Wall clock time and date at job start Tue Mar 31 2020 05:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46977 * 2 1 4 4 H 1.09005 * 110.01816 * 304.64480 * 3 2 1 5 5 C 1.54272 * 110.03665 * 66.03536 * 3 2 1 6 6 C 1.54882 * 104.19582 * 142.89504 * 5 3 2 7 7 C 1.54889 * 102.75034 * 322.05868 * 6 5 3 8 8 C 1.53876 * 110.03457 * 183.20378 * 3 2 1 9 9 C 1.52997 * 110.03307 * 121.42588 * 8 3 2 10 10 C 1.50704 * 110.02762 * 359.97438 * 8 3 2 11 11 O 1.21275 * 119.99807 * 112.43877 * 10 8 3 12 12 N 1.34774 * 120.00031 * 292.43564 * 10 8 3 13 13 C 1.46500 * 120.00163 * 185.06564 * 12 10 8 14 14 C 1.53002 * 109.47433 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47274 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.46885 * 179.97438 * 15 14 13 17 17 C 1.36946 * 119.99931 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99432 * 359.97438 * 17 16 15 19 19 C 1.38809 * 119.99819 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00384 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99763 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47168 * 89.99493 * 21 19 17 23 23 H 1.48497 * 109.47076 * 210.00011 * 21 19 17 24 24 H 1.48505 * 109.46989 * 330.00088 * 21 19 17 25 25 H 1.09005 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47573 * 300.00192 * 1 2 3 27 27 H 1.09001 * 109.47217 * 60.00188 * 1 2 3 28 28 H 1.08999 * 109.47090 * 240.00018 * 2 1 3 29 29 H 1.08994 * 109.46899 * 119.99907 * 2 1 3 30 30 H 1.09000 * 110.48839 * 261.57755 * 5 3 2 31 31 H 1.09001 * 110.48266 * 24.21686 * 5 3 2 32 32 H 1.08999 * 110.75909 * 80.37694 * 6 5 3 33 33 H 1.09005 * 110.75295 * 203.74327 * 6 5 3 34 34 H 1.08999 * 110.48670 * 156.62212 * 7 6 5 35 35 H 1.09001 * 110.48829 * 279.26533 * 7 6 5 36 36 H 1.09003 * 109.46810 * 60.00863 * 9 8 3 37 37 H 1.09003 * 109.46914 * 180.02562 * 9 8 3 38 38 H 1.08995 * 109.47787 * 300.00382 * 9 8 3 39 39 H 0.97009 * 119.99856 * 5.05942 * 12 10 8 40 40 H 1.09005 * 109.46375 * 299.99386 * 13 12 10 41 41 H 1.08989 * 109.47436 * 59.99498 * 13 12 10 42 42 H 1.09005 * 109.46859 * 299.99908 * 14 13 12 43 43 H 1.09000 * 109.46981 * 59.98964 * 14 13 12 44 44 H 1.08998 * 109.47198 * 299.99723 * 15 14 13 45 45 H 1.09001 * 109.46869 * 59.99948 * 15 14 13 46 46 H 0.97005 * 120.00596 * 0.02562 * 16 15 14 47 47 H 0.97006 * 119.99995 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6154 1.9883 -0.8426 5 6 1.6611 2.1370 1.3244 6 6 2.8804 3.0373 1.6435 7 6 4.0777 2.1619 1.1973 8 6 3.5765 1.4584 -0.0808 9 6 4.0282 2.2359 -1.3186 10 6 4.1052 0.0481 -0.1344 11 8 4.6415 -0.3605 -1.1424 12 7 3.9819 -0.7589 0.9379 13 6 4.5926 -2.0905 0.9266 14 6 4.3063 -2.7943 2.2546 15 6 4.9435 -4.1852 2.2425 16 7 4.6698 -4.8588 3.5143 17 6 5.1446 -6.1242 3.7350 18 1 5.7204 -6.6257 2.9713 19 6 4.8857 -6.7622 4.9403 20 7 4.1844 -6.1508 5.8713 21 14 5.5328 -8.4886 5.2411 22 1 6.8819 -8.4113 5.8567 23 1 4.6118 -9.2100 6.1557 24 1 5.6190 -9.2169 3.9497 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.7637 2.7419 1.1949 31 1 1.5145 1.3995 2.1135 32 1 2.8405 3.9607 1.0658 33 1 2.9343 3.2504 2.7111 34 1 4.9440 2.7850 0.9750 35 1 4.3214 1.4284 1.9659 36 1 3.6621 3.2608 -1.2574 37 1 5.1172 2.2411 -1.3670 38 1 3.6274 1.7597 -2.2133 39 1 3.4889 -0.4580 1.7173 40 1 4.1739 -2.6752 0.1075 41 1 5.6698 -1.9951 0.7913 42 1 4.7252 -2.2094 3.0735 43 1 3.2290 -2.8897 2.3904 44 1 4.5242 -4.7699 1.4237 45 1 6.0208 -4.0901 2.1066 46 1 4.1523 -4.4085 4.2002 47 1 4.0038 -6.5966 6.7137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160978363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:58 Heat of formation + Delta-G solvation = -55.516231 kcal Electronic energy + Delta-G solvation = -22958.133069 eV Core-core repulsion = 19753.891590 eV Total energy + Delta-G solvation = -3204.241480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.02555 -37.92484 -36.04855 -34.37567 -33.55034 -31.98536 -31.38937 -29.56877 -27.90715 -26.33071 -24.89322 -23.02980 -22.59552 -21.58872 -21.16150 -20.52675 -19.15336 -17.10844 -16.73101 -16.18065 -15.73832 -15.39141 -15.01056 -14.73596 -14.43170 -14.30386 -13.69226 -13.55404 -13.28286 -13.02528 -12.84969 -12.75404 -12.65927 -12.27890 -12.13623 -11.79385 -11.63830 -11.39378 -11.33083 -10.96413 -10.94523 -10.89181 -10.84876 -10.76891 -10.69800 -10.61570 -10.58666 -10.08217 -9.75414 -9.58130 -8.91480 -8.87701 -6.93530 -5.77420 -3.06273 2.63940 3.18470 3.43932 3.49056 3.50826 4.20078 4.23829 4.30970 4.59186 4.72534 4.88924 4.93073 5.00616 5.06357 5.12039 5.18384 5.26032 5.32600 5.33584 5.37219 5.53432 5.57526 5.58510 5.61018 5.64584 5.67034 5.76937 5.84191 5.85556 5.92450 5.95971 6.02101 6.04819 6.08085 6.08618 6.15462 6.20218 6.32519 6.51499 6.79278 6.83573 7.52474 7.70121 8.24935 8.41613 9.52747 10.09894 10.44614 11.45596 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025202 B = 0.003033 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.737539 B = 9230.387435 C = 9475.220310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C -0.078 4.078 4 H 0.081 0.919 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.083 4.083 9 C -0.123 4.123 10 C 0.528 3.472 11 O -0.543 6.543 12 N -0.728 5.728 13 C 0.121 3.879 14 C -0.137 4.137 15 C 0.157 3.843 16 N -0.734 5.734 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.400 0.600 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 21.595 -10.858 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C -0.097 4.097 4 H 0.100 0.900 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.155 4.155 8 C -0.086 4.086 9 C -0.180 4.180 10 C 0.314 3.686 11 O -0.420 6.420 12 N -0.381 5.381 13 C -0.003 4.003 14 C -0.175 4.175 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.236 0.764 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.529 21.111 -11.609 24.719 hybrid contribution -0.042 -0.762 0.852 1.144 sum -5.571 20.349 -10.756 23.682 Atomic orbital electron populations 1.21765 0.95474 1.01862 1.01632 1.22022 0.96467 0.95643 1.02998 1.21890 0.91985 0.96846 0.98961 0.90030 1.22506 0.98044 0.98624 0.96686 1.22501 0.94248 0.98119 1.01225 1.22549 0.98574 0.98960 0.95418 1.21560 0.96392 0.92552 0.98105 1.21663 1.01726 0.98697 0.95931 1.20358 0.78299 0.87045 0.82854 1.90687 1.43997 1.76214 1.31137 1.46323 1.56180 1.16965 1.18603 1.21346 0.98163 0.82126 0.98616 1.21938 1.01911 0.97871 0.95791 1.20517 0.96770 0.89648 0.90228 1.42340 1.65233 1.16166 1.14055 1.19252 1.27090 0.91427 0.99342 0.91109 1.24746 1.00918 0.98746 0.96627 1.69660 1.44150 1.37732 1.06789 0.86170 0.78079 0.84229 0.77613 1.21687 1.21748 1.20710 0.92589 0.92514 0.92988 0.91751 0.90718 0.91290 0.91054 0.91300 0.91090 0.90792 0.90869 0.92084 0.92147 0.91875 0.76373 0.91398 0.91550 0.91381 0.91372 0.96074 0.96100 0.78314 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.75 37.16 0.36 -0.88 16 2 C -0.13 -1.26 4.03 -26.73 -0.11 -1.36 16 3 C -0.08 -0.63 2.60 -89.50 -0.23 -0.87 16 4 H 0.08 0.64 7.67 -51.93 -0.40 0.24 16 5 C -0.12 -0.81 5.44 -25.07 -0.14 -0.94 16 6 C -0.12 -0.79 6.91 -24.74 -0.17 -0.96 16 7 C -0.12 -0.93 5.78 -25.07 -0.14 -1.07 16 8 C -0.08 -0.78 0.81 -154.54 -0.13 -0.91 16 9 C -0.12 -1.14 7.48 37.16 0.28 -0.86 16 10 C 0.53 6.72 4.73 -10.98 -0.05 6.67 16 11 O -0.54 -9.07 16.07 5.56 0.09 -8.98 16 12 N -0.73 -8.53 3.66 -60.30 -0.22 -8.76 16 13 C 0.12 1.67 5.68 -4.04 -0.02 1.65 16 14 C -0.14 -2.10 5.44 -26.73 -0.15 -2.25 16 15 C 0.16 3.15 6.26 -4.04 -0.03 3.12 16 16 N -0.73 -18.77 5.60 -59.91 -0.34 -19.10 16 17 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 21 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.74 7.33 -51.93 -0.38 0.36 16 29 H 0.07 0.72 5.32 -51.93 -0.28 0.45 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.49 7.79 -51.93 -0.40 0.08 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.56 7.84 -51.93 -0.41 0.16 16 35 H 0.07 0.60 6.72 -51.93 -0.35 0.25 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 39 H 0.40 3.93 6.34 -40.82 -0.26 3.67 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.96 8.14 -51.94 -0.42 0.54 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -32.35 363.84 -8.69 -41.04 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.64 Total: 6.54 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.77 Total: -6.14 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.17 Total: -55.48 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.35 -8.69 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160978363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.473 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds