Wall clock time and date at job start Tue Mar 31 2020 05:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46754 * 2 1 4 4 H 1.09002 * 109.47070 * 55.00009 * 3 2 1 5 5 C 1.53000 * 109.47233 * 294.99635 * 3 2 1 6 6 C 1.53002 * 109.47233 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 3 8 8 C 1.53005 * 109.47452 * 300.00239 * 7 6 5 9 9 C 1.52997 * 109.46817 * 174.99829 * 3 2 1 10 10 H 1.08996 * 109.47853 * 300.00202 * 9 3 2 11 11 C 1.50706 * 109.47238 * 60.00354 * 9 3 2 12 12 O 1.21279 * 119.99507 * 359.97438 * 11 9 3 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 9 3 14 14 C 1.46506 * 120.00072 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47289 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.46947 * 179.97438 * 15 14 13 17 17 N 1.46503 * 109.47126 * 179.97438 * 16 15 14 18 18 C 1.36936 * 120.00056 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00023 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99713 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00433 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99961 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46792 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46829 * 120.00408 * 22 20 18 25 25 H 1.48495 * 109.47299 * 240.00792 * 22 20 18 26 26 H 1.09000 * 109.47306 * 299.99810 * 1 2 3 27 27 H 1.09000 * 109.46927 * 59.99869 * 1 2 3 28 28 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47306 * 240.00190 * 2 1 3 30 30 H 1.08996 * 109.47287 * 119.99816 * 2 1 3 31 31 H 1.08992 * 109.47399 * 300.00166 * 5 3 2 32 32 H 1.09004 * 109.46724 * 60.00652 * 5 3 2 33 33 H 1.09002 * 109.47075 * 300.00932 * 6 5 3 34 34 H 1.08993 * 109.47662 * 180.02562 * 6 5 3 35 35 H 1.09001 * 109.47289 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 37 37 H 1.09002 * 109.46935 * 300.00125 * 8 7 6 38 38 H 1.09000 * 109.47360 * 180.02562 * 8 7 6 39 39 H 0.97002 * 120.00016 * 0.02562 * 13 11 9 40 40 H 1.08998 * 109.46566 * 300.00356 * 14 13 11 41 41 H 1.08996 * 109.46660 * 59.99376 * 14 13 11 42 42 H 1.09001 * 109.46832 * 299.99854 * 15 14 13 43 43 H 1.08996 * 109.46952 * 59.99873 * 15 14 13 44 44 H 1.09001 * 109.47367 * 300.00248 * 16 15 14 45 45 H 1.09004 * 109.47108 * 59.99946 * 16 15 14 46 46 H 0.96998 * 119.99881 * 0.02562 * 17 16 15 47 47 H 0.97006 * 120.00473 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 2.1446 3.5693 -1.3071 7 6 3.6694 3.5717 -1.1810 8 6 4.0742 2.8876 0.1263 9 6 3.5647 1.4444 0.1258 10 1 3.8532 0.9571 1.0571 11 6 4.1657 0.6992 -1.0382 12 8 3.4453 0.2140 -1.8846 13 7 5.5037 0.5720 -1.1384 14 6 6.0879 -0.1529 -2.2696 15 6 7.6127 -0.1510 -2.1439 16 6 8.2227 -0.9086 -3.3249 17 7 9.6829 -0.9062 -3.2049 18 6 10.4489 -1.5291 -4.1538 19 1 9.9767 -2.0217 -4.9908 20 6 11.8323 -1.5263 -4.0403 21 7 12.4078 -0.9255 -3.0204 22 14 12.8773 -2.3754 -5.3351 23 1 11.9952 -2.9704 -6.3709 24 1 13.7839 -1.3838 -5.9676 25 1 13.6835 -3.4464 -4.6963 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0699 1.5876 -2.1491 32 1 0.5489 2.1253 -1.3969 33 1 1.7096 4.1080 -0.4652 34 1 1.8559 4.0568 -2.2382 35 1 4.0323 4.5995 -1.1804 36 1 4.1044 3.0330 -2.0228 37 1 3.6392 3.4264 0.9681 38 1 5.1605 2.8898 0.2163 39 1 6.0799 0.9598 -0.4612 40 1 5.7249 -1.1807 -2.2689 41 1 5.7991 0.3337 -3.2011 42 1 7.9760 0.8767 -2.1443 43 1 7.9011 -0.6379 -1.2123 44 1 7.8594 -1.9362 -3.3241 45 1 7.9343 -0.4220 -4.2567 46 1 10.1069 -0.4641 -2.4528 47 1 13.3746 -0.9239 -2.9409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169720411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:08 Heat of formation + Delta-G solvation = -64.370026 kcal Electronic energy + Delta-G solvation = -22645.377527 eV Core-core repulsion = 19440.752118 eV Total energy + Delta-G solvation = -3204.625409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.86420 -37.71220 -35.92806 -34.58497 -33.87264 -32.20099 -31.20274 -29.36238 -29.15801 -25.49882 -24.00856 -23.56248 -22.40461 -21.28263 -21.07592 -20.68291 -19.42068 -17.08992 -16.54005 -16.16664 -15.88975 -15.43112 -14.96988 -14.65587 -14.45658 -14.05822 -13.77181 -13.63496 -13.44793 -13.27171 -13.02766 -12.77311 -12.55789 -12.26085 -12.06953 -11.67542 -11.63847 -11.54952 -11.21742 -11.01407 -10.94895 -10.91101 -10.74642 -10.72605 -10.56205 -10.18950 -10.14973 -10.04238 -9.73901 -9.33578 -8.95993 -8.89139 -6.94261 -5.78173 -3.07059 2.64937 3.20453 3.43054 3.48858 3.51113 4.34140 4.46530 4.49150 4.58663 4.84208 4.91220 4.97950 5.06552 5.15606 5.17363 5.24157 5.30047 5.31077 5.35921 5.48917 5.51983 5.56951 5.62581 5.64519 5.70731 5.75702 5.86250 5.94832 5.98791 6.01945 6.04724 6.07155 6.08439 6.18925 6.23097 6.31501 6.35219 6.41105 6.64155 6.78484 6.82751 7.52764 7.69953 8.27140 8.40838 9.52043 10.09178 10.43831 11.44946 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033379 B = 0.002651 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.638073 B =10558.062135 C =10900.332137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C -0.061 4.061 4 H 0.069 0.931 5 C -0.130 4.130 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.110 4.110 9 C -0.106 4.106 10 H 0.094 0.906 11 C 0.519 3.481 12 O -0.533 6.533 13 N -0.728 5.728 14 C 0.123 3.877 15 C -0.137 4.137 16 C 0.157 3.843 17 N -0.734 5.734 18 C -0.239 4.239 19 H 0.072 0.928 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.399 0.601 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.748 8.654 9.735 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.080 4.080 4 H 0.088 0.912 5 C -0.167 4.167 6 C -0.156 4.156 7 C -0.161 4.161 8 C -0.148 4.148 9 C -0.128 4.128 10 H 0.112 0.888 11 C 0.306 3.694 12 O -0.411 6.411 13 N -0.379 5.379 14 C -0.001 4.001 15 C -0.176 4.176 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.090 0.910 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.233 0.767 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.214 8.195 8.952 26.195 hybrid contribution 1.200 -0.095 0.018 1.204 sum -22.014 8.101 8.970 25.114 Atomic orbital electron populations 1.21779 0.96303 1.01207 1.01356 1.21837 0.95592 0.96345 1.03363 1.20909 0.91952 0.96713 0.98389 0.91238 1.21896 1.00478 0.95159 0.99165 1.21537 0.95359 0.97375 1.01336 1.21570 0.96471 1.00518 0.97532 1.21543 1.00774 0.93646 0.98823 1.21454 0.97233 0.96561 0.97523 0.88813 1.20527 0.82019 0.79703 0.87189 1.90563 1.59700 1.48552 1.42267 1.46151 1.06934 1.57100 1.27756 1.21329 0.93291 0.96716 0.88753 1.21939 0.92750 1.01933 1.00944 1.20519 0.85901 0.96521 0.94220 1.42352 0.99389 1.66623 1.29469 1.19292 0.88489 1.26891 1.02330 0.91045 1.24755 0.96606 1.01341 0.98417 1.69668 1.09304 1.48512 1.30865 0.86096 0.80438 0.78769 0.80793 1.20499 1.21835 1.21829 0.93418 0.92573 0.93141 0.88938 0.92987 0.88869 0.92294 0.92455 0.92247 0.91828 0.91822 0.90881 0.91426 0.76706 0.91488 0.91500 0.91365 0.91372 0.96093 0.96099 0.78314 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.67 37.16 0.36 -0.91 16 2 C -0.13 -1.31 5.03 -26.73 -0.13 -1.45 16 3 C -0.06 -0.54 1.93 -90.62 -0.18 -0.72 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 5 C -0.13 -1.26 4.69 -26.73 -0.13 -1.39 16 6 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 7 C -0.12 -1.08 5.70 -26.73 -0.15 -1.23 16 8 C -0.11 -0.83 5.36 -26.70 -0.14 -0.97 16 9 C -0.11 -0.93 2.55 -91.74 -0.23 -1.17 16 10 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 11 C 0.52 6.06 5.36 -10.98 -0.06 6.00 16 12 O -0.53 -7.80 11.36 5.56 0.06 -7.74 16 13 N -0.73 -8.14 5.45 -60.29 -0.33 -8.46 16 14 C 0.12 1.65 5.67 -4.04 -0.02 1.63 16 15 C -0.14 -2.09 5.44 -26.73 -0.15 -2.24 16 16 C 0.16 3.13 6.26 -4.04 -0.03 3.11 16 17 N -0.73 -18.75 5.60 -59.91 -0.34 -19.09 16 18 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 22 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 1.15 5.64 -51.93 -0.29 0.86 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 1.16 5.51 -51.93 -0.29 0.88 16 32 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.68 7.22 -51.93 -0.37 0.31 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.47 7.57 -51.93 -0.39 0.07 16 39 H 0.40 3.61 7.90 -40.82 -0.32 3.29 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -31.58 358.33 -9.31 -40.90 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.55 Total: 7.12 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.26 Total: -7.98 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.06 Total: -55.22 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.06 Total: -7.74 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.58 -9.31 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169720411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.473 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds