Wall clock time and date at job start Tue Mar 31 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47260 * 2 1 4 4 H 1.09002 * 109.47497 * 305.00027 * 3 2 1 5 5 C 1.53006 * 109.47445 * 64.99802 * 3 2 1 6 6 C 1.52997 * 109.47445 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47092 * 300.00075 * 6 5 3 8 8 C 1.53001 * 109.46963 * 60.00194 * 7 6 5 9 9 C 1.53000 * 109.46886 * 299.99499 * 8 7 6 10 10 H 1.09002 * 109.47398 * 300.00496 * 9 8 7 11 11 C 1.50703 * 109.46912 * 180.02562 * 9 8 7 12 12 O 1.21278 * 119.99818 * 240.00149 * 11 9 8 13 13 N 1.34777 * 119.99991 * 60.00288 * 11 9 8 14 14 C 1.46499 * 119.99824 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47125 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47143 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.47188 * 179.97438 * 16 15 14 18 18 C 1.36940 * 120.00466 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99624 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00209 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00199 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00178 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47285 * 89.99790 * 22 20 18 24 24 H 1.48507 * 109.47352 * 209.99338 * 22 20 18 25 25 H 1.48500 * 109.47311 * 329.99916 * 22 20 18 26 26 H 1.09001 * 109.46578 * 60.00310 * 1 2 3 27 27 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46842 * 300.00328 * 1 2 3 29 29 H 1.09001 * 109.47254 * 239.99866 * 2 1 3 30 30 H 1.09000 * 109.47102 * 119.99700 * 2 1 3 31 31 H 1.09001 * 109.46726 * 300.00265 * 5 3 2 32 32 H 1.09002 * 109.46589 * 59.99669 * 5 3 2 33 33 H 1.09002 * 109.47045 * 59.99942 * 6 5 3 34 34 H 1.09000 * 109.47140 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.46497 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47067 * 299.99853 * 7 6 5 37 37 H 1.09001 * 109.46652 * 179.97438 * 8 7 6 38 38 H 1.08992 * 109.47514 * 59.99933 * 8 7 6 39 39 H 0.96998 * 120.00094 * 359.97438 * 13 11 9 40 40 H 1.09004 * 109.47041 * 299.99672 * 14 13 11 41 41 H 1.09002 * 109.47391 * 59.99855 * 14 13 11 42 42 H 1.09004 * 109.46930 * 299.99785 * 15 14 13 43 43 H 1.09002 * 109.47067 * 59.99702 * 15 14 13 44 44 H 1.08993 * 109.47194 * 300.00323 * 16 15 14 45 45 H 1.09002 * 109.47153 * 60.00035 * 16 15 14 46 46 H 0.97003 * 119.99956 * 0.02562 * 17 16 15 47 47 H 0.97001 * 120.00222 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 2.1447 3.5693 1.3071 7 6 3.6696 3.5716 1.1811 8 6 4.0743 2.8876 -0.1263 9 6 3.5649 1.4449 -0.1259 10 1 3.9998 0.9061 0.7159 11 6 3.9640 0.7709 -1.4134 12 8 3.1127 0.3320 -2.1573 13 7 5.2671 0.6560 -1.7381 14 6 5.6551 0.0014 -2.9899 15 6 7.1799 0.0042 -3.1156 16 6 7.5851 -0.6801 -4.4226 17 7 9.0451 -0.6769 -4.5433 18 6 9.6429 -1.2393 -5.6395 19 1 9.0379 -1.6849 -6.4153 20 6 11.0262 -1.2367 -5.7535 21 7 11.6008 -1.7769 -6.8074 22 14 12.0726 -0.4667 -4.4113 23 1 12.4068 -1.4947 -3.3931 24 1 13.3248 0.0674 -5.0049 25 1 11.3183 0.6395 -3.7689 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5489 2.1253 1.3969 32 1 2.0698 1.5875 2.1491 33 1 1.7098 4.1080 0.4652 34 1 1.8560 4.0568 2.2382 35 1 4.0325 4.5994 1.1814 36 1 4.1045 3.0329 2.0229 37 1 5.1606 2.8897 -0.2162 38 1 3.6394 3.4263 -0.9680 39 1 5.9479 1.0074 -1.1432 40 1 5.2920 -1.0264 -2.9901 41 1 5.2205 0.5404 -3.8317 42 1 7.5426 1.0321 -3.1156 43 1 7.6149 -0.5346 -2.2738 44 1 7.2225 -1.7079 -4.4223 45 1 7.1502 -0.1417 -5.2647 46 1 9.5885 -0.2770 -3.8463 47 1 12.5675 -1.7754 -6.8869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169720413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:15 Heat of formation + Delta-G solvation = -65.162369 kcal Electronic energy + Delta-G solvation = -22330.308102 eV Core-core repulsion = 19125.648334 eV Total energy + Delta-G solvation = -3204.659767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.63857 -38.17715 -36.16739 -34.68799 -33.93232 -32.24330 -31.39671 -29.84363 -29.27929 -25.71748 -24.07798 -23.66168 -22.13628 -21.32682 -20.91999 -20.52752 -19.87414 -17.67465 -17.11507 -16.15320 -15.76173 -15.24552 -15.09559 -14.71015 -14.56402 -14.33080 -14.23759 -13.68729 -13.51617 -13.39690 -12.87615 -12.80471 -12.76344 -12.43904 -12.01970 -11.86512 -11.80637 -11.48430 -11.36382 -11.20318 -11.07018 -11.02583 -10.88196 -10.75310 -10.70650 -10.59800 -10.29320 -10.17437 -9.61745 -9.49582 -9.05860 -8.91649 -7.25828 -5.78069 -3.14301 2.56215 3.10935 3.35093 3.37416 3.43335 4.24995 4.31879 4.37103 4.57265 4.74041 4.80076 4.87824 4.96688 5.01635 5.04797 5.05879 5.15846 5.18914 5.21955 5.39774 5.44237 5.49110 5.49921 5.52523 5.68314 5.69030 5.75310 5.75702 5.79433 5.84889 5.91079 5.92464 5.95815 5.97847 6.03595 6.13084 6.24732 6.30327 6.48018 6.67397 6.70569 7.43172 7.98050 8.17250 8.40754 9.19402 9.91472 10.10952 11.40311 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029325 B = 0.002724 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.586501 B =10277.372463 C =11003.875129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.064 4.064 4 H 0.076 0.924 5 C -0.116 4.116 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.111 4.111 9 C -0.103 4.103 10 H 0.095 0.905 11 C 0.514 3.486 12 O -0.535 6.535 13 N -0.729 5.729 14 C 0.122 3.878 15 C -0.142 4.142 16 C 0.160 3.840 17 N -0.757 5.757 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.887 3.113 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.499 10.624 20.610 30.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.083 4.083 4 H 0.094 0.906 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.149 4.149 9 C -0.124 4.124 10 H 0.113 0.887 11 C 0.300 3.700 12 O -0.412 6.412 13 N -0.380 5.380 14 C -0.002 4.002 15 C -0.180 4.180 16 C 0.033 3.967 17 N -0.403 5.403 18 C -0.375 4.375 19 H 0.109 0.891 20 C -0.193 4.193 21 N -0.582 5.582 22 Si 0.717 3.283 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.080 10.175 19.821 30.672 hybrid contribution 1.346 0.665 1.151 1.892 sum -19.734 10.840 20.972 30.769 Atomic orbital electron populations 1.21757 0.96159 1.01264 1.01353 1.21836 0.95894 0.96164 1.03201 1.20941 0.92238 0.97017 0.98069 0.90569 1.21669 1.00951 0.95400 0.97337 1.21570 0.95629 0.96985 1.01783 1.21525 0.96154 1.00590 0.97238 1.21534 1.00764 0.93758 0.98857 1.21408 0.98185 0.96956 0.95873 0.88698 1.20647 0.82283 0.79191 0.87832 1.90642 1.49708 1.48634 1.52220 1.46133 1.07512 1.60504 1.23877 1.21328 0.95167 0.98004 0.85678 1.21992 0.93632 1.01972 1.00380 1.20495 0.85447 0.97524 0.93264 1.42691 1.01104 1.71809 1.24667 1.19073 0.90671 1.29998 0.97790 0.89148 1.24693 0.96329 1.00756 0.97498 1.69706 1.09594 1.49988 1.28897 0.86511 0.80401 0.79237 0.82131 1.21070 1.21694 1.20396 0.92817 0.93109 0.93118 0.89057 0.92972 0.91449 0.91996 0.91919 0.92016 0.91663 0.91764 0.91400 0.91288 0.76715 0.91248 0.91266 0.91401 0.91397 0.95187 0.95244 0.80702 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 37.16 0.36 -0.90 16 2 C -0.13 -1.28 5.14 -26.73 -0.14 -1.42 16 3 C -0.06 -0.55 1.36 -90.62 -0.12 -0.67 16 4 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 5 C -0.12 -0.78 4.96 -26.73 -0.13 -0.91 16 6 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 7 C -0.12 -0.70 5.92 -26.73 -0.16 -0.85 16 8 C -0.11 -0.79 5.10 -26.73 -0.14 -0.92 16 9 C -0.10 -0.86 2.06 -91.77 -0.19 -1.05 16 10 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 11 C 0.51 5.94 6.83 -10.98 -0.08 5.86 16 12 O -0.53 -8.08 13.67 5.56 0.08 -8.00 16 13 N -0.73 -7.76 5.45 -60.29 -0.33 -8.09 16 14 C 0.12 1.56 5.67 -4.04 -0.02 1.54 16 15 C -0.14 -1.99 5.44 -26.73 -0.15 -2.14 16 16 C 0.16 3.05 6.26 -4.04 -0.03 3.02 16 17 N -0.76 -18.05 5.41 -59.92 -0.32 -18.37 16 18 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 19 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 20 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 21 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 22 Si 0.89 22.02 27.74 -169.99 -4.71 17.31 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.36 6.56 -51.93 -0.34 0.02 16 29 H 0.09 1.13 5.42 -51.93 -0.28 0.85 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.43 6.56 -51.93 -0.34 0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.42 7.56 -51.93 -0.39 0.03 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.40 3.28 7.89 -40.82 -0.32 2.96 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.36 8.26 5.53 -40.82 -0.23 8.03 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -32.92 361.55 -8.95 -41.86 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.68 Total: 5.17 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -1.20 Total: -6.55 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.12 Total: -55.23 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.08 Total: -8.00 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.92 -8.95 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169720413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.299 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds