Wall clock time and date at job start Tue Mar 31 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47278 * 2 1 4 4 H 1.08995 * 109.46889 * 305.00261 * 3 2 1 5 5 C 1.53005 * 109.46854 * 64.99774 * 3 2 1 6 6 C 1.52998 * 109.47324 * 184.99776 * 3 2 1 7 7 C 1.50694 * 109.47255 * 175.00262 * 6 3 2 8 8 O 1.21285 * 119.99930 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00284 * 180.02562 * 7 6 3 10 10 C 1.46497 * 120.00445 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47416 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46918 * 175.45398 * 11 10 9 13 13 C 1.52994 * 115.54983 * 279.31993 * 12 11 10 14 14 N 1.46497 * 109.47812 * 294.95880 * 13 12 11 15 15 C 1.36934 * 120.00131 * 174.37525 * 14 13 12 16 16 H 1.07993 * 120.00027 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99695 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00009 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99780 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46820 * 59.99735 * 19 17 15 21 21 H 1.48499 * 109.46995 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46891 * 299.99983 * 19 17 15 23 23 C 1.53005 * 117.49606 * 133.62009 * 12 11 10 24 24 C 1.52998 * 117.50011 * 64.99963 * 12 11 10 25 25 H 1.08999 * 109.46780 * 60.00083 * 1 2 3 26 26 H 1.08998 * 109.47311 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47130 * 300.00203 * 1 2 3 28 28 H 1.08999 * 109.47514 * 239.99515 * 2 1 3 29 29 H 1.09008 * 109.46909 * 119.99731 * 2 1 3 30 30 H 1.09008 * 109.46704 * 180.02562 * 5 3 2 31 31 H 1.08996 * 109.47385 * 60.00190 * 5 3 2 32 32 H 1.08994 * 109.47183 * 299.99871 * 5 3 2 33 33 H 1.09006 * 109.46881 * 294.99800 * 6 3 2 34 34 H 1.09003 * 109.46973 * 54.99958 * 6 3 2 35 35 H 0.97004 * 119.99505 * 359.97438 * 9 7 6 36 36 H 1.09005 * 109.46683 * 299.99739 * 10 9 7 37 37 H 1.09003 * 109.47236 * 59.99449 * 10 9 7 38 38 H 1.08999 * 109.47069 * 295.45713 * 11 10 9 39 39 H 1.09004 * 109.47017 * 55.45389 * 11 10 9 40 40 H 1.09005 * 109.47007 * 54.95795 * 13 12 11 41 41 H 1.09006 * 109.47325 * 174.95081 * 13 12 11 42 42 H 0.97005 * 119.99629 * 354.36442 * 14 13 12 43 43 H 0.96999 * 119.99922 * 180.02562 * 18 17 15 44 44 H 1.09002 * 117.49468 * 359.97438 * 23 12 11 45 45 H 1.08996 * 117.49660 * 145.01911 * 23 12 11 46 46 H 1.09000 * 117.50040 * 214.97861 * 24 12 11 47 47 H 1.09007 * 117.49664 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 6 4.0570 2.8633 -0.2491 8 8 3.2660 3.7826 -0.2382 9 7 5.3761 3.1107 -0.3727 10 6 5.8545 4.4901 -0.4933 11 6 7.3794 4.4920 -0.6188 12 6 7.8696 5.9214 -0.8582 13 6 7.7596 6.4241 -2.2990 14 7 8.6472 5.6383 -3.1597 15 6 8.6330 5.8307 -4.5154 16 1 7.9672 6.5614 -4.9502 17 6 9.4745 5.0863 -5.3308 18 7 10.2862 4.1961 -4.8009 19 14 9.4547 5.3483 -7.1803 20 1 9.8136 6.7567 -7.4846 21 1 10.4384 4.4380 -7.8197 22 1 8.0967 5.0588 -7.7067 23 6 9.0593 6.4085 -0.0285 24 6 7.6544 6.9393 0.2636 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9982 3.1544 1.3072 31 1 2.0698 1.5875 2.1492 32 1 0.5489 2.1253 1.3969 33 1 4.0029 0.9836 0.7598 34 1 3.8571 0.8800 -1.0113 35 1 6.0087 2.3754 -0.3818 36 1 5.4161 4.9506 -1.3787 37 1 5.5625 5.0547 0.3922 38 1 7.8200 4.1058 0.3003 39 1 7.6757 3.8610 -1.4569 40 1 6.7310 6.3171 -2.6436 41 1 8.0492 7.4742 -2.3406 42 1 9.2450 4.9818 -2.7692 43 1 10.8745 3.6763 -5.3706 44 1 9.4924 5.7106 0.6881 45 1 9.7639 7.0872 -0.5092 46 1 7.4347 7.9672 -0.0248 47 1 7.1632 6.5907 1.1721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164284685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:52 Heat of formation + Delta-G solvation = -34.132092 kcal Electronic energy + Delta-G solvation = -22172.892687 eV Core-core repulsion = 18969.578494 eV Total energy + Delta-G solvation = -3203.314194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.88634 -38.30961 -36.57191 -34.71070 -33.90170 -31.20417 -30.75927 -29.86880 -27.61201 -25.93583 -24.45574 -23.05880 -22.72253 -21.73205 -20.63742 -19.94389 -18.49549 -17.10399 -16.82789 -16.05350 -15.73768 -15.29803 -14.97906 -14.71247 -14.42624 -14.11635 -13.89039 -13.61559 -13.21742 -13.01048 -12.69882 -12.61639 -12.25179 -12.09714 -12.00304 -11.86900 -11.54610 -11.38291 -11.10781 -11.02168 -10.92934 -10.81774 -10.79129 -10.72920 -10.57844 -10.16586 -9.90210 -9.70808 -9.58006 -9.30411 -8.93337 -8.82968 -6.89393 -5.75365 -3.03075 2.71867 3.25089 3.45029 3.49219 3.50255 4.07489 4.58523 4.59998 4.62437 4.69993 5.00129 5.04065 5.08250 5.12357 5.17834 5.29483 5.33995 5.38560 5.47211 5.51191 5.56410 5.61097 5.61499 5.70184 5.76997 5.78979 5.86814 5.88344 5.92432 6.01845 6.18386 6.21729 6.23825 6.25322 6.34679 6.44930 6.47430 6.52375 6.61229 6.77786 6.86106 7.57928 7.71152 8.31179 8.43939 9.55438 10.13899 10.49815 11.47485 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015058 B = 0.003330 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.015048 B = 8405.784523 C = 9749.911726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.541 6.541 9 N -0.729 5.729 10 C 0.125 3.875 11 C -0.091 4.091 12 C -0.119 4.119 13 C 0.188 3.812 14 N -0.727 5.727 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.165 4.165 24 C -0.178 4.178 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.026 0.974 41 H 0.016 0.984 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.930 -6.880 14.476 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.097 0.903 5 C -0.211 4.211 6 C -0.179 4.179 7 C 0.297 3.703 8 O -0.418 6.418 9 N -0.381 5.381 10 C 0.002 3.998 11 C -0.128 4.128 12 C -0.120 4.120 13 C 0.060 3.940 14 N -0.371 5.371 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.202 4.202 24 C -0.215 4.215 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.044 0.956 41 H 0.034 0.966 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.535 -6.144 14.310 20.633 hybrid contribution 0.707 -0.466 -0.977 1.293 sum -12.828 -6.610 13.333 19.647 Atomic orbital electron populations 1.21808 0.95803 1.01354 1.02102 1.21599 0.96134 0.96188 1.01884 1.20914 0.92830 0.95894 0.99899 0.90347 1.21992 1.01053 1.02194 0.95832 1.21780 0.97760 0.94202 1.04152 1.20676 0.82124 0.91612 0.75919 1.90662 1.54628 1.46724 1.49824 1.46114 1.07617 1.09717 1.74628 1.21337 0.94430 0.82033 1.02040 1.21251 0.93314 0.95867 1.02409 1.21566 1.02624 0.93906 0.93876 1.20179 0.94273 0.93807 0.85730 1.42281 1.45908 1.45821 1.03110 1.19196 1.17585 1.17001 0.83112 0.91334 1.24712 0.99235 0.99114 0.97907 1.69647 1.27276 1.27191 1.34198 0.86279 0.77136 0.77263 0.85601 1.21320 1.21713 1.21294 1.22965 0.91129 1.03595 1.02514 1.22970 1.00130 0.98992 0.99432 0.92684 0.92962 0.92449 0.91968 0.92047 0.90700 0.93555 0.92826 0.89102 0.88872 0.76625 0.91087 0.91930 0.92046 0.89486 0.95583 0.96586 0.78168 0.93544 0.89347 0.88608 0.88962 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.12 -0.93 5.40 -26.73 -0.14 -1.07 16 3 C -0.08 -0.74 2.04 -90.62 -0.18 -0.92 16 4 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 5 C -0.15 -1.54 8.69 37.16 0.32 -1.22 16 6 C -0.14 -1.29 5.17 -27.89 -0.14 -1.44 16 7 C 0.51 6.64 7.55 -10.99 -0.08 6.56 16 8 O -0.54 -8.98 13.97 5.55 0.08 -8.91 16 9 N -0.73 -8.97 5.56 -60.29 -0.33 -9.31 16 10 C 0.12 1.77 5.51 -4.04 -0.02 1.75 16 11 C -0.09 -1.32 5.24 -26.73 -0.14 -1.46 16 12 C -0.12 -1.91 1.52 -154.51 -0.23 -2.14 16 13 C 0.19 3.83 6.10 -4.05 -0.02 3.80 16 14 N -0.73 -18.25 5.30 -59.91 -0.32 -18.57 16 15 C -0.24 -6.67 9.99 -15.06 -0.15 -6.83 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 19 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.16 -2.44 9.90 -26.73 -0.26 -2.70 16 24 C -0.18 -2.40 9.57 -26.73 -0.26 -2.66 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.07 0.94 5.95 -51.92 -0.31 0.63 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 3.96 8.47 -40.82 -0.35 3.61 16 36 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 37 H 0.06 0.88 7.80 -51.93 -0.41 0.47 16 38 H 0.06 0.77 7.94 -51.93 -0.41 0.36 16 39 H 0.09 1.48 7.64 -51.93 -0.40 1.08 16 40 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 41 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 42 H 0.38 10.09 7.46 -40.82 -0.30 9.78 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 45 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.07 7.98 -51.93 -0.41 0.65 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -31.80 375.88 -8.94 -40.74 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.67 Total: 9.79 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.06 Total: -9.59 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.07 Total: -55.20 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.80 -8.94 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164284685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.608 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds