Wall clock time and date at job start Tue Mar 31 2020 05:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46951 * 2 1 4 4 H 1.09000 * 110.05816 * 306.41392 * 3 2 1 5 5 C 1.54269 * 110.03261 * 67.83309 * 3 2 1 6 6 C 1.54885 * 104.19417 * 142.89710 * 5 3 2 7 7 C 1.54894 * 102.75041 * 322.05309 * 6 5 3 8 8 C 1.53871 * 110.03104 * 184.99803 * 3 2 1 9 9 C 1.53004 * 110.07504 * 0.02562 * 8 3 2 10 10 C 1.50708 * 110.03156 * 121.42835 * 8 3 2 11 11 O 1.21277 * 119.99772 * 358.62285 * 10 8 3 12 12 N 1.34774 * 119.99715 * 178.62060 * 10 8 3 13 13 C 1.46505 * 119.99513 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.47060 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47301 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72430 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 H 1.08996 * 109.47028 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47087 * 300.00212 * 1 2 3 27 27 H 1.09001 * 109.47302 * 60.00015 * 1 2 3 28 28 H 1.08995 * 109.47087 * 239.99788 * 2 1 3 29 29 H 1.09004 * 109.46786 * 119.99439 * 2 1 3 30 30 H 1.08993 * 110.48566 * 24.21749 * 5 3 2 31 31 H 1.09004 * 110.48471 * 261.57187 * 5 3 2 32 32 H 1.09004 * 110.75656 * 203.74668 * 6 5 3 33 33 H 1.08996 * 110.76243 * 80.36910 * 6 5 3 34 34 H 1.08998 * 110.48609 * 279.27283 * 7 6 5 35 35 H 1.08998 * 110.59883 * 156.67941 * 7 6 5 36 36 H 1.08996 * 109.47074 * 180.71551 * 9 8 3 37 37 H 1.08997 * 109.46686 * 300.71891 * 9 8 3 38 38 H 1.09000 * 109.46928 * 60.71356 * 9 8 3 39 39 H 0.96995 * 120.00583 * 0.02562 * 12 10 8 40 40 H 1.08990 * 109.47414 * 59.99970 * 13 12 10 41 41 H 1.09002 * 109.47037 * 299.99282 * 13 12 10 42 42 H 1.09004 * 109.47038 * 59.99597 * 14 13 12 43 43 H 1.09000 * 109.46939 * 300.00250 * 14 13 12 44 44 H 1.09004 * 109.47066 * 60.00027 * 15 14 13 45 45 H 1.08994 * 109.46974 * 300.00175 * 15 14 13 46 46 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 47 47 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5916 1.9976 -0.8240 5 6 1.7006 2.1230 1.3422 6 6 2.9288 3.0202 1.6345 7 6 4.1124 2.1497 1.1441 8 6 3.5735 1.4594 -0.1259 9 6 4.1091 0.0288 -0.2125 10 6 3.9824 2.2381 -1.3498 11 8 3.1360 2.7158 -2.0753 12 7 5.2885 2.4037 -1.6378 13 6 5.6860 3.1611 -2.8272 14 6 7.2126 3.1994 -2.9208 15 6 7.6278 3.9899 -4.1633 16 7 9.0895 4.0270 -4.2526 17 6 9.6956 4.6788 -5.2933 18 1 9.0959 5.1693 -6.0458 19 6 11.0806 4.7091 -5.3811 20 7 11.6630 5.3360 -6.3810 21 14 12.1177 3.8601 -4.0799 22 1 12.3707 2.4548 -4.4878 23 1 13.4117 4.5740 -3.9349 24 1 11.3952 3.8766 -2.7826 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.5773 1.3773 2.1275 31 1 0.7998 2.7292 1.2455 32 1 3.0144 3.2220 2.7023 33 1 2.8721 3.9495 1.0679 34 1 4.3785 1.4082 1.8974 35 1 4.9732 2.7734 0.9032 36 1 5.1962 0.0519 -0.2885 37 1 3.8190 -0.5224 0.6820 38 1 3.6936 -0.4621 -1.0925 39 1 5.9654 2.0213 -1.0577 40 1 5.3012 4.1783 -2.7555 41 1 5.2790 2.6804 -3.7168 42 1 7.5979 2.1822 -2.9923 43 1 7.6193 3.6802 -2.0311 44 1 7.2425 5.0071 -4.0922 45 1 7.2211 3.5086 -5.0527 46 1 9.6281 3.5862 -3.5769 47 1 12.6309 5.3575 -6.4422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160978377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:01 Heat of formation + Delta-G solvation = -55.741149 kcal Electronic energy + Delta-G solvation = -22537.776622 eV Core-core repulsion = 19333.525389 eV Total energy + Delta-G solvation = -3204.251233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91213 -38.13473 -36.11928 -34.54863 -33.48453 -32.37881 -31.59913 -29.88843 -27.86996 -26.00218 -25.28180 -23.51407 -22.30734 -21.74053 -21.26567 -20.36646 -18.67151 -17.57774 -17.17210 -16.15330 -15.91552 -15.29539 -15.18875 -14.81726 -14.42370 -14.15807 -14.00034 -13.90193 -13.50480 -13.49070 -12.82930 -12.78847 -12.62165 -12.41518 -12.03874 -11.80706 -11.76767 -11.35042 -11.29748 -11.19169 -11.08026 -11.01796 -10.94835 -10.79165 -10.71664 -10.66107 -10.52645 -10.17664 -9.70162 -9.59785 -9.09037 -8.91615 -7.25770 -5.77989 -3.14158 2.57842 3.08645 3.35190 3.37458 3.43380 4.11646 4.21991 4.37705 4.57331 4.75427 4.77366 4.86659 4.94473 4.97629 5.03531 5.07988 5.16427 5.21047 5.33742 5.36797 5.45706 5.49446 5.52226 5.53102 5.54692 5.59868 5.65073 5.72973 5.78280 5.84284 5.86919 5.91538 5.94154 5.95893 5.98115 6.06323 6.13946 6.25220 6.43201 6.67495 6.70653 7.43663 7.98167 8.16352 8.40777 9.19491 9.91566 10.11086 11.40385 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034188 B = 0.002727 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.806984 B =10265.087151 C =10441.587595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.083 4.083 4 H 0.098 0.902 5 C -0.116 4.116 6 C -0.127 4.127 7 C -0.114 4.114 8 C -0.082 4.082 9 C -0.140 4.140 10 C 0.523 3.477 11 O -0.539 6.539 12 N -0.727 5.727 13 C 0.122 3.878 14 C -0.141 4.141 15 C 0.161 3.839 16 N -0.757 5.757 17 C -0.246 4.246 18 H 0.091 0.909 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.887 3.113 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.399 0.601 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.388 -12.012 19.731 30.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.102 4.102 4 H 0.116 0.884 5 C -0.153 4.153 6 C -0.164 4.164 7 C -0.151 4.151 8 C -0.085 4.085 9 C -0.197 4.197 10 C 0.309 3.691 11 O -0.415 6.415 12 N -0.378 5.378 13 C -0.002 4.002 14 C -0.180 4.180 15 C 0.033 3.967 16 N -0.403 5.403 17 C -0.375 4.375 18 H 0.109 0.891 19 C -0.193 4.193 20 N -0.582 5.582 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.962 -11.515 18.962 30.521 hybrid contribution 1.340 -0.703 1.060 1.848 sum -19.621 -12.219 20.022 30.580 Atomic orbital electron populations 1.21800 0.95987 1.01331 1.01946 1.21751 0.95727 0.96059 1.01906 1.21871 0.92140 0.96843 0.99345 0.88397 1.22426 0.97937 0.98379 0.96592 1.22497 0.94565 0.98460 1.00880 1.22498 0.98334 0.98897 0.95403 1.21435 0.97555 0.95960 0.93527 1.21995 1.00733 0.94018 1.02990 1.20443 0.82304 0.79965 0.86428 1.90663 1.50434 1.49505 1.50939 1.46057 1.07284 1.56075 1.28423 1.21337 0.95095 0.96422 0.87315 1.21991 0.93550 1.01772 1.00644 1.20495 0.85384 0.96980 0.93864 1.42689 1.00945 1.66545 1.30085 1.19075 0.90514 1.26480 1.01466 0.89149 1.24693 0.96305 1.00397 0.97884 1.69702 1.09299 1.47402 1.31766 0.86512 0.80319 0.79517 0.81937 1.21074 1.21692 1.20394 0.92991 0.92748 0.92658 0.91650 0.91904 0.91542 0.91599 0.91304 0.91365 0.90430 0.91199 0.92380 0.91051 0.91676 0.76677 0.91261 0.91243 0.91386 0.91394 0.95235 0.95183 0.80700 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.77 37.16 0.36 -0.70 16 2 C -0.12 -0.86 4.11 -26.73 -0.11 -0.97 16 3 C -0.08 -0.74 2.53 -89.50 -0.23 -0.97 16 4 H 0.10 1.15 6.39 -51.93 -0.33 0.82 16 5 C -0.12 -0.87 5.53 -25.07 -0.14 -1.01 16 6 C -0.13 -0.97 6.91 -24.74 -0.17 -1.15 16 7 C -0.11 -0.85 5.85 -25.07 -0.15 -0.99 16 8 C -0.08 -0.72 0.77 -154.54 -0.12 -0.83 16 9 C -0.14 -0.99 7.09 37.16 0.26 -0.73 16 10 C 0.52 6.36 6.44 -10.98 -0.07 6.29 16 11 O -0.54 -8.65 15.21 5.56 0.08 -8.56 16 12 N -0.73 -8.04 5.14 -60.29 -0.31 -8.35 16 13 C 0.12 1.59 5.67 -4.04 -0.02 1.57 16 14 C -0.14 -2.01 5.44 -26.73 -0.15 -2.15 16 15 C 0.16 3.06 6.26 -4.04 -0.03 3.04 16 16 N -0.76 -18.08 5.41 -59.91 -0.32 -18.40 16 17 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 18 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 19 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 20 N -0.93 -29.56 13.97 55.49 0.78 -28.78 16 21 Si 0.89 22.04 27.74 -169.99 -4.71 17.33 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.35 7.51 -51.93 -0.39 -0.04 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.51 6.45 -51.93 -0.33 0.18 16 29 H 0.06 0.39 6.89 -51.93 -0.36 0.04 16 30 H 0.07 0.43 7.76 -51.93 -0.40 0.02 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.46 7.84 -51.93 -0.41 0.06 16 35 H 0.07 0.54 7.40 -51.93 -0.38 0.15 16 36 H 0.06 0.37 7.59 -51.93 -0.39 -0.02 16 37 H 0.07 0.41 6.83 -51.93 -0.35 0.05 16 38 H 0.06 0.50 6.67 -51.93 -0.35 0.16 16 39 H 0.40 3.47 7.69 -40.82 -0.31 3.16 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.36 8.27 5.53 -40.82 -0.23 8.04 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -33.35 361.01 -8.34 -41.69 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.49 Total: 5.47 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.80 Total: -5.82 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.14 Total: -55.54 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.35 -8.34 -41.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160978377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.053 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds