Wall clock time and date at job start Tue Mar 31 2020 06:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47070 * 2 1 4 4 N 1.46904 * 109.47103 * 183.29928 * 3 2 1 5 5 C 1.46909 * 110.99779 * 65.32998 * 4 3 2 6 6 C 1.50699 * 109.46994 * 60.65301 * 5 4 3 7 7 H 1.08005 * 120.00077 * 4.45074 * 6 5 4 8 8 C 1.37871 * 120.00174 * 184.44655 * 6 5 4 9 9 N 1.31513 * 120.00423 * 184.96178 * 8 6 5 10 10 Si 1.86808 * 119.99769 * 4.96722 * 8 6 5 11 11 H 1.48499 * 109.47118 * 94.60679 * 10 8 6 12 12 H 1.48494 * 109.47053 * 214.60780 * 10 8 6 13 13 H 1.48496 * 109.46741 * 334.60673 * 10 8 6 14 14 C 1.46894 * 110.99927 * 189.28032 * 4 3 2 15 15 C 1.53118 * 109.52365 * 178.43101 * 14 4 3 16 16 C 1.53041 * 109.29158 * 297.70813 * 15 14 4 17 17 H 1.08994 * 109.53129 * 180.67645 * 16 15 14 18 18 C 1.53056 * 109.44695 * 60.63694 * 16 15 14 19 19 O 1.43025 * 109.26492 * 296.66280 * 18 16 15 20 20 C 1.43015 * 113.68089 * 301.16298 * 19 18 16 21 21 C 1.53054 * 109.29091 * 58.82054 * 20 19 18 22 22 H 1.09000 * 109.52817 * 183.41923 * 21 20 19 23 23 C 1.53036 * 109.44630 * 63.38265 * 21 20 19 24 24 N 1.46932 * 109.47410 * 300.73074 * 16 15 14 25 25 C 1.46901 * 110.99961 * 297.94785 * 24 16 15 26 26 H 1.09006 * 109.46838 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47603 * 300.00078 * 1 2 3 28 28 H 1.09003 * 109.47325 * 60.00346 * 1 2 3 29 29 H 1.09000 * 109.46989 * 239.99867 * 2 1 3 30 30 H 1.08996 * 109.46996 * 120.00230 * 2 1 3 31 31 H 1.08993 * 109.47226 * 63.30080 * 3 2 1 32 32 H 1.09006 * 109.47129 * 303.29534 * 3 2 1 33 33 H 1.08992 * 109.46715 * 180.65011 * 5 4 3 34 34 H 1.08997 * 109.47109 * 300.65293 * 5 4 3 35 35 H 0.97000 * 119.99649 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.53024 * 298.62269 * 14 4 3 37 37 H 1.09005 * 109.49927 * 57.64516 * 15 14 4 38 38 H 1.08999 * 109.50385 * 177.75973 * 15 14 4 39 39 H 1.08998 * 109.50802 * 56.60035 * 18 16 15 40 40 H 1.09009 * 109.50624 * 176.69148 * 18 16 15 41 41 H 1.09003 * 109.50390 * 298.87672 * 20 19 18 42 42 H 1.09003 * 109.50207 * 178.76529 * 20 19 18 43 43 H 1.09003 * 109.50709 * 179.46548 * 23 21 20 44 44 H 1.09001 * 109.53757 * 59.36346 * 23 21 20 45 45 H 1.09001 * 109.47390 * 184.02232 * 25 24 16 46 46 H 1.09006 * 109.46951 * 304.01585 * 25 24 16 47 47 H 1.08997 * 109.47523 * 64.01469 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5069 1.4432 -0.0797 5 6 3.9646 0.8950 -1.3635 6 6 3.4321 1.7426 -2.4901 7 1 2.8760 2.6426 -2.2725 8 6 3.6550 1.3694 -3.7985 9 7 3.2762 2.1575 -4.7808 10 14 4.4949 -0.2560 -4.1759 11 1 3.4669 -1.3002 -4.4165 12 1 5.3413 -0.1063 -5.3868 13 1 5.3441 -0.6533 -3.0244 14 6 4.0452 2.7924 0.1385 15 6 5.5748 2.7475 0.0872 16 6 6.0925 1.8532 1.2161 17 1 7.1819 1.8281 1.1906 18 6 5.5448 0.4355 1.0350 19 8 4.1193 0.4624 1.1484 20 6 3.6522 0.9689 2.4017 21 6 4.1782 2.3926 2.5993 22 1 3.8752 2.7601 3.5797 23 6 3.6031 3.3036 1.5125 24 7 5.6448 2.3881 2.5092 25 6 6.1904 3.7323 2.7403 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.7258 1.9389 0.9180 32 1 1.6292 1.9731 -0.8590 33 1 5.0541 0.8966 -1.3914 34 1 3.5997 -0.1261 -1.4734 35 1 3.4327 1.8946 -5.7013 36 1 3.6734 3.4628 -0.6364 37 1 5.8950 2.3432 -0.8731 38 1 5.9728 3.7549 0.2094 39 1 5.8245 0.0602 0.0506 40 1 5.9594 -0.2159 1.8043 41 1 4.0138 0.3321 3.2091 42 1 2.5623 0.9798 2.4064 43 1 3.9696 4.3199 1.6579 44 1 2.5146 3.2976 1.5701 45 1 5.9024 4.0755 3.7340 46 1 7.2776 3.7004 2.6680 47 1 5.7964 4.4183 1.9905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172139781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:55 Heat of formation + Delta-G solvation = 52.465555 kcal Electronic energy + Delta-G solvation = -26167.420044 eV Core-core repulsion = 22967.861006 eV Total energy + Delta-G solvation = -3199.559038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97160 -36.68107 -35.28934 -33.29147 -32.49018 -32.16944 -30.25755 -27.85177 -27.11699 -25.80371 -24.67493 -23.70664 -22.77988 -21.52123 -20.75738 -19.74120 -17.28946 -16.94648 -16.22137 -15.58905 -15.47688 -14.74151 -14.61614 -14.18727 -14.12128 -14.10820 -13.65698 -13.09510 -12.84660 -12.67933 -12.53315 -12.17461 -12.05757 -11.95518 -11.68847 -11.35878 -11.21321 -11.11146 -10.84347 -10.77524 -10.62975 -10.47657 -10.32766 -10.12257 -10.02537 -9.81109 -9.75372 -9.44321 -9.25025 -8.78419 -8.53199 -7.78314 -6.09519 -5.42513 -4.07020 3.27140 3.35970 3.39168 4.24584 4.40524 4.49304 5.12703 5.14270 5.26255 5.38593 5.46894 5.50464 5.53084 5.60780 5.67252 5.70172 5.79536 5.89688 5.92871 5.95903 6.01068 6.07390 6.09333 6.14054 6.27544 6.31237 6.34601 6.36927 6.43205 6.48025 6.55678 6.62461 6.65705 6.68187 6.87034 7.02066 7.03320 7.08993 7.29865 7.42708 7.46304 7.62909 8.09047 8.16069 8.21183 8.46836 8.94386 9.54959 11.03628 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.008185 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.132972 B = 3419.886707 C = 4085.212017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C 0.036 3.964 4 N -0.381 5.381 5 C 0.133 3.867 6 C -0.544 4.544 7 H 0.072 0.928 8 C 0.072 3.928 9 N -0.900 5.900 10 Si 0.874 3.126 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.262 1.262 14 C 0.079 3.921 15 C -0.139 4.139 16 C 0.063 3.937 17 H 0.072 0.928 18 C 0.027 3.973 19 O -0.246 6.246 20 C 0.029 3.971 21 C 0.064 3.936 22 H 0.070 0.930 23 C -0.145 4.145 24 N -0.527 5.527 25 C 0.020 3.980 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 -0.542 13.921 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.091 4.091 4 N -0.113 5.113 5 C 0.008 3.992 6 C -0.583 4.583 7 H 0.090 0.910 8 C -0.130 4.130 9 N -0.539 5.539 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.187 1.187 14 C -0.029 4.029 15 C -0.178 4.178 16 C -0.046 4.046 17 H 0.090 0.910 18 C -0.053 4.053 19 O -0.154 6.154 20 C -0.051 4.051 21 C -0.045 4.045 22 H 0.088 0.912 23 C -0.184 4.184 24 N -0.250 5.250 25 C -0.129 4.129 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.015 -1.234 14.352 14.545 hybrid contribution 0.062 0.509 -1.486 1.572 sum 2.077 -0.725 12.865 13.052 Atomic orbital electron populations 1.21739 0.97169 1.00582 1.01105 1.21433 0.93695 0.97468 1.02360 1.22314 0.90608 0.96467 0.99696 1.64543 1.06022 1.14322 1.26449 1.20603 0.96260 0.95900 0.86476 1.21684 1.35739 1.10443 0.90432 0.91005 1.24957 0.95005 0.96637 0.96395 1.69940 1.47762 1.36805 0.99371 0.86874 0.80104 0.84771 0.78152 1.20379 1.21517 1.18671 1.21524 0.94282 0.92325 0.94773 1.22124 0.96022 0.99211 1.00400 1.22182 0.98458 0.96817 0.87125 0.91013 1.22647 0.89951 0.92571 1.00146 1.91353 1.15735 1.86165 1.22111 1.22557 0.98681 0.92350 0.91519 1.22148 0.87258 0.98012 0.97050 0.91200 1.22266 1.01090 0.98512 0.96572 1.62472 1.08959 1.22001 1.31604 1.22385 0.99741 0.90381 1.00354 0.93555 0.93683 0.92911 0.91603 0.92046 0.92828 0.93686 0.95172 0.95243 0.92855 0.92885 0.90052 0.92763 0.89933 0.95658 0.95649 0.90382 0.92490 0.91482 0.92209 0.92092 0.94922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.82 16 2 C -0.11 -1.90 5.40 -26.73 -0.14 -2.05 16 3 C 0.04 0.66 3.33 -3.82 -0.01 0.65 16 4 N -0.38 -7.15 0.02 -227.94 -0.01 -7.15 16 5 C 0.13 2.98 2.14 -4.97 -0.01 2.97 16 6 C -0.54 -14.42 8.08 -34.44 -0.28 -14.69 16 7 H 0.07 2.10 6.11 -52.48 -0.32 1.78 16 8 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 10 Si 0.87 21.08 27.43 -169.99 -4.66 16.42 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.26 -6.02 6.64 56.52 0.38 -5.65 16 14 C 0.08 1.43 1.98 -67.59 -0.13 1.29 16 15 C -0.14 -2.39 4.66 -26.65 -0.12 -2.51 16 16 C 0.06 0.98 2.99 -67.65 -0.20 0.78 16 17 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 18 C 0.03 0.44 5.60 37.19 0.21 0.65 16 19 O -0.25 -4.22 4.14 -31.57 -0.13 -4.35 16 20 C 0.03 0.43 5.29 37.19 0.20 0.63 16 21 C 0.06 0.92 2.99 -67.65 -0.20 0.72 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 23 C -0.15 -2.21 4.67 -26.65 -0.12 -2.33 16 24 N -0.53 -7.66 4.92 -226.74 -1.12 -8.77 16 25 C 0.02 0.25 8.86 60.07 0.53 0.78 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.28 6.37 -51.93 -0.33 0.95 16 30 H 0.06 1.00 6.71 -51.93 -0.35 0.65 16 31 H 0.05 0.88 4.62 -51.93 -0.24 0.64 16 32 H 0.04 0.97 6.44 -51.93 -0.33 0.63 16 33 H 0.03 0.69 4.03 -51.93 -0.21 0.48 16 34 H 0.03 0.69 5.38 -51.93 -0.28 0.41 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.05 1.14 6.67 -51.93 -0.35 0.79 16 37 H 0.08 1.58 6.17 -51.93 -0.32 1.26 16 38 H 0.05 0.88 6.58 -51.93 -0.34 0.54 16 39 H 0.08 1.46 6.25 -51.93 -0.32 1.14 16 40 H 0.03 0.41 8.14 -51.92 -0.42 -0.02 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 1.13 5.97 -51.93 -0.31 0.82 16 43 H 0.06 0.83 6.48 -51.93 -0.34 0.49 16 44 H 0.07 1.00 6.08 -51.93 -0.32 0.68 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.03 0.43 4.90 -51.93 -0.25 0.17 16 LS Contribution 313.05 15.07 4.72 4.72 Total: -1.00 -27.97 313.05 -8.03 -36.00 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.58 Total: 2.35 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -0.02 Total: -13.02 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.35 Total: -42.12 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.13 Total: -4.35 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.66 Total: 16.42 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.97 -8.03 -36.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172139781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.464 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds