 1.86 -11.54 -0.02 -2.07 16 4 H 0.11 1.74 7.24 -2.39 -0.02 1.72 16 5 C -0.14 -2.00 8.48 71.98 0.61 -1.39 16 6 C 0.50 15.59 6.80 87.66 0.60 16.18 16 7 O -0.58 -24.03 11.52 -3.04 -0.04 -24.07 16 8 N -0.61 -17.64 2.98 -795.83 -2.37 -20.01 16 9 C 0.10 1.73 5.67 86.22 0.49 2.22 16 10 C -0.13 -1.99 6.07 30.53 0.19 -1.81 16 11 C -0.12 -2.61 5.88 30.62 0.18 -2.43 16 12 C -0.12 -3.65 4.73 30.67 0.15 -3.50 16 13 C 0.13 5.02 3.17 44.98 0.14 5.16 16 14 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 15 C 0.18 8.27 3.60 86.38 0.31 8.59 16 16 N -0.63 -32.64 2.21 -726.93 -1.61 -34.25 16 17 C 0.11 4.91 8.75 127.77 1.12 6.03 16 18 C -0.25 -15.48 9.97 84.03 0.84 -14.64 16 19 H 0.04 2.65 8.06 -2.91 -0.02 2.62 16 20 C -0.02 -1.52 5.37 84.86 0.46 -1.07 16 21 N -0.95 -62.22 13.97 21.65 0.30 -61.92 16 22 Si 0.96 50.33 24.89 68.60 1.71 52.04 16 23 H -0.26 -12.87 6.55 99.48 0.65 -12.22 16 24 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 25 H -0.28 -14.57 7.11 99.48 0.71 -13.86 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.80 6.62 -2.39 -0.02 0.78 16 29 H 0.05 1.34 8.06 -2.38 -0.02 1.32 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 0.85 6.69 -2.39 -0.02 0.84 16 32 H 0.07 0.89 6.23 -2.39 -0.01 0.87 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.12 1.38 4.44 -2.39 -0.01 1.37 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 2.14 6.15 -2.39 -0.01 2.13 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 2.09 6.31 -2.38 -0.02 2.07 16 43 H 0.05 2.18 6.80 -2.39 -0.02 2.17 16 44 H 0.03 1.40 6.70 -2.39 -0.02 1.38 16 45 H 0.03 1.32 2.74 -2.38 -0.01 1.31 16 46 H 0.05 2.07 7.86 -2.39 -0.02 2.05 16 47 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -77.48 342.88 4.76 -72.71 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.88 Total: 7.80 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 5.89 Total: 7.70 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -3.68 Total: -116.18 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.04 Total: -24.07 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 1.71 Total: 52.04 kcal Total: -77.48 4.76 -72.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157573871.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.810 kcal (2) G-P(sol) polarization free energy of solvation -77.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds