Wall clock time and date at job start Tue Mar 31 2020 05:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46954 * 2 1 4 4 H 1.09000 * 109.47312 * 305.00062 * 3 2 1 5 5 C 1.52997 * 109.47092 * 65.00182 * 3 2 1 6 6 C 1.52999 * 109.47592 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46626 * 300.00035 * 6 5 3 8 8 H 1.09000 * 109.47050 * 299.99699 * 7 6 5 9 9 C 1.50699 * 109.46866 * 179.97438 * 7 6 5 10 10 O 1.21282 * 120.00041 * 359.97438 * 9 7 6 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 7 6 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47469 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47554 * 180.02562 * 14 13 12 16 16 C 1.36934 * 120.00556 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99747 * 359.97438 * 16 15 14 18 18 C 1.38805 * 120.00392 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99918 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 120.00220 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46667 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46924 * 119.99811 * 20 18 16 23 23 H 1.48500 * 109.47133 * 240.00064 * 20 18 16 24 24 C 1.52997 * 109.47164 * 59.99702 * 7 6 5 25 25 C 1.52996 * 109.46969 * 185.00122 * 3 2 1 26 26 H 1.09001 * 109.47013 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47489 * 299.99965 * 1 2 3 28 28 H 1.08995 * 109.47393 * 60.00173 * 1 2 3 29 29 H 1.09005 * 109.47298 * 240.00331 * 2 1 3 30 30 H 1.08999 * 109.47318 * 120.00320 * 2 1 3 31 31 H 1.09000 * 109.47140 * 59.99774 * 5 3 2 32 32 H 1.09002 * 109.47045 * 299.99867 * 5 3 2 33 33 H 1.08993 * 109.47839 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.47160 * 59.99666 * 6 5 3 35 35 H 0.96996 * 119.99844 * 359.97438 * 11 9 7 36 36 H 1.09004 * 109.46923 * 300.00119 * 12 11 9 37 37 H 1.09004 * 109.47042 * 59.99705 * 12 11 9 38 38 H 1.08992 * 109.47346 * 300.00533 * 13 12 11 39 39 H 1.09004 * 109.46785 * 60.00155 * 13 12 11 40 40 H 1.09004 * 109.46998 * 300.00836 * 14 13 12 41 41 H 1.09004 * 109.46862 * 60.00359 * 14 13 12 42 42 H 0.96999 * 119.99691 * 359.97438 * 15 14 13 43 43 H 0.97001 * 120.00289 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.47140 * 60.00051 * 24 7 6 45 45 H 1.09001 * 109.47230 * 179.97438 * 24 7 6 46 46 H 1.08992 * 109.47534 * 60.00418 * 25 3 2 47 47 H 1.08996 * 109.47134 * 299.99612 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1446 3.5692 1.3072 7 6 3.6694 3.5716 1.1811 8 1 4.1044 3.0328 2.0229 9 6 4.1711 4.9926 1.1804 10 8 3.3863 5.9129 1.2711 11 7 5.4919 5.2410 1.0777 12 6 5.9797 6.6224 1.0775 13 6 7.5044 6.6248 0.9513 14 6 8.0138 8.0675 0.9505 15 7 9.4737 8.0699 0.8291 16 6 10.1571 9.2563 0.8069 17 1 9.6197 10.1904 0.8785 18 6 11.5404 9.2586 0.6924 19 7 12.1953 8.1202 0.6056 20 14 12.4725 10.8772 0.6614 21 1 11.5115 12.0039 0.7726 22 1 13.4234 10.9226 1.8011 23 1 13.2234 10.9917 -0.6147 24 6 4.0742 2.8876 -0.1262 25 6 3.5647 1.4444 -0.1258 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0698 1.5875 2.1491 32 1 0.5489 2.1252 1.3969 33 1 1.8567 4.0564 2.2387 34 1 1.7096 4.1080 0.4654 35 1 6.1195 4.5050 1.0047 36 1 5.5442 7.1613 0.2360 37 1 5.6917 7.1095 2.0092 38 1 7.9395 6.0860 1.7929 39 1 7.7927 6.1376 0.0198 40 1 7.5786 8.6060 0.1086 41 1 7.7255 8.5551 1.8818 42 1 9.9564 7.2310 0.7651 43 1 13.1621 8.1217 0.5260 44 1 3.6392 3.4264 -0.9680 45 1 5.1605 2.8897 -0.2162 46 1 3.8531 0.9572 -1.0571 47 1 3.9994 0.9054 0.7161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171667703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:56 Heat of formation + Delta-G solvation = -75.048366 kcal Electronic energy + Delta-G solvation = -21796.706029 eV Core-core repulsion = 18591.617573 eV Total energy + Delta-G solvation = -3205.088456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.36095 -38.45166 -36.03104 -34.38456 -34.21376 -31.98747 -31.06901 -30.06396 -29.04620 -25.55522 -24.42439 -23.02170 -22.42873 -21.55701 -21.15644 -20.25369 -19.79537 -17.38291 -16.82875 -16.18756 -15.78551 -15.30584 -15.03682 -14.64220 -14.44687 -14.32940 -14.11991 -13.64702 -13.47927 -13.28527 -13.09579 -12.95545 -12.57012 -12.38550 -11.98911 -11.90669 -11.67196 -11.54594 -11.40991 -11.10738 -10.95971 -10.92926 -10.82021 -10.76888 -10.62265 -10.58795 -10.26071 -10.05246 -9.76985 -9.61338 -9.01648 -8.88946 -6.93884 -5.77894 -3.06750 2.63027 3.18575 3.43281 3.49057 3.51364 4.26902 4.30576 4.38538 4.58744 4.68881 4.72927 4.79217 4.98823 5.05505 5.10199 5.14098 5.17682 5.22536 5.28241 5.30404 5.32005 5.52168 5.57145 5.58994 5.63685 5.64479 5.69901 5.76118 5.81076 5.86053 5.94881 5.96618 6.01763 6.07199 6.08530 6.19544 6.19721 6.31973 6.49383 6.78880 6.83133 7.50691 7.70321 8.22598 8.41133 9.52319 10.09475 10.44190 11.45207 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047409 B = 0.002182 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.459278 B =12828.836529 C =13267.063085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.091 4.091 4 H 0.071 0.929 5 C -0.115 4.115 6 C -0.099 4.099 7 C -0.106 4.106 8 H 0.096 0.904 9 C 0.513 3.487 10 O -0.544 6.544 11 N -0.728 5.728 12 C 0.122 3.878 13 C -0.137 4.137 14 C 0.156 3.844 15 N -0.734 5.734 16 C -0.239 4.239 17 H 0.072 0.928 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.111 4.111 25 C -0.112 4.112 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.400 0.600 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.055 -18.644 -0.323 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.152 4.152 6 C -0.137 4.137 7 C -0.127 4.127 8 H 0.114 0.886 9 C 0.299 3.701 10 O -0.421 6.421 11 N -0.379 5.379 12 C -0.002 4.002 13 C -0.175 4.175 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.149 4.149 25 C -0.150 4.150 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.584 -17.768 -0.255 28.737 hybrid contribution 1.196 0.263 -0.066 1.227 sum -21.388 -17.506 -0.321 27.640 Atomic orbital electron populations 1.21826 0.95976 1.01419 1.01987 1.21570 0.95878 0.96377 1.01903 1.21237 0.95463 0.95807 0.98394 0.91096 1.21662 1.00878 0.95344 0.97344 1.21338 0.92616 0.96435 1.03278 1.21365 0.98196 0.92932 1.00236 0.88637 1.20686 0.82196 0.91384 0.75819 1.90694 1.55394 1.46614 1.49369 1.46124 1.07509 1.09540 1.74725 1.21351 0.94518 0.82025 1.02323 1.21937 0.92876 1.00117 1.02602 1.20523 0.86353 0.92211 0.98124 1.42344 0.99980 1.06570 1.88910 1.19300 0.89471 0.86194 1.42081 0.91024 1.24757 0.96436 0.96965 1.02978 1.69669 1.07137 1.24014 1.57508 0.86091 0.79860 0.82919 0.77188 1.20503 1.21836 1.21842 1.21543 1.01041 0.96030 0.96276 1.21588 0.95260 0.95963 1.02180 0.93001 0.92432 0.92805 0.92090 0.92035 0.91950 0.91479 0.91269 0.91227 0.76592 0.91452 0.91464 0.91336 0.91335 0.96061 0.96065 0.78314 0.93560 0.91311 0.91288 0.91591 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 37.16 0.36 -0.48 16 2 C -0.12 -0.67 5.40 -26.73 -0.14 -0.82 16 3 C -0.09 -0.57 2.19 -90.62 -0.20 -0.77 16 4 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 5 C -0.11 -0.78 4.96 -26.73 -0.13 -0.91 16 6 C -0.10 -0.89 4.49 -26.73 -0.12 -1.01 16 7 C -0.11 -0.94 2.53 -91.77 -0.23 -1.17 16 8 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 9 C 0.51 6.43 7.15 -10.99 -0.08 6.35 16 10 O -0.54 -9.02 15.98 5.56 0.09 -8.93 16 11 N -0.73 -8.47 5.45 -60.29 -0.33 -8.80 16 12 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 13 C -0.14 -2.11 5.44 -26.74 -0.15 -2.26 16 14 C 0.16 3.15 6.26 -4.05 -0.03 3.12 16 15 N -0.73 -18.81 5.60 -59.92 -0.34 -19.14 16 16 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 17 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 19 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 20 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 C -0.11 -0.83 5.10 -26.71 -0.14 -0.97 16 25 C -0.11 -0.70 5.21 -26.71 -0.14 -0.84 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.43 6.57 -51.93 -0.34 0.09 16 33 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.40 3.67 7.89 -40.82 -0.32 3.35 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.47 7.56 -51.93 -0.39 0.08 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -32.68 369.39 -9.43 -42.11 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.86 Total: 4.91 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.26 Total: -5.60 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.06 Total: -55.63 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.68 -9.43 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171667703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.941 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds