Wall clock time and date at job start Tue Mar 31 2020 05:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47314 * 2 1 4 4 H 1.09007 * 110.01712 * 52.85872 * 3 2 1 5 5 C 1.54262 * 110.03234 * 291.47475 * 3 2 1 6 6 C 1.54962 * 104.15964 * 217.13519 * 5 3 2 7 7 C 1.54882 * 102.77849 * 37.88637 * 6 5 3 8 8 C 1.53869 * 110.03273 * 174.25346 * 3 2 1 9 9 C 1.53002 * 110.03258 * 238.61758 * 8 3 2 10 10 C 1.50693 * 110.03462 * 359.97438 * 8 3 2 11 11 O 1.21276 * 120.00392 * 247.45329 * 10 8 3 12 12 N 1.34774 * 119.99944 * 67.45284 * 10 8 3 13 13 C 1.46500 * 120.00144 * 185.03252 * 12 10 8 14 14 C 1.53003 * 109.47328 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47345 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.47506 * 179.97438 * 15 14 13 17 17 C 1.36930 * 120.00161 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00524 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00009 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00086 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47300 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47124 * 120.00165 * 21 19 17 24 24 H 1.48501 * 109.47084 * 239.99769 * 21 19 17 25 25 H 1.09001 * 109.46909 * 60.00314 * 1 2 3 26 26 H 1.08999 * 109.47013 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47022 * 300.00106 * 1 2 3 28 28 H 1.09000 * 109.47022 * 239.99893 * 2 1 3 29 29 H 1.09001 * 109.46909 * 119.99686 * 2 1 3 30 30 H 1.09006 * 110.48632 * 335.78157 * 5 3 2 31 31 H 1.09000 * 110.49335 * 98.42199 * 5 3 2 32 32 H 1.08996 * 110.72000 * 279.57061 * 6 5 3 33 33 H 1.09010 * 110.92260 * 156.29438 * 6 5 3 34 34 H 1.08999 * 110.48948 * 203.40834 * 7 6 5 35 35 H 1.09004 * 110.60046 * 80.81526 * 7 6 5 36 36 H 1.08999 * 109.47027 * 60.00048 * 9 8 3 37 37 H 1.09005 * 109.47130 * 180.02562 * 9 8 3 38 38 H 1.09008 * 109.47251 * 300.00133 * 9 8 3 39 39 H 0.97002 * 120.00278 * 5.03631 * 12 10 8 40 40 H 1.09001 * 109.47281 * 299.99693 * 13 12 10 41 41 H 1.08995 * 109.47004 * 60.00168 * 13 12 10 42 42 H 1.09001 * 109.46587 * 299.99994 * 14 13 12 43 43 H 1.08998 * 109.47131 * 59.99561 * 14 13 12 44 44 H 1.09000 * 109.46801 * 299.99927 * 15 14 13 45 45 H 1.08998 * 109.47566 * 59.99581 * 15 14 13 46 46 H 0.97006 * 119.99437 * 359.97438 * 16 15 14 47 47 H 0.96997 * 119.99846 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5814 2.0004 0.8165 5 6 1.7160 2.1175 -1.3487 6 6 2.9490 3.0129 -1.6303 7 6 4.1263 2.1446 -1.1216 8 6 3.5718 1.4599 0.1447 9 6 3.9717 2.2549 1.3894 10 6 4.0973 0.0509 0.2425 11 8 4.5926 -0.3412 1.2777 12 7 4.0166 -0.7736 -0.8206 13 6 4.4254 -2.1747 -0.6936 14 6 4.2363 -2.8848 -2.0356 15 6 4.6625 -4.3482 -1.9028 16 7 4.4809 -5.0283 -3.1875 17 6 4.7990 -6.3544 -3.3112 18 1 5.1833 -6.8991 -2.4616 19 6 4.6263 -6.9990 -4.5285 20 7 4.1565 -6.3356 -5.5636 21 14 5.0595 -8.8082 -4.6970 22 1 5.5622 -9.3201 -3.3968 23 1 3.8496 -9.5719 -5.0947 24 1 6.1105 -8.9711 -5.7335 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6016 1.3686 -2.1324 31 1 0.8142 2.7240 -1.2649 32 1 2.8853 3.9448 -1.0685 33 1 3.0493 3.2129 -2.6972 34 1 4.9827 2.7712 -0.8725 35 1 4.4039 1.3998 -1.8675 36 1 3.5335 1.7910 2.2731 37 1 5.0577 2.2618 1.4828 38 1 3.6086 3.2787 1.2987 39 1 3.6880 -0.4394 -1.6698 40 1 5.4748 -2.2221 -0.4026 41 1 3.8153 -2.6637 0.0658 42 1 3.1870 -2.8374 -2.3269 43 1 4.8466 -2.3956 -2.7947 44 1 5.7117 -4.3959 -1.6111 45 1 4.0519 -4.8371 -1.1437 46 1 4.1353 -4.5391 -3.9506 47 1 4.0362 -6.7859 -6.4143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160978378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:04 Heat of formation + Delta-G solvation = -56.496761 kcal Electronic energy + Delta-G solvation = -22981.187604 eV Core-core repulsion = 19776.903606 eV Total energy + Delta-G solvation = -3204.283999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01617 -37.91585 -36.04946 -34.37004 -33.53686 -31.98368 -31.38606 -29.56847 -27.91904 -26.31924 -24.89741 -23.02325 -22.52778 -21.64032 -21.15062 -20.55869 -19.11829 -17.12947 -16.75028 -16.16414 -15.74936 -15.38767 -14.99118 -14.70866 -14.40436 -14.29872 -13.73730 -13.52564 -13.29183 -13.02171 -12.85688 -12.74328 -12.65636 -12.28360 -12.11895 -11.77869 -11.63758 -11.40301 -11.33771 -10.96825 -10.95430 -10.89144 -10.84840 -10.76659 -10.68429 -10.61278 -10.59190 -10.04999 -9.75961 -9.58634 -8.90743 -8.88149 -6.93619 -5.77707 -3.06467 2.64123 3.18348 3.43358 3.49231 3.51465 4.20286 4.23914 4.31300 4.59041 4.74654 4.88797 4.92725 5.00438 5.07033 5.13236 5.18442 5.26024 5.32438 5.33756 5.38081 5.54827 5.57415 5.58664 5.60806 5.64394 5.67321 5.77421 5.84369 5.86248 5.93539 5.97042 6.02042 6.04998 6.07803 6.09504 6.17119 6.20544 6.32458 6.51613 6.79168 6.83405 7.52686 7.70468 8.25174 8.41303 9.52537 10.09670 10.44421 11.45391 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025292 B = 0.003047 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.810912 B = 9185.967213 C = 9409.255731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.077 4.077 4 H 0.081 0.919 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.083 4.083 9 C -0.123 4.123 10 C 0.528 3.472 11 O -0.544 6.544 12 N -0.727 5.727 13 C 0.122 3.878 14 C -0.137 4.137 15 C 0.156 3.844 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.400 0.600 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.501 22.103 9.974 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.096 4.096 4 H 0.099 0.901 5 C -0.158 4.158 6 C -0.161 4.161 7 C -0.155 4.155 8 C -0.086 4.086 9 C -0.180 4.180 10 C 0.314 3.686 11 O -0.421 6.421 12 N -0.380 5.380 13 C -0.002 4.002 14 C -0.175 4.175 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.235 0.765 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.090 21.612 10.781 24.682 hybrid contribution -0.039 -0.782 -0.846 1.152 sum -5.129 20.830 9.935 23.641 Atomic orbital electron populations 1.21767 0.95559 1.01853 1.01563 1.21996 0.96355 0.95600 1.02989 1.21876 0.92068 0.96962 0.98677 0.90075 1.22515 0.98019 0.98728 0.96564 1.22507 0.94290 0.98167 1.01111 1.22544 0.98504 0.99083 0.95381 1.21556 0.96411 0.92571 0.98048 1.21668 1.01939 0.98575 0.95850 1.20346 0.77786 0.87079 0.83367 1.90689 1.44478 1.77146 1.29766 1.46259 1.66861 1.11268 1.13612 1.21340 1.00619 0.79873 0.98370 1.21936 1.02293 0.97553 0.95724 1.20517 0.97559 0.88964 0.90129 1.42345 1.78716 1.09030 1.07703 1.19295 1.35559 0.86377 0.95788 0.91054 1.24752 1.02099 0.98307 0.95931 1.69671 1.51804 1.35555 1.01286 0.86099 0.77563 0.84982 0.77465 1.20502 1.21846 1.21838 0.92573 0.92590 0.93028 0.90630 0.91848 0.91038 0.91303 0.91310 0.91093 0.90767 0.91013 0.91862 0.92152 0.92101 0.76459 0.91440 0.91517 0.91375 0.91371 0.96080 0.96092 0.78317 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.77 37.16 0.36 -0.91 16 2 C -0.13 -1.26 4.02 -26.73 -0.11 -1.37 16 3 C -0.08 -0.63 2.57 -89.51 -0.23 -0.86 16 4 H 0.08 0.64 7.67 -51.92 -0.40 0.24 16 5 C -0.12 -0.81 5.57 -25.03 -0.14 -0.95 16 6 C -0.12 -0.78 6.91 -24.70 -0.17 -0.95 16 7 C -0.12 -0.91 5.78 -25.07 -0.14 -1.06 16 8 C -0.08 -0.78 0.83 -154.55 -0.13 -0.91 16 9 C -0.12 -1.14 7.47 37.16 0.28 -0.86 16 10 C 0.53 6.70 4.66 -10.99 -0.05 6.65 16 11 O -0.54 -9.06 16.06 5.56 0.09 -8.97 16 12 N -0.73 -8.50 3.54 -60.30 -0.21 -8.71 16 13 C 0.12 1.68 5.68 -4.04 -0.02 1.65 16 14 C -0.14 -2.10 5.44 -26.73 -0.15 -2.24 16 15 C 0.16 3.14 6.26 -4.05 -0.03 3.12 16 16 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 17 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 21 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H 0.06 0.43 7.54 -51.93 -0.39 0.04 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.75 5.71 -51.93 -0.30 0.45 16 29 H 0.06 0.75 7.19 -51.93 -0.37 0.37 16 30 H 0.07 0.50 7.75 -51.93 -0.40 0.09 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.07 0.55 7.84 -51.93 -0.41 0.15 16 35 H 0.07 0.57 6.54 -51.93 -0.34 0.23 16 36 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 39 H 0.40 3.90 6.51 -40.82 -0.27 3.63 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 47 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -32.37 364.06 -8.69 -41.06 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.65 Total: 6.46 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -0.77 Total: -6.16 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.18 Total: -55.40 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.37 -8.69 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160978378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.438 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds