Wall clock time and date at job start Tue Mar 31 2020 05:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47260 * 2 1 4 4 H 1.09002 * 109.47497 * 305.00027 * 3 2 1 5 5 C 1.53006 * 109.47445 * 64.99802 * 3 2 1 6 6 C 1.52997 * 109.47445 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47092 * 300.00075 * 6 5 3 8 8 C 1.53001 * 109.46963 * 60.00194 * 7 6 5 9 9 C 1.53000 * 109.46886 * 299.99499 * 8 7 6 10 10 H 1.09002 * 109.47398 * 300.00496 * 9 8 7 11 11 C 1.50703 * 109.46912 * 180.02562 * 9 8 7 12 12 O 1.21278 * 119.99818 * 240.00149 * 11 9 8 13 13 N 1.34777 * 119.99991 * 60.00288 * 11 9 8 14 14 C 1.46499 * 119.99824 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47125 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47143 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.47188 * 179.97438 * 16 15 14 18 18 C 1.36940 * 120.00466 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99624 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00209 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00199 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00178 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47285 * 89.99790 * 22 20 18 24 24 H 1.48507 * 109.47352 * 209.99338 * 22 20 18 25 25 H 1.48500 * 109.47311 * 329.99916 * 22 20 18 26 26 H 1.09001 * 109.46578 * 60.00310 * 1 2 3 27 27 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46842 * 300.00328 * 1 2 3 29 29 H 1.09001 * 109.47254 * 239.99866 * 2 1 3 30 30 H 1.09000 * 109.47102 * 119.99700 * 2 1 3 31 31 H 1.09001 * 109.46726 * 300.00265 * 5 3 2 32 32 H 1.09002 * 109.46589 * 59.99669 * 5 3 2 33 33 H 1.09002 * 109.47045 * 59.99942 * 6 5 3 34 34 H 1.09000 * 109.47140 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.46497 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47067 * 299.99853 * 7 6 5 37 37 H 1.09001 * 109.46652 * 179.97438 * 8 7 6 38 38 H 1.08992 * 109.47514 * 59.99933 * 8 7 6 39 39 H 0.96998 * 120.00094 * 359.97438 * 13 11 9 40 40 H 1.09004 * 109.47041 * 299.99672 * 14 13 11 41 41 H 1.09002 * 109.47391 * 59.99855 * 14 13 11 42 42 H 1.09004 * 109.46930 * 299.99785 * 15 14 13 43 43 H 1.09002 * 109.47067 * 59.99702 * 15 14 13 44 44 H 1.08993 * 109.47194 * 300.00323 * 16 15 14 45 45 H 1.09002 * 109.47153 * 60.00035 * 16 15 14 46 46 H 0.97003 * 119.99956 * 0.02562 * 17 16 15 47 47 H 0.97001 * 120.00222 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 2.1447 3.5693 1.3071 7 6 3.6696 3.5716 1.1811 8 6 4.0743 2.8876 -0.1263 9 6 3.5649 1.4449 -0.1259 10 1 3.9998 0.9061 0.7159 11 6 3.9640 0.7709 -1.4134 12 8 3.1127 0.3320 -2.1573 13 7 5.2671 0.6560 -1.7381 14 6 5.6551 0.0014 -2.9899 15 6 7.1799 0.0042 -3.1156 16 6 7.5851 -0.6801 -4.4226 17 7 9.0451 -0.6769 -4.5433 18 6 9.6429 -1.2393 -5.6395 19 1 9.0379 -1.6849 -6.4153 20 6 11.0262 -1.2367 -5.7535 21 7 11.6008 -1.7769 -6.8074 22 14 12.0726 -0.4667 -4.4113 23 1 12.4068 -1.4947 -3.3931 24 1 13.3248 0.0674 -5.0049 25 1 11.3183 0.6395 -3.7689 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5489 2.1253 1.3969 32 1 2.0698 1.5875 2.1491 33 1 1.7098 4.1080 0.4652 34 1 1.8560 4.0568 2.2382 35 1 4.0325 4.5994 1.1814 36 1 4.1045 3.0329 2.0229 37 1 5.1606 2.8897 -0.2162 38 1 3.6394 3.4263 -0.9680 39 1 5.9479 1.0074 -1.1432 40 1 5.2920 -1.0264 -2.9901 41 1 5.2205 0.5404 -3.8317 42 1 7.5426 1.0321 -3.1156 43 1 7.6149 -0.5346 -2.2738 44 1 7.2225 -1.7079 -4.4223 45 1 7.1502 -0.1417 -5.2647 46 1 9.5885 -0.2770 -3.8463 47 1 12.5675 -1.7754 -6.8869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169720413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:14 Heat of formation + Delta-G solvation = -86.501267 kcal Electronic energy + Delta-G solvation = -22331.233426 eV Core-core repulsion = 19125.648334 eV Total energy + Delta-G solvation = -3205.585092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45363 -38.94553 -37.57932 -36.03882 -34.73930 -33.87098 -32.49517 -31.21241 -29.89986 -27.19534 -24.90931 -24.54920 -23.60856 -22.70505 -21.53878 -21.37778 -20.61218 -19.65045 -18.06357 -17.19669 -16.82107 -16.53773 -15.95857 -15.79558 -15.71972 -15.43631 -15.05946 -14.84309 -14.80967 -14.33903 -14.13500 -13.80295 -13.71835 -13.45775 -13.39334 -12.88307 -12.55802 -12.51882 -12.50047 -12.37324 -12.14214 -12.06531 -12.00887 -11.92062 -11.81551 -11.61074 -11.45632 -11.29219 -10.99082 -10.86257 -10.36906 -10.03582 -9.33325 -8.04225 -5.39594 1.37826 1.43366 1.50763 1.66719 2.20327 2.48479 3.26801 3.54133 3.61114 3.69364 3.77688 4.06451 4.12000 4.19204 4.23319 4.28001 4.37501 4.38260 4.46652 4.49215 4.53661 4.62409 4.70067 4.70538 4.78730 4.84859 4.88288 4.97440 5.04148 5.15088 5.20834 5.23043 5.24194 5.27200 5.28933 5.35737 5.37276 5.44115 5.47233 5.61781 5.66144 5.73299 6.19299 6.59146 7.06018 7.30397 7.80293 8.01545 9.17304 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029325 B = 0.002724 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.586501 B =10277.372463 C =11003.875129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C -0.062 4.062 4 H 0.053 0.947 5 C -0.111 4.111 6 C -0.122 4.122 7 C -0.114 4.114 8 C -0.109 4.109 9 C -0.095 4.095 10 H 0.115 0.885 11 C 0.510 3.490 12 O -0.576 6.576 13 N -0.718 5.718 14 C 0.131 3.869 15 C -0.121 4.121 16 C 0.154 3.846 17 N -0.758 5.758 18 C -0.243 4.243 19 H 0.052 0.948 20 C -0.068 4.068 21 N -0.985 5.985 22 Si 0.964 3.036 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.245 1.245 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.414 0.586 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.024 0.976 45 H 0.023 0.977 46 H 0.369 0.631 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.300 12.431 24.284 34.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.081 4.081 4 H 0.072 0.928 5 C -0.148 4.148 6 C -0.160 4.160 7 C -0.152 4.152 8 C -0.147 4.147 9 C -0.116 4.116 10 H 0.133 0.867 11 C 0.298 3.702 12 O -0.456 6.456 13 N -0.371 5.371 14 C 0.007 3.993 15 C -0.160 4.160 16 C 0.027 3.973 17 N -0.404 5.404 18 C -0.374 4.374 19 H 0.070 0.930 20 C -0.259 4.259 21 N -0.636 5.636 22 Si 0.790 3.210 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.170 1.170 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.251 0.749 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.042 0.958 45 H 0.041 0.959 46 H 0.203 0.797 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.913 12.011 23.543 33.703 hybrid contribution 1.175 0.036 -0.094 1.179 sum -19.738 12.047 23.449 32.932 Atomic orbital electron populations 1.21742 0.95536 1.01419 1.01649 1.21785 0.96543 0.96674 1.02069 1.20902 0.92419 0.96244 0.98504 0.92820 1.21630 1.01243 0.95736 0.96183 1.21579 0.95885 0.96407 1.02115 1.21521 0.95899 1.01051 0.96690 1.21544 1.01418 0.92499 0.99218 1.21429 0.98040 0.97771 0.94405 0.86729 1.21284 0.81913 0.78536 0.88502 1.90640 1.50848 1.50327 1.53752 1.45980 1.07847 1.59999 1.23239 1.21049 0.94246 0.97557 0.86498 1.21757 0.94181 1.02226 0.97791 1.20653 0.82834 0.97792 0.95993 1.42651 1.03039 1.71360 1.23382 1.19042 0.90773 1.29314 0.98254 0.93005 1.25645 0.97871 1.01921 1.00503 1.69909 1.09877 1.52096 1.31674 0.85284 0.77912 0.79134 0.78672 1.20153 1.22256 1.16952 0.93900 0.93059 0.91394 0.92187 0.91937 0.91212 0.90937 0.92750 0.90737 0.90876 0.90593 0.90091 0.92724 0.74885 0.92307 0.92417 0.90016 0.89901 0.95794 0.95914 0.79726 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.67 71.98 0.70 -1.72 16 2 C -0.13 -2.49 5.14 30.59 0.16 -2.34 16 3 C -0.06 -1.00 1.36 -10.79 -0.01 -1.02 16 4 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 5 C -0.11 -1.23 4.96 30.60 0.15 -1.08 16 6 C -0.12 -1.18 5.92 30.59 0.18 -1.00 16 7 C -0.11 -0.99 5.92 30.60 0.18 -0.81 16 8 C -0.11 -1.27 5.10 30.59 0.16 -1.12 16 9 C -0.10 -1.42 2.06 -11.54 -0.02 -1.44 16 10 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 11 C 0.51 11.31 6.83 87.66 0.60 11.90 16 12 O -0.58 -17.76 13.67 -3.02 -0.04 -17.80 16 13 N -0.72 -13.91 5.45 -463.05 -2.52 -16.43 16 14 C 0.13 3.21 5.67 86.38 0.49 3.70 16 15 C -0.12 -3.12 5.44 30.59 0.17 -2.96 16 16 C 0.15 5.74 6.26 86.38 0.54 6.28 16 17 N -0.76 -35.21 5.41 -343.48 -1.86 -37.07 16 18 C -0.24 -14.11 10.47 84.03 0.88 -13.23 16 19 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 20 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 21 N -0.99 -63.80 13.97 21.65 0.30 -63.50 16 22 Si 0.96 44.69 27.74 68.60 1.90 46.59 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.25 -9.96 6.52 99.48 0.65 -9.31 16 26 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.87 6.56 -2.39 -0.02 0.86 16 29 H 0.06 1.53 5.42 -2.39 -0.01 1.52 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.75 6.56 -2.39 -0.02 0.73 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.08 0.74 7.56 -2.39 -0.02 0.72 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 39 H 0.41 5.46 7.89 -92.71 -0.73 4.73 16 40 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 46 H 0.37 15.78 5.53 -92.71 -0.51 15.27 16 47 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -73.36 361.55 2.04 -71.31 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.37 Total: 25.29 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 4.63 Total: -8.40 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -4.08 Total: -117.01 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.04 Total: -17.80 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Total: -73.36 2.04 -71.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169720413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.188 kcal (2) G-P(sol) polarization free energy of solvation -73.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds