Wall clock time and date at job start Tue Mar 31 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47308 * 2 1 4 4 H 1.09005 * 109.47155 * 55.00178 * 3 2 1 5 5 C 1.53000 * 109.47204 * 295.00080 * 3 2 1 6 6 C 1.53004 * 109.47317 * 175.00044 * 3 2 1 7 7 C 1.50698 * 109.47437 * 185.00105 * 6 3 2 8 8 O 1.21279 * 119.99925 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99732 * 180.02562 * 7 6 3 10 10 C 1.46503 * 119.99512 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47410 * 175.02399 * 11 10 9 13 13 C 1.53005 * 115.54575 * 278.02857 * 12 11 10 14 14 N 1.46498 * 109.47063 * 303.89551 * 13 12 11 15 15 C 1.36938 * 119.99525 * 175.59037 * 14 13 12 16 16 H 1.08000 * 120.00443 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99736 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00233 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99930 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47153 * 90.00332 * 19 17 15 21 21 H 1.48502 * 109.47229 * 210.00112 * 19 17 15 22 22 H 1.48498 * 109.47641 * 330.00022 * 19 17 15 23 23 C 1.52992 * 117.50012 * 132.32062 * 12 11 10 24 24 C 1.52990 * 60.00245 * 252.51000 * 23 12 11 25 25 H 1.09008 * 109.46852 * 300.00265 * 1 2 3 26 26 H 1.08996 * 109.47287 * 59.99298 * 1 2 3 27 27 H 1.09001 * 109.47400 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46514 * 239.99844 * 2 1 3 29 29 H 1.09004 * 109.46787 * 120.00297 * 2 1 3 30 30 H 1.09002 * 109.47278 * 299.99604 * 5 3 2 31 31 H 1.08996 * 109.47128 * 60.00350 * 5 3 2 32 32 H 1.08999 * 109.47021 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.46619 * 305.00530 * 6 3 2 34 34 H 1.08997 * 109.46761 * 64.99484 * 6 3 2 35 35 H 0.96994 * 120.00106 * 0.02562 * 9 7 6 36 36 H 1.09005 * 109.46977 * 299.99522 * 10 9 7 37 37 H 1.08994 * 109.47348 * 59.99657 * 10 9 7 38 38 H 1.09007 * 109.46778 * 295.01920 * 11 10 9 39 39 H 1.08997 * 109.47555 * 55.01649 * 11 10 9 40 40 H 1.09000 * 109.47108 * 63.90114 * 13 12 11 41 41 H 1.08996 * 109.46588 * 183.89819 * 13 12 11 42 42 H 0.96998 * 120.00654 * 355.60155 * 14 13 12 43 43 H 0.97005 * 120.00250 * 179.97438 * 18 17 15 44 44 H 1.09005 * 117.50268 * 0.02562 * 23 12 11 45 45 H 1.09008 * 117.49741 * 145.02252 * 23 12 11 46 46 H 1.08999 * 117.50510 * 252.51426 * 24 23 12 47 47 H 1.08997 * 117.49940 * 107.48631 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1257 7 6 4.0571 2.8632 0.2493 8 8 3.2662 3.7825 0.2383 9 7 5.3763 3.1105 0.3719 10 6 5.8548 4.4900 0.4925 11 6 7.3797 4.4918 0.6168 12 6 7.8896 5.9344 0.6180 13 6 8.0394 6.5824 -0.7599 14 7 8.9181 5.7587 -1.5939 15 6 9.1285 6.0932 -2.9050 16 1 8.6471 6.9643 -3.3241 17 6 9.9607 5.3124 -3.6955 18 7 10.5471 4.2504 -3.1849 19 14 10.2483 5.7690 -5.4838 20 1 11.4201 6.6760 -5.5808 21 1 10.5083 4.5384 -6.2733 22 1 9.0453 6.4555 -6.0192 23 6 8.9017 6.3249 1.6968 24 6 7.4614 6.8340 1.7791 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0699 1.5875 -2.1492 31 1 0.5490 2.1253 -1.3969 32 1 1.9991 3.1540 -1.3075 33 1 3.8570 0.8798 1.0112 34 1 4.0029 0.9834 -0.7596 35 1 6.0089 2.3753 0.3802 36 1 5.5621 5.0548 -0.3927 37 1 5.4171 4.9502 1.3783 38 1 7.6689 4.0035 1.5475 39 1 7.8136 3.9537 -0.2259 40 1 7.0603 6.6624 -1.2322 41 1 8.4715 7.5768 -0.6486 42 1 9.3508 4.9764 -1.2175 43 1 11.1284 3.7046 -3.7374 44 1 9.2048 5.5541 2.4054 45 1 9.6748 7.0438 1.4249 46 1 7.2867 7.8877 1.5614 47 1 6.8164 6.3982 2.5420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164284686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:55 Heat of formation + Delta-G solvation = -33.514572 kcal Electronic energy + Delta-G solvation = -22261.787201 eV Core-core repulsion = 19058.499785 eV Total energy + Delta-G solvation = -3203.287416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.85638 -38.31607 -36.54275 -34.67281 -33.93125 -31.18189 -30.77768 -29.82595 -27.55744 -25.94115 -24.43179 -23.05306 -22.70000 -21.78029 -20.60594 -19.91305 -18.47054 -17.11730 -16.81555 -16.03035 -15.68971 -15.27889 -15.08902 -14.50161 -14.35402 -14.25714 -13.91591 -13.51898 -13.09672 -13.06414 -12.72845 -12.61018 -12.32153 -12.06733 -11.91823 -11.83812 -11.51101 -11.39109 -11.13263 -10.96814 -10.90715 -10.84076 -10.77023 -10.70531 -10.53685 -10.14768 -9.92111 -9.70274 -9.55548 -9.31165 -8.89950 -8.82737 -6.89794 -5.76135 -3.03740 2.74932 3.28363 3.44033 3.49485 3.50892 4.07094 4.61261 4.61547 4.62977 4.72554 5.00783 5.05785 5.10133 5.12264 5.17975 5.31533 5.35520 5.41877 5.53520 5.54754 5.56465 5.62860 5.63248 5.71604 5.79930 5.80237 5.89073 5.91755 5.91851 6.06159 6.17560 6.20507 6.23895 6.28452 6.41383 6.44199 6.46593 6.56087 6.65417 6.78033 6.84887 7.61346 7.71199 8.34354 8.43207 9.54807 10.12969 10.48679 11.46808 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.003555 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.682503 B = 7874.553956 C = 9310.482368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.076 0.924 5 C -0.155 4.155 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.541 6.541 9 N -0.729 5.729 10 C 0.126 3.874 11 C -0.092 4.092 12 C -0.118 4.118 13 C 0.188 3.812 14 N -0.727 5.727 15 C -0.237 4.237 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.167 4.167 24 C -0.178 4.178 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.026 0.974 41 H 0.017 0.983 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.121 -7.304 11.124 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.213 4.213 6 C -0.179 4.179 7 C 0.297 3.703 8 O -0.419 6.419 9 N -0.380 5.380 10 C 0.003 3.997 11 C -0.130 4.130 12 C -0.119 4.119 13 C 0.060 3.940 14 N -0.372 5.372 15 C -0.368 4.368 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.204 4.204 24 C -0.215 4.215 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.043 0.957 41 H 0.035 0.965 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.702 -6.542 10.945 19.462 hybrid contribution 0.847 -0.399 -0.890 1.291 sum -13.856 -6.941 10.055 18.474 Atomic orbital electron populations 1.21808 0.95823 1.01324 1.02094 1.21599 0.96110 0.96231 1.01876 1.20902 0.92786 0.95814 0.99887 0.90530 1.22003 1.00993 1.02378 0.95877 1.21783 0.97796 0.94186 1.04162 1.20669 0.82148 0.91607 0.75887 1.90657 1.54707 1.46722 1.49812 1.46108 1.07569 1.09711 1.74628 1.21319 0.94191 0.82169 1.02058 1.21263 0.93544 0.95334 1.02828 1.21568 1.03246 0.94762 0.92309 1.20176 0.94041 0.92991 0.86782 1.42303 1.54756 1.31423 1.08685 1.19238 1.22584 1.08073 0.86890 0.91275 1.24709 1.00278 0.97748 0.98263 1.69657 1.35260 1.17752 1.35641 0.86202 0.77925 0.77126 0.85044 1.21781 1.21802 1.20780 1.22994 0.92501 1.03435 1.01452 1.22957 0.98061 0.99664 1.00844 0.92799 0.92355 0.92980 0.91917 0.92117 0.93344 0.92846 0.90603 0.89140 0.88840 0.76607 0.91084 0.92007 0.92095 0.89240 0.95656 0.96480 0.78153 0.93601 0.89338 0.88714 0.88961 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 37.16 0.36 -0.79 16 2 C -0.12 -0.95 5.40 -26.73 -0.14 -1.09 16 3 C -0.08 -0.75 2.04 -90.62 -0.18 -0.93 16 4 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 5 C -0.16 -1.74 8.69 37.16 0.32 -1.41 16 6 C -0.14 -1.35 5.17 -27.88 -0.14 -1.49 16 7 C 0.51 6.83 7.55 -10.99 -0.08 6.75 16 8 O -0.54 -9.16 13.97 5.56 0.08 -9.08 16 9 N -0.73 -9.27 5.56 -60.29 -0.33 -9.60 16 10 C 0.13 1.83 5.49 -4.04 -0.02 1.81 16 11 C -0.09 -1.36 5.20 -26.73 -0.14 -1.50 16 12 C -0.12 -1.90 1.65 -154.51 -0.25 -2.15 16 13 C 0.19 3.82 6.15 -4.04 -0.02 3.80 16 14 N -0.73 -18.20 5.23 -59.91 -0.31 -18.52 16 15 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 19 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 C -0.17 -2.43 9.87 -26.74 -0.26 -2.69 16 24 C -0.18 -2.39 9.57 -26.74 -0.26 -2.64 16 25 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 32 H 0.08 1.06 5.95 -51.93 -0.31 0.75 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.40 4.15 8.47 -40.82 -0.35 3.81 16 36 H 0.07 1.22 7.96 -51.93 -0.41 0.81 16 37 H 0.06 0.88 7.72 -51.93 -0.40 0.48 16 38 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 39 H 0.09 1.56 6.94 -51.93 -0.36 1.20 16 40 H 0.03 0.54 7.96 -51.93 -0.41 0.12 16 41 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 42 H 0.38 10.01 6.80 -40.82 -0.28 9.74 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 45 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 46 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.09 1.07 7.90 -51.93 -0.41 0.66 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -31.72 374.93 -8.93 -40.64 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -8.63 Total: 10.27 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -1.08 Total: -9.63 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.08 Total: -55.32 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.72 -8.93 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164284686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.129 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds