Wall clock time and date at job start Tue Mar 31 2020 05:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46951 * 2 1 4 4 H 1.09000 * 110.05816 * 306.41392 * 3 2 1 5 5 C 1.54269 * 110.03261 * 67.83309 * 3 2 1 6 6 C 1.54885 * 104.19417 * 142.89710 * 5 3 2 7 7 C 1.54894 * 102.75041 * 322.05309 * 6 5 3 8 8 C 1.53871 * 110.03104 * 184.99803 * 3 2 1 9 9 C 1.53004 * 110.07504 * 0.02562 * 8 3 2 10 10 C 1.50708 * 110.03156 * 121.42835 * 8 3 2 11 11 O 1.21277 * 119.99772 * 358.62285 * 10 8 3 12 12 N 1.34774 * 119.99715 * 178.62060 * 10 8 3 13 13 C 1.46505 * 119.99513 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.47060 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47301 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72430 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 H 1.08996 * 109.47028 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47087 * 300.00212 * 1 2 3 27 27 H 1.09001 * 109.47302 * 60.00015 * 1 2 3 28 28 H 1.08995 * 109.47087 * 239.99788 * 2 1 3 29 29 H 1.09004 * 109.46786 * 119.99439 * 2 1 3 30 30 H 1.08993 * 110.48566 * 24.21749 * 5 3 2 31 31 H 1.09004 * 110.48471 * 261.57187 * 5 3 2 32 32 H 1.09004 * 110.75656 * 203.74668 * 6 5 3 33 33 H 1.08996 * 110.76243 * 80.36910 * 6 5 3 34 34 H 1.08998 * 110.48609 * 279.27283 * 7 6 5 35 35 H 1.08998 * 110.59883 * 156.67941 * 7 6 5 36 36 H 1.08996 * 109.47074 * 180.71551 * 9 8 3 37 37 H 1.08997 * 109.46686 * 300.71891 * 9 8 3 38 38 H 1.09000 * 109.46928 * 60.71356 * 9 8 3 39 39 H 0.96995 * 120.00583 * 0.02562 * 12 10 8 40 40 H 1.08990 * 109.47414 * 59.99970 * 13 12 10 41 41 H 1.09002 * 109.47037 * 299.99282 * 13 12 10 42 42 H 1.09004 * 109.47038 * 59.99597 * 14 13 12 43 43 H 1.09000 * 109.46939 * 300.00250 * 14 13 12 44 44 H 1.09004 * 109.47066 * 60.00027 * 15 14 13 45 45 H 1.08994 * 109.46974 * 300.00175 * 15 14 13 46 46 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 47 47 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5916 1.9976 -0.8240 5 6 1.7006 2.1230 1.3422 6 6 2.9288 3.0202 1.6345 7 6 4.1124 2.1497 1.1441 8 6 3.5735 1.4594 -0.1259 9 6 4.1091 0.0288 -0.2125 10 6 3.9824 2.2381 -1.3498 11 8 3.1360 2.7158 -2.0753 12 7 5.2885 2.4037 -1.6378 13 6 5.6860 3.1611 -2.8272 14 6 7.2126 3.1994 -2.9208 15 6 7.6278 3.9899 -4.1633 16 7 9.0895 4.0270 -4.2526 17 6 9.6956 4.6788 -5.2933 18 1 9.0959 5.1693 -6.0458 19 6 11.0806 4.7091 -5.3811 20 7 11.6630 5.3360 -6.3810 21 14 12.1177 3.8601 -4.0799 22 1 12.3707 2.4548 -4.4878 23 1 13.4117 4.5740 -3.9349 24 1 11.3952 3.8766 -2.7826 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.5773 1.3773 2.1275 31 1 0.7998 2.7292 1.2455 32 1 3.0144 3.2220 2.7023 33 1 2.8721 3.9495 1.0679 34 1 4.3785 1.4082 1.8974 35 1 4.9732 2.7734 0.9032 36 1 5.1962 0.0519 -0.2885 37 1 3.8190 -0.5224 0.6820 38 1 3.6936 -0.4621 -1.0925 39 1 5.9654 2.0213 -1.0577 40 1 5.3012 4.1783 -2.7555 41 1 5.2790 2.6804 -3.7168 42 1 7.5979 2.1822 -2.9923 43 1 7.6193 3.6802 -2.0311 44 1 7.2425 5.0071 -4.0922 45 1 7.2211 3.5086 -5.0527 46 1 9.6281 3.5862 -3.5769 47 1 12.6309 5.3575 -6.4422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160978377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:01 Heat of formation + Delta-G solvation = -77.710501 kcal Electronic energy + Delta-G solvation = -22538.729284 eV Core-core repulsion = 19333.525389 eV Total energy + Delta-G solvation = -3205.203895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.72861 -38.99044 -37.57729 -36.00974 -34.23386 -33.79984 -32.73797 -31.36975 -28.47442 -27.27542 -26.17800 -24.56104 -23.65676 -22.71904 -22.52476 -21.20138 -19.79823 -19.25252 -18.01444 -17.22213 -16.90290 -16.61437 -16.14986 -15.97401 -15.57013 -15.24150 -15.17736 -14.83988 -14.66132 -14.45179 -14.09639 -13.93417 -13.79718 -13.30607 -13.11333 -12.88774 -12.58813 -12.55337 -12.42648 -12.31389 -12.11351 -12.02806 -11.93173 -11.88105 -11.81542 -11.64967 -11.49982 -11.28714 -11.14406 -10.99459 -10.65840 -10.11796 -9.33749 -8.04392 -5.39805 1.37721 1.43298 1.50687 1.63761 2.14944 2.48324 3.26604 3.46420 3.53294 3.59054 3.70386 4.04277 4.05709 4.18989 4.21384 4.26776 4.30877 4.38617 4.46266 4.51743 4.60181 4.67934 4.68676 4.76913 4.78770 4.85803 4.90051 4.97790 4.98287 5.04320 5.10786 5.18847 5.21544 5.25602 5.25822 5.28791 5.38376 5.40577 5.41655 5.49523 5.63671 5.73022 6.18988 6.55261 7.05716 7.24828 7.79852 8.01294 9.17104 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034188 B = 0.002727 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.806984 B =10265.087151 C =10441.587595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.086 4.086 4 H 0.060 0.940 5 C -0.112 4.112 6 C -0.129 4.129 7 C -0.110 4.110 8 C -0.077 4.077 9 C -0.139 4.139 10 C 0.517 3.483 11 O -0.586 6.586 12 N -0.716 5.716 13 C 0.131 3.869 14 C -0.121 4.121 15 C 0.154 3.846 16 N -0.758 5.758 17 C -0.243 4.243 18 H 0.052 0.948 19 C -0.068 4.068 20 N -0.985 5.985 21 Si 0.964 3.036 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.245 1.245 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.414 0.586 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.023 0.977 45 H 0.024 0.976 46 H 0.369 0.631 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.027 -14.403 23.417 34.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.105 4.105 4 H 0.079 0.921 5 C -0.149 4.149 6 C -0.167 4.167 7 C -0.147 4.147 8 C -0.080 4.080 9 C -0.196 4.196 10 C 0.305 3.695 11 O -0.466 6.466 12 N -0.368 5.368 13 C 0.006 3.994 14 C -0.159 4.159 15 C 0.028 3.972 16 N -0.404 5.404 17 C -0.374 4.374 18 H 0.070 0.930 19 C -0.259 4.259 20 N -0.635 5.635 21 Si 0.790 3.210 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.170 1.170 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.251 0.749 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.042 0.958 46 H 0.203 0.797 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.628 -13.934 22.694 33.685 hybrid contribution 1.113 0.115 -0.193 1.135 sum -19.515 -13.819 22.501 32.834 Atomic orbital electron populations 1.21803 0.95916 1.01852 1.01510 1.21736 0.95804 0.94985 1.02500 1.21837 0.92242 0.97554 0.98831 0.92121 1.22417 0.97628 0.98625 0.96255 1.22515 0.94946 0.97587 1.01623 1.22543 0.97878 0.99261 0.95031 1.21478 0.97503 0.96704 0.92321 1.22028 1.01333 0.92555 1.03651 1.21172 0.81924 0.79437 0.86991 1.90650 1.51702 1.51467 1.52737 1.45906 1.07560 1.55471 1.27827 1.21070 0.94322 0.96076 0.87938 1.21753 0.93927 1.01775 0.98443 1.20645 0.82816 0.97517 0.96265 1.42644 1.02838 1.65981 1.28941 1.19041 0.90644 1.25928 1.01796 0.93018 1.25649 0.97808 1.01729 1.00761 1.69905 1.09580 1.49583 1.34451 0.85281 0.77800 0.78047 0.79862 1.20137 1.22239 1.16954 0.91945 0.92061 0.94287 0.92409 0.89791 0.89486 0.92272 0.89514 0.93714 0.87765 0.91361 0.91242 0.88832 0.92685 0.74861 0.92431 0.92336 0.89829 0.89963 0.95903 0.95799 0.79711 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.77 71.98 0.70 -1.26 16 2 C -0.11 -1.47 4.11 30.60 0.13 -1.34 16 3 C -0.09 -1.45 2.53 -10.07 -0.03 -1.48 16 4 H 0.06 1.51 6.39 -2.39 -0.02 1.49 16 5 C -0.11 -1.49 5.53 31.67 0.18 -1.31 16 6 C -0.13 -1.75 6.91 31.89 0.22 -1.53 16 7 C -0.11 -1.30 5.85 31.67 0.19 -1.12 16 8 C -0.08 -1.21 0.77 -52.20 -0.04 -1.25 16 9 C -0.14 -1.53 7.09 71.98 0.51 -1.02 16 10 C 0.52 12.28 6.44 87.66 0.56 12.85 16 11 O -0.59 -19.47 15.21 -3.02 -0.05 -19.52 16 12 N -0.72 -14.64 5.14 -463.05 -2.38 -17.02 16 13 C 0.13 3.29 5.67 86.38 0.49 3.78 16 14 C -0.12 -3.15 5.44 30.59 0.17 -2.98 16 15 C 0.15 5.78 6.26 86.38 0.54 6.32 16 16 N -0.76 -35.28 5.41 -343.46 -1.86 -37.14 16 17 C -0.24 -14.15 10.47 84.03 0.88 -13.27 16 18 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 19 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 20 N -0.99 -63.81 13.97 21.65 0.30 -63.51 16 21 Si 0.96 44.71 27.74 68.60 1.90 46.61 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.25 -9.97 6.52 99.48 0.65 -9.32 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.69 7.51 -2.39 -0.02 0.67 16 27 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.84 6.45 -2.39 -0.02 0.83 16 29 H 0.08 0.75 6.89 -2.38 -0.02 0.73 16 30 H 0.09 0.82 7.76 -2.39 -0.02 0.80 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 0.74 7.84 -2.39 -0.02 0.72 16 35 H 0.07 0.85 7.40 -2.39 -0.02 0.83 16 36 H 0.07 0.62 7.59 -2.39 -0.02 0.60 16 37 H 0.09 0.65 6.83 -2.39 -0.02 0.63 16 38 H 0.05 0.74 6.67 -2.39 -0.02 0.72 16 39 H 0.41 5.92 7.69 -92.71 -0.71 5.21 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 44 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.37 15.81 5.53 -92.71 -0.51 15.30 16 47 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 Total: -1.00 -74.95 361.01 2.55 -72.41 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.34 Total: 25.35 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 4.96 Total: -7.20 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -3.93 Total: -117.66 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.90 Total: 46.61 kcal Total: -74.95 2.55 -72.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160978377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.305 kcal (2) G-P(sol) polarization free energy of solvation -74.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds