Wall clock time and date at job start Tue Mar 31 2020 05:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47300 * 2 1 4 4 H 1.08995 * 109.47132 * 304.99969 * 3 2 1 5 5 C 1.53000 * 109.47200 * 64.99990 * 3 2 1 6 6 C 1.52995 * 109.47200 * 179.97438 * 5 3 2 7 7 C 1.53009 * 109.47225 * 299.99987 * 6 5 3 8 8 C 1.53000 * 109.47021 * 59.99903 * 7 6 5 9 9 C 1.53000 * 109.46922 * 300.00283 * 8 7 6 10 10 H 1.09002 * 109.47106 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47177 * 299.99687 * 9 8 7 12 12 O 1.21280 * 119.99901 * 120.00184 * 11 9 8 13 13 N 1.34774 * 120.00338 * 300.00305 * 11 9 8 14 14 C 1.46497 * 120.00288 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47302 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47355 * 180.02562 * 15 14 13 17 17 N 1.46490 * 109.47264 * 179.97438 * 16 15 14 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 H 1.08997 * 109.46882 * 59.99795 * 1 2 3 27 27 H 1.09000 * 109.47117 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47109 * 300.00085 * 1 2 3 29 29 H 1.09001 * 109.46567 * 239.99393 * 2 1 3 30 30 H 1.09007 * 109.47007 * 120.00233 * 2 1 3 31 31 H 1.08998 * 109.47223 * 299.99728 * 5 3 2 32 32 H 1.09005 * 109.47048 * 60.00037 * 5 3 2 33 33 H 1.08997 * 109.47386 * 59.99500 * 6 5 3 34 34 H 1.09002 * 109.47384 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.47054 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.46541 * 300.00031 * 7 6 5 37 37 H 1.08998 * 109.47223 * 180.02562 * 8 7 6 38 38 H 1.09005 * 109.47048 * 60.00075 * 8 7 6 39 39 H 0.97001 * 119.99493 * 0.02562 * 13 11 9 40 40 H 1.09000 * 109.47237 * 60.00287 * 14 13 11 41 41 H 1.09002 * 109.47081 * 299.99975 * 14 13 11 42 42 H 1.09000 * 109.46966 * 59.99845 * 15 14 13 43 43 H 1.09002 * 109.46807 * 299.99867 * 15 14 13 44 44 H 1.09003 * 109.46836 * 59.99354 * 16 15 14 45 45 H 1.08999 * 109.47071 * 300.00393 * 16 15 14 46 46 H 0.97000 * 120.00577 * 0.02562 * 17 16 15 47 47 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1459 3.5687 1.3076 7 6 3.6708 3.5700 1.1822 8 6 4.0756 2.8859 -0.1251 9 6 3.5649 1.4436 -0.1254 10 1 3.8528 0.9564 -1.0569 11 6 4.1653 0.6980 1.0385 12 8 3.4445 0.2134 1.8850 13 7 5.5031 0.5697 1.1388 14 6 6.0868 -0.1547 2.2705 15 6 7.6116 -0.1531 2.1454 16 6 8.2212 -0.9102 3.3270 17 7 9.6811 -0.9091 3.2068 18 6 10.4468 -1.5309 4.1567 19 1 9.9743 -2.0224 4.9943 20 6 11.8303 -1.5295 4.0432 21 7 12.4062 -0.9301 3.0227 22 14 12.8746 -2.3783 5.3387 23 1 14.3107 -2.2338 4.9895 24 1 12.6227 -1.7558 6.6633 25 1 12.5207 -3.8195 5.3936 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5490 2.1253 1.3969 32 1 2.0699 1.5874 2.1492 33 1 1.7118 4.1081 0.4658 34 1 1.8579 4.0560 2.2392 35 1 4.0345 4.5975 1.1819 36 1 4.1049 3.0307 2.0240 37 1 5.1619 2.8864 -0.2143 38 1 3.6413 3.4252 -0.9670 39 1 6.0796 0.9576 0.4620 40 1 5.7230 -1.1822 2.2708 41 1 5.7985 0.3331 3.2017 42 1 7.9751 0.8745 2.1453 43 1 7.9002 -0.6406 1.2141 44 1 7.8576 -1.9378 3.3266 45 1 7.9325 -0.4231 4.2584 46 1 10.1057 -0.4674 2.4548 47 1 11.8638 -0.4896 2.3498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169720412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:11 Heat of formation + Delta-G solvation = -63.986224 kcal Electronic energy + Delta-G solvation = -22683.828466 eV Core-core repulsion = 19479.219700 eV Total energy + Delta-G solvation = -3204.608766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90760 -37.75949 -36.05132 -34.74854 -33.96089 -32.33560 -31.22796 -29.22908 -29.15635 -25.31830 -24.01883 -23.51188 -22.52021 -21.36641 -21.18504 -20.71865 -19.46647 -17.29096 -16.62291 -16.20359 -15.93364 -15.49316 -15.02375 -14.65479 -14.52370 -14.04921 -13.81707 -13.78350 -13.60834 -13.47077 -13.11851 -12.82180 -12.62037 -12.30217 -12.10820 -11.69828 -11.60738 -11.51187 -11.25232 -11.18310 -10.95583 -10.91064 -10.71965 -10.59098 -10.56737 -10.22007 -10.17852 -9.98466 -9.41116 -9.17432 -9.01512 -8.89454 -7.02763 -6.12174 -3.11883 2.60485 3.15079 3.51780 3.55476 3.72800 4.30715 4.43061 4.45835 4.66135 4.80450 4.88090 4.94097 5.03745 5.07722 5.13783 5.20641 5.23126 5.27250 5.32362 5.46134 5.49026 5.54059 5.60351 5.60654 5.67556 5.72644 5.83816 5.90413 5.92079 5.98361 5.98887 6.00804 6.02076 6.05640 6.17893 6.20398 6.32406 6.36040 6.59853 6.69474 6.73391 7.47284 7.79913 8.22382 8.74423 9.21326 10.07647 10.22155 11.36613 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033392 B = 0.002660 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.328871 B =10522.529428 C =10864.039717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C -0.061 4.061 4 H 0.070 0.930 5 C -0.130 4.130 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.110 4.110 9 C -0.106 4.106 10 H 0.094 0.906 11 C 0.519 3.481 12 O -0.532 6.532 13 N -0.729 5.729 14 C 0.124 3.876 15 C -0.138 4.138 16 C 0.162 3.838 17 N -0.745 5.745 18 C -0.332 4.332 19 H 0.065 0.935 20 C -0.046 4.046 21 N -0.945 5.945 22 Si 1.081 2.919 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.295 1.295 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.399 0.601 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.022 0.978 45 H 0.022 0.978 46 H 0.366 0.634 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.002 8.497 -9.443 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.080 4.080 4 H 0.088 0.912 5 C -0.167 4.167 6 C -0.156 4.156 7 C -0.161 4.161 8 C -0.148 4.148 9 C -0.128 4.128 10 H 0.112 0.888 11 C 0.306 3.694 12 O -0.410 6.410 13 N -0.380 5.380 14 C 0.000 4.000 15 C -0.177 4.177 16 C 0.034 3.966 17 N -0.391 5.391 18 C -0.463 4.463 19 H 0.083 0.917 20 C -0.244 4.244 21 N -0.590 5.590 22 Si 0.912 3.088 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.222 1.222 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.233 0.767 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.200 0.800 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.053 7.658 -8.158 24.729 hybrid contribution -1.132 0.690 -1.102 1.724 sum -23.186 8.348 -9.259 26.325 Atomic orbital electron populations 1.21778 0.96268 1.01227 1.01372 1.21838 0.95630 0.96327 1.03351 1.20909 0.91904 0.96736 0.98418 0.91196 1.21896 1.00509 0.95162 0.99143 1.21539 0.95320 0.97384 1.01364 1.21573 0.96513 1.00520 0.97495 1.21535 1.00727 0.93662 0.98863 1.21446 0.97277 0.96553 0.97482 0.88804 1.20537 0.81977 0.79691 0.87213 1.90566 1.59656 1.48521 1.42249 1.46143 1.06978 1.57153 1.27722 1.21307 0.93092 0.96806 0.88816 1.21956 0.93051 1.01797 1.00862 1.20452 0.85309 0.96617 0.94228 1.42349 1.00164 1.67420 1.29157 1.20050 0.91224 1.31186 1.03858 0.91689 1.25820 0.94205 1.01605 1.02735 1.70892 1.37239 1.38151 1.12751 0.83227 0.76200 0.75242 0.74159 1.20988 1.22212 1.22205 0.93399 0.93124 0.92564 0.92987 0.88959 0.92246 0.88895 0.92419 0.92224 0.91810 0.91863 0.91479 0.90832 0.76736 0.91424 0.91459 0.91465 0.91468 0.95987 0.95994 0.80049 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 37.16 0.36 -0.90 16 2 C -0.13 -1.31 5.03 -26.73 -0.13 -1.45 16 3 C -0.06 -0.54 1.93 -90.62 -0.18 -0.72 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 5 C -0.13 -1.26 4.69 -26.73 -0.13 -1.38 16 6 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 7 C -0.12 -1.07 5.70 -26.73 -0.15 -1.23 16 8 C -0.11 -0.83 5.36 -26.73 -0.14 -0.97 16 9 C -0.11 -0.93 2.54 -91.77 -0.23 -1.16 16 10 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 11 C 0.52 6.05 5.36 -10.99 -0.06 5.99 16 12 O -0.53 -7.79 11.36 5.56 0.06 -7.73 16 13 N -0.73 -8.13 5.45 -60.30 -0.33 -8.46 16 14 C 0.12 1.67 5.67 -4.04 -0.02 1.64 16 15 C -0.14 -2.11 5.44 -26.73 -0.15 -2.26 16 16 C 0.16 3.29 6.26 -4.05 -0.03 3.27 16 17 N -0.75 -19.14 5.60 -59.91 -0.34 -19.47 16 18 C -0.33 -9.60 9.99 -15.06 -0.15 -9.75 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.05 -1.37 5.50 -17.43 -0.10 -1.46 16 21 N -0.94 -29.49 13.70 55.49 0.76 -28.72 16 22 Si 1.08 26.17 29.92 -169.99 -5.09 21.09 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.15 5.64 -51.93 -0.29 0.85 16 31 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 32 H 0.09 1.16 5.51 -51.93 -0.29 0.87 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.68 7.22 -51.93 -0.37 0.30 16 37 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.40 3.59 7.89 -40.82 -0.32 3.27 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.37 9.47 6.50 -40.82 -0.27 9.20 16 47 H 0.25 7.76 6.77 -40.82 -0.28 7.49 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -32.83 356.60 -9.26 -42.09 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -8.44 Total: 7.38 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.26 Total: -11.54 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.10 Total: -56.66 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.06 Total: -7.73 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.83 -9.26 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169720412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.896 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds