Wall clock time and date at job start Tue Mar 31 2020 05:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47300 * 2 1 4 4 H 1.08995 * 109.47132 * 304.99969 * 3 2 1 5 5 C 1.53000 * 109.47200 * 64.99990 * 3 2 1 6 6 C 1.52995 * 109.47200 * 179.97438 * 5 3 2 7 7 C 1.53009 * 109.47225 * 299.99987 * 6 5 3 8 8 C 1.53000 * 109.47021 * 59.99903 * 7 6 5 9 9 C 1.53000 * 109.46922 * 300.00283 * 8 7 6 10 10 H 1.09002 * 109.47106 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47177 * 299.99687 * 9 8 7 12 12 O 1.21280 * 119.99901 * 120.00184 * 11 9 8 13 13 N 1.34774 * 120.00338 * 300.00305 * 11 9 8 14 14 C 1.46497 * 120.00288 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47302 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47355 * 180.02562 * 15 14 13 17 17 N 1.46490 * 109.47264 * 179.97438 * 16 15 14 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 H 1.08997 * 109.46882 * 59.99795 * 1 2 3 27 27 H 1.09000 * 109.47117 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47109 * 300.00085 * 1 2 3 29 29 H 1.09001 * 109.46567 * 239.99393 * 2 1 3 30 30 H 1.09007 * 109.47007 * 120.00233 * 2 1 3 31 31 H 1.08998 * 109.47223 * 299.99728 * 5 3 2 32 32 H 1.09005 * 109.47048 * 60.00037 * 5 3 2 33 33 H 1.08997 * 109.47386 * 59.99500 * 6 5 3 34 34 H 1.09002 * 109.47384 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.47054 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.46541 * 300.00031 * 7 6 5 37 37 H 1.08998 * 109.47223 * 180.02562 * 8 7 6 38 38 H 1.09005 * 109.47048 * 60.00075 * 8 7 6 39 39 H 0.97001 * 119.99493 * 0.02562 * 13 11 9 40 40 H 1.09000 * 109.47237 * 60.00287 * 14 13 11 41 41 H 1.09002 * 109.47081 * 299.99975 * 14 13 11 42 42 H 1.09000 * 109.46966 * 59.99845 * 15 14 13 43 43 H 1.09002 * 109.46807 * 299.99867 * 15 14 13 44 44 H 1.09003 * 109.46836 * 59.99354 * 16 15 14 45 45 H 1.08999 * 109.47071 * 300.00393 * 16 15 14 46 46 H 0.97000 * 120.00577 * 0.02562 * 17 16 15 47 47 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1459 3.5687 1.3076 7 6 3.6708 3.5700 1.1822 8 6 4.0756 2.8859 -0.1251 9 6 3.5649 1.4436 -0.1254 10 1 3.8528 0.9564 -1.0569 11 6 4.1653 0.6980 1.0385 12 8 3.4445 0.2134 1.8850 13 7 5.5031 0.5697 1.1388 14 6 6.0868 -0.1547 2.2705 15 6 7.6116 -0.1531 2.1454 16 6 8.2212 -0.9102 3.3270 17 7 9.6811 -0.9091 3.2068 18 6 10.4468 -1.5309 4.1567 19 1 9.9743 -2.0224 4.9943 20 6 11.8303 -1.5295 4.0432 21 7 12.4062 -0.9301 3.0227 22 14 12.8746 -2.3783 5.3387 23 1 14.3107 -2.2338 4.9895 24 1 12.6227 -1.7558 6.6633 25 1 12.5207 -3.8195 5.3936 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5490 2.1253 1.3969 32 1 2.0699 1.5874 2.1492 33 1 1.7118 4.1081 0.4658 34 1 1.8579 4.0560 2.2392 35 1 4.0345 4.5975 1.1819 36 1 4.1049 3.0307 2.0240 37 1 5.1619 2.8864 -0.2143 38 1 3.6413 3.4252 -0.9670 39 1 6.0796 0.9576 0.4620 40 1 5.7230 -1.1822 2.2708 41 1 5.7985 0.3331 3.2017 42 1 7.9751 0.8745 2.1453 43 1 7.9002 -0.6406 1.2141 44 1 7.8576 -1.9378 3.3266 45 1 7.9325 -0.4231 4.2584 46 1 10.1057 -0.4674 2.4548 47 1 11.8638 -0.4896 2.3498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169720412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:11 Heat of formation + Delta-G solvation = -84.615230 kcal Electronic energy + Delta-G solvation = -22684.723006 eV Core-core repulsion = 19479.219700 eV Total energy + Delta-G solvation = -3205.503307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.74672 -38.67061 -37.55074 -36.14569 -34.82461 -33.85066 -32.27739 -30.75921 -29.87791 -26.87614 -25.08700 -24.65661 -23.83614 -22.71597 -22.01858 -21.46764 -20.39544 -19.39676 -17.53781 -17.12854 -17.01769 -16.61863 -16.32966 -15.93699 -15.77745 -15.43843 -15.09267 -14.76582 -14.69911 -14.39846 -14.18791 -13.88023 -13.50574 -13.05082 -12.96131 -12.91160 -12.81158 -12.67133 -12.42789 -12.40225 -12.28252 -12.11860 -11.90605 -11.88410 -11.73033 -11.45496 -11.31333 -10.96642 -10.90347 -10.85650 -10.30070 -10.02612 -9.16788 -8.44571 -5.38914 1.57837 1.67764 1.70608 1.84560 2.20309 2.69759 3.35699 3.59405 3.61907 3.72627 3.77632 3.97734 4.08184 4.15572 4.18601 4.23649 4.33733 4.36134 4.47252 4.54355 4.59622 4.60868 4.62567 4.66947 4.77467 4.78743 4.84183 4.95944 5.03739 5.07613 5.16535 5.16959 5.18737 5.26060 5.29364 5.32494 5.33364 5.44827 5.49673 5.54294 5.55434 5.78063 6.46493 6.59388 7.05256 7.33236 7.95249 8.05307 9.07920 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033392 B = 0.002660 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.328871 B =10522.529428 C =10864.039717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.059 4.059 4 H 0.092 0.908 5 C -0.128 4.128 6 C -0.116 4.116 7 C -0.125 4.125 8 C -0.106 4.106 9 C -0.101 4.101 10 H 0.115 0.885 11 C 0.514 3.486 12 O -0.565 6.565 13 N -0.722 5.722 14 C 0.137 3.863 15 C -0.118 4.118 16 C 0.158 3.842 17 N -0.758 5.758 18 C -0.342 4.342 19 H 0.065 0.935 20 C -0.103 4.103 21 N -0.973 5.973 22 Si 1.129 2.871 23 H -0.290 1.290 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.412 0.588 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.363 0.637 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.760 9.280 -10.730 27.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.078 4.078 4 H 0.111 0.889 5 C -0.165 4.165 6 C -0.154 4.154 7 C -0.162 4.162 8 C -0.144 4.144 9 C -0.122 4.122 10 H 0.133 0.867 11 C 0.303 3.697 12 O -0.445 6.445 13 N -0.374 5.374 14 C 0.012 3.988 15 C -0.156 4.156 16 C 0.031 3.969 17 N -0.403 5.403 18 C -0.473 4.473 19 H 0.083 0.917 20 C -0.294 4.294 21 N -0.621 5.621 22 Si 0.953 3.047 23 H -0.216 1.216 24 H -0.203 1.203 25 H -0.203 1.203 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.248 0.752 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.195 0.805 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.855 8.454 -9.461 26.141 hybrid contribution -0.993 0.441 -0.673 1.278 sum -23.849 8.895 -10.134 27.396 Atomic orbital electron populations 1.21754 0.95370 1.01389 1.01878 1.21786 0.96485 0.96817 1.02037 1.20936 0.92124 0.96151 0.98556 0.88938 1.21820 1.00489 0.95714 0.98518 1.21531 0.95318 0.96578 1.01954 1.21578 0.96467 1.00901 0.97283 1.21568 1.01485 0.92562 0.98790 1.21509 0.96929 0.97173 0.96625 0.86703 1.21183 0.81641 0.79245 0.87673 1.90579 1.60380 1.49838 1.43697 1.46018 1.07256 1.56875 1.27285 1.20973 0.91794 0.96575 0.89469 1.21701 0.93745 1.01318 0.98811 1.20602 0.82839 0.97149 0.96320 1.42551 1.02143 1.67135 1.28513 1.20410 0.91928 1.30688 1.04274 0.91719 1.27290 0.95973 1.02093 1.04033 1.70996 1.37445 1.39874 1.13749 0.82622 0.74238 0.75309 0.72538 1.21568 1.20340 1.20320 0.91795 0.93221 0.93061 0.92380 0.92108 0.91965 0.92202 0.90500 0.92737 0.90747 0.94656 0.90546 0.88499 0.75206 0.92334 0.92507 0.90825 0.90780 0.96282 0.96332 0.80462 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.67 71.98 0.70 -1.62 16 2 C -0.13 -2.50 5.03 30.59 0.15 -2.34 16 3 C -0.06 -0.94 1.93 -10.80 -0.02 -0.96 16 4 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 5 C -0.13 -2.40 4.69 30.59 0.14 -2.25 16 6 C -0.12 -1.80 5.92 30.60 0.18 -1.62 16 7 C -0.12 -1.97 5.70 30.60 0.17 -1.79 16 8 C -0.11 -1.28 5.36 30.59 0.16 -1.12 16 9 C -0.10 -1.55 2.54 -11.54 -0.03 -1.58 16 10 H 0.12 1.32 8.14 -2.39 -0.02 1.31 16 11 C 0.51 11.68 5.36 87.66 0.47 12.15 16 12 O -0.57 -17.02 11.36 -3.03 -0.03 -17.05 16 13 N -0.72 -15.41 5.45 -463.07 -2.52 -17.93 16 14 C 0.14 3.65 5.67 86.38 0.49 4.14 16 15 C -0.12 -3.51 5.44 30.59 0.17 -3.34 16 16 C 0.16 6.42 6.26 86.38 0.54 6.96 16 17 N -0.76 -39.13 5.60 -343.47 -1.92 -41.05 16 18 C -0.34 -19.77 9.99 84.03 0.84 -18.93 16 19 H 0.06 3.67 7.83 -2.91 -0.02 3.64 16 20 C -0.10 -6.04 5.50 84.86 0.47 -5.57 16 21 N -0.97 -61.12 13.70 21.65 0.30 -60.82 16 22 Si 1.13 52.28 29.92 68.60 2.05 54.33 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.85 6.57 -2.39 -0.02 0.83 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.55 5.64 -2.38 -0.01 1.54 16 31 H 0.06 1.09 6.57 -2.39 -0.02 1.07 16 32 H 0.06 1.55 5.51 -2.38 -0.01 1.54 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.03 0.75 7.22 -2.39 -0.02 0.73 16 37 H 0.08 0.80 7.56 -2.39 -0.02 0.78 16 38 H 0.10 0.79 8.14 -2.38 -0.02 0.78 16 39 H 0.41 6.62 7.89 -92.71 -0.73 5.88 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.36 18.95 6.50 -92.71 -0.60 18.34 16 47 H 0.25 15.23 6.77 -92.71 -0.63 14.61 16 Total: -1.00 -71.38 356.60 2.06 -69.32 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: -0.25 Total: 31.09 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 4.44 Total: -17.88 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -4.15 Total: -119.81 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.03 Total: -17.05 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 2.05 Total: 54.33 kcal Total: -71.38 2.06 -69.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169720412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.295 kcal (2) G-P(sol) polarization free energy of solvation -71.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds