Wall clock time and date at job start Tue Mar 31 2020 05:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 5 5 C 1.52997 * 109.47232 * 294.99885 * 3 2 1 6 6 C 1.53002 * 109.46978 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.46891 * 60.00410 * 6 5 3 8 8 C 1.53000 * 109.47328 * 299.99597 * 7 6 5 9 9 C 1.52997 * 109.47060 * 60.00126 * 8 7 6 10 10 H 1.08998 * 109.47533 * 59.99948 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 9 8 7 12 12 O 1.21283 * 120.00261 * 120.00003 * 11 9 8 13 13 N 1.34777 * 120.00075 * 300.00543 * 11 9 8 14 14 C 1.46500 * 120.00084 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.47249 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47577 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47353 * 180.02562 * 16 15 14 18 18 C 1.36942 * 120.00015 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99736 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00164 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00061 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00057 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47306 * 90.00499 * 22 20 18 24 24 H 1.48504 * 109.47191 * 210.00185 * 22 20 18 25 25 H 1.48499 * 109.47256 * 330.00143 * 22 20 18 26 26 H 1.09002 * 109.47137 * 60.00369 * 1 2 3 27 27 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 29 29 H 1.09008 * 109.47105 * 240.00184 * 2 1 3 30 30 H 1.09006 * 109.47074 * 120.00389 * 2 1 3 31 31 H 1.09002 * 109.47045 * 59.99942 * 5 3 2 32 32 H 1.09001 * 109.47375 * 299.99867 * 5 3 2 33 33 H 1.08992 * 109.47056 * 300.00064 * 6 5 3 34 34 H 1.09004 * 109.47006 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.47368 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.47372 * 59.99964 * 7 6 5 37 37 H 1.09002 * 109.47398 * 180.02562 * 8 7 6 38 38 H 1.09001 * 109.47194 * 300.00476 * 8 7 6 39 39 H 0.96996 * 119.99636 * 359.97438 * 13 11 9 40 40 H 1.09001 * 109.47049 * 299.99628 * 14 13 11 41 41 H 1.09000 * 109.47381 * 59.99594 * 14 13 11 42 42 H 1.09001 * 109.46997 * 299.99913 * 15 14 13 43 43 H 1.08996 * 109.47134 * 59.99161 * 15 14 13 44 44 H 1.09001 * 109.46885 * 299.99981 * 16 15 14 45 45 H 1.08999 * 109.47330 * 59.98970 * 16 15 14 46 46 H 0.96997 * 120.00454 * 359.97438 * 17 16 15 47 47 H 0.97000 * 120.00119 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.1447 3.5692 -1.3070 7 6 3.6695 3.5715 -1.1810 8 6 4.0743 2.8875 0.1263 9 6 3.5648 1.4448 0.1261 10 1 3.9997 0.9060 -0.7157 11 6 3.9630 0.7712 1.4139 12 8 3.1111 0.3324 2.1574 13 7 5.2657 0.6564 1.7397 14 6 5.6528 0.0010 2.9915 15 6 7.1775 0.0030 3.1179 16 6 7.5819 -0.6820 4.4248 17 7 9.0418 -0.6795 4.5462 18 6 9.6387 -1.2418 5.6429 19 1 9.0331 -1.6867 6.4187 20 6 11.0220 -1.2399 5.7577 21 7 11.7600 -0.6973 4.8126 22 14 11.8362 -2.0075 7.2534 23 1 12.1087 -3.4427 6.9868 24 1 13.1138 -1.3054 7.5365 25 1 10.9335 -1.8846 8.4261 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 0.5489 2.1252 -1.3969 32 1 2.0699 1.5875 -2.1492 33 1 1.7097 4.1079 -0.4653 34 1 1.8560 4.0567 -2.2382 35 1 4.0326 4.5993 -1.1812 36 1 4.1045 3.0328 -2.0228 37 1 5.1606 2.8896 0.2163 38 1 3.6393 3.4263 0.9681 39 1 5.9470 1.0071 1.1450 40 1 5.2174 0.5395 3.8332 41 1 5.2900 -1.0268 2.9908 42 1 7.6126 -0.5357 2.2761 43 1 7.5407 1.0307 3.1183 44 1 7.1468 -0.1436 5.2669 45 1 7.2186 -1.7096 4.4240 46 1 9.5858 -0.2796 3.8497 47 1 12.7267 -0.6963 4.8926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169720410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:05 Heat of formation + Delta-G solvation = -69.623088 kcal Electronic energy + Delta-G solvation = -22262.091667 eV Core-core repulsion = 19057.238469 eV Total energy + Delta-G solvation = -3204.853199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.58113 -38.11657 -36.01727 -34.56365 -33.87003 -32.20541 -31.28018 -29.43602 -29.18900 -25.50381 -24.04227 -23.67382 -22.38934 -21.22114 -20.86761 -20.45734 -19.79275 -17.38942 -16.84007 -16.09681 -15.67486 -15.19282 -15.04261 -14.62506 -14.56600 -14.30590 -14.16888 -13.50280 -13.34855 -13.27571 -13.11810 -12.79552 -12.67483 -12.34333 -11.82457 -11.76474 -11.64607 -11.43458 -11.31151 -11.00572 -10.96582 -10.91977 -10.80678 -10.71179 -10.63008 -10.54219 -10.24919 -10.07530 -9.73560 -9.43344 -8.98394 -8.88396 -6.94084 -5.77826 -3.06759 2.62275 3.18535 3.43694 3.48776 3.50571 4.29966 4.36942 4.42309 4.58814 4.78577 4.85315 4.95075 5.04860 5.08697 5.10603 5.15366 5.20681 5.25669 5.32004 5.44102 5.48092 5.53917 5.57120 5.63518 5.72770 5.74173 5.79848 5.80429 5.88555 5.94793 6.00574 6.01853 6.06597 6.07466 6.19165 6.28786 6.31570 6.36125 6.55120 6.78706 6.82962 7.50962 7.69662 8.23776 8.41277 9.52329 10.09452 10.44127 11.45261 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.002507 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.762058 B =11164.743665 C =11809.512611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.064 4.064 4 H 0.076 0.924 5 C -0.116 4.116 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.111 4.111 9 C -0.103 4.103 10 H 0.095 0.905 11 C 0.514 3.486 12 O -0.537 6.537 13 N -0.728 5.728 14 C 0.122 3.878 15 C -0.137 4.137 16 C 0.156 3.844 17 N -0.734 5.734 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.400 0.600 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.634 8.106 -15.885 27.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.082 4.082 4 H 0.094 0.906 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.149 4.149 9 C -0.124 4.124 10 H 0.113 0.887 11 C 0.300 3.700 12 O -0.414 6.414 13 N -0.379 5.379 14 C -0.002 4.002 15 C -0.176 4.176 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.234 0.766 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.217 7.700 -15.160 27.190 hybrid contribution 1.166 -0.137 0.277 1.206 sum -20.051 7.564 -14.883 26.092 Atomic orbital electron populations 1.21757 0.96200 1.01225 1.01334 1.21840 0.95847 0.96207 1.03214 1.20937 0.92297 0.96978 0.98036 0.90598 1.21668 1.00906 0.95421 0.97357 1.21568 0.95674 0.96965 1.01748 1.21524 0.96100 1.00608 0.97274 1.21536 1.00849 0.93730 0.98812 1.21406 0.98126 0.96990 0.95908 0.88683 1.20643 0.82322 0.79189 0.87816 1.90636 1.49701 1.48777 1.52318 1.46142 1.07484 1.60376 1.23886 1.21344 0.95511 0.97764 0.85555 1.21939 0.93113 1.02084 1.00428 1.20517 0.86743 0.96828 0.93081 1.42342 0.99748 1.70841 1.24891 1.19249 0.89877 1.29858 0.98096 0.91097 1.24754 0.96194 1.01625 0.98525 1.69659 1.04595 1.50154 1.33966 0.86162 0.78882 0.78709 0.82291 1.21678 1.21742 1.20710 0.93132 0.93143 0.92834 0.92970 0.89049 0.91491 0.91992 0.91943 0.92039 0.91656 0.91746 0.91310 0.91319 0.76635 0.91447 0.91459 0.91353 0.91342 0.96083 0.96083 0.78309 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 37.16 0.36 -0.94 16 2 C -0.13 -1.33 5.14 -26.73 -0.14 -1.47 16 3 C -0.06 -0.57 1.35 -90.62 -0.12 -0.70 16 4 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 5 C -0.12 -0.82 4.96 -26.73 -0.13 -0.95 16 6 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 7 C -0.12 -0.75 5.92 -26.73 -0.16 -0.90 16 8 C -0.11 -0.84 5.10 -26.73 -0.14 -0.98 16 9 C -0.10 -0.91 2.06 -91.77 -0.19 -1.10 16 10 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 11 C 0.51 6.23 6.83 -10.99 -0.08 6.15 16 12 O -0.54 -8.37 13.67 5.55 0.08 -8.30 16 13 N -0.73 -8.31 5.45 -60.30 -0.33 -8.64 16 14 C 0.12 1.67 5.67 -4.04 -0.02 1.64 16 15 C -0.14 -2.11 5.44 -26.74 -0.15 -2.25 16 16 C 0.16 3.14 6.26 -4.05 -0.03 3.12 16 17 N -0.73 -18.80 5.60 -59.91 -0.34 -19.14 16 18 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 19 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 22 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 H 0.05 0.38 6.57 -51.93 -0.34 0.03 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.09 1.17 5.42 -51.93 -0.28 0.89 16 31 H 0.07 0.45 6.56 -51.93 -0.34 0.11 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.47 7.57 -51.93 -0.39 0.08 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.40 3.64 7.89 -40.82 -0.32 3.32 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -32.08 364.66 -9.30 -41.38 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.72 Total: 6.16 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.19 Total: -6.82 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.06 Total: -55.48 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.08 -9.30 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169720410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.240 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds