Wall clock time and date at job start Tue Mar 31 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47230 * 2 1 4 4 H 1.09004 * 109.46596 * 55.03193 * 3 2 1 5 5 C 1.52999 * 109.47445 * 295.03458 * 3 2 1 6 6 C 1.53001 * 109.47328 * 175.02685 * 3 2 1 7 7 H 1.08998 * 109.47302 * 303.07719 * 6 3 2 8 8 N 1.46901 * 109.47051 * 183.07526 * 6 3 2 9 9 C 1.46905 * 110.99571 * 154.99885 * 8 6 3 10 10 C 1.52999 * 109.47437 * 275.00302 * 9 8 6 11 11 C 1.53001 * 109.46866 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47402 * 59.99987 * 11 10 9 13 13 C 1.50699 * 109.47063 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00123 * 120.00088 * 13 12 11 15 15 C 1.37875 * 119.99678 * 299.99710 * 13 12 11 16 16 N 1.31508 * 120.00273 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99855 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47137 * 59.99870 * 17 15 13 19 19 H 1.48493 * 109.47111 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46887 * 299.99990 * 17 15 13 21 21 C 1.52997 * 109.46766 * 299.99966 * 12 11 10 22 22 C 1.53001 * 109.47751 * 60.00077 * 21 12 11 23 23 C 1.50702 * 109.46797 * 63.07893 * 6 3 2 24 24 N 1.34773 * 119.99902 * 273.70019 * 23 6 3 25 25 O 1.21283 * 120.00125 * 93.70246 * 23 6 3 26 26 H 1.09003 * 109.47611 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47532 * 299.99591 * 1 2 3 28 28 H 1.09001 * 109.47666 * 59.99640 * 1 2 3 29 29 H 1.09008 * 109.47327 * 240.00688 * 2 1 3 30 30 H 1.08991 * 109.47587 * 120.00400 * 2 1 3 31 31 H 1.09001 * 109.46508 * 299.99369 * 5 3 2 32 32 H 1.09000 * 109.47400 * 59.99468 * 5 3 2 33 33 H 1.09003 * 109.46757 * 180.02562 * 5 3 2 34 34 H 1.00901 * 110.99721 * 31.05017 * 8 6 3 35 35 H 1.09004 * 109.47148 * 35.00925 * 9 8 6 36 36 H 1.09000 * 109.46658 * 300.00020 * 10 9 8 37 37 H 1.08997 * 109.46870 * 60.00306 * 10 9 8 38 38 H 1.08996 * 109.46842 * 299.99669 * 11 10 9 39 39 H 1.08997 * 109.46589 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.46989 * 59.99354 * 12 11 10 41 41 H 0.97010 * 120.00176 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.47549 * 299.99585 * 21 12 11 43 43 H 1.09006 * 109.46828 * 180.02562 * 21 12 11 44 44 H 1.08997 * 109.47207 * 179.97438 * 22 21 12 45 45 H 1.09005 * 109.46620 * 59.99548 * 22 21 12 46 46 H 0.96999 * 120.00169 * 354.72764 * 24 23 6 47 47 H 0.97001 * 120.00252 * 174.72963 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9813 0.8422 5 6 1.6345 2.1269 -1.3069 6 6 3.5648 1.4443 0.1250 7 1 3.8559 0.9091 1.0288 8 7 4.0484 2.8295 0.1991 9 6 5.3436 2.8987 0.8888 10 6 5.1139 2.9673 2.3999 11 6 6.4629 3.0400 3.1180 12 6 7.2181 4.2893 2.6597 13 6 8.5471 4.3604 3.3666 14 1 9.4636 4.3573 2.7951 15 6 8.5930 4.4297 4.7428 16 7 7.4771 4.4331 5.4386 17 14 10.2404 4.5186 5.6191 18 1 10.9728 5.7314 5.1742 19 1 10.0180 4.5843 7.0858 20 1 11.0399 3.3103 5.2938 21 6 7.4478 4.2205 1.1486 22 6 6.0988 4.1479 0.4303 23 6 4.1682 0.7653 -1.0774 24 7 4.3247 -0.5733 -1.0875 25 8 4.5130 1.4234 -2.0361 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.0688 1.5880 -2.1491 32 1 0.5481 2.1256 -1.3960 33 1 1.9983 3.1544 -1.3070 34 1 3.3685 3.4264 0.6459 35 1 5.9301 2.0113 0.6503 36 1 4.5275 3.8547 2.6382 37 1 4.5756 2.0776 2.7263 38 1 7.0496 2.1529 2.8796 39 1 6.2992 3.0894 4.1945 40 1 6.6313 5.1764 2.8980 41 1 7.5094 4.4822 6.4070 42 1 8.0346 3.3334 0.9102 43 1 7.9862 5.1103 0.8221 44 1 6.2625 4.0994 -0.6462 45 1 5.5121 5.0351 0.6687 46 1 4.1207 -1.0914 -0.2933 47 1 4.6414 -1.0186 -1.8890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:48 Heat of formation + Delta-G solvation = -74.735242 kcal Electronic energy + Delta-G solvation = -23596.978305 eV Core-core repulsion = 20391.903427 eV Total energy + Delta-G solvation = -3205.074878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.12369 -37.88943 -36.56706 -34.22702 -33.46123 -32.21539 -30.12388 -29.59908 -28.19274 -26.39358 -24.28440 -23.67603 -21.62299 -21.35495 -20.27240 -19.71588 -18.71867 -17.10761 -16.62456 -16.28844 -15.98447 -15.28801 -14.68056 -14.60364 -14.21475 -13.81830 -13.64935 -13.19729 -13.11934 -13.02821 -12.64792 -12.37279 -12.18586 -12.09586 -11.81290 -11.60851 -11.32131 -11.08166 -11.01312 -10.90361 -10.75133 -10.66833 -10.41478 -10.22204 -10.09338 -9.97813 -9.67144 -9.56916 -9.34451 -8.93553 -8.65493 -8.29462 -7.94989 -5.94592 -4.00336 2.79286 3.33599 3.37893 3.41172 3.49463 4.22927 4.46852 4.61395 4.68122 4.87418 5.03154 5.09464 5.27859 5.34100 5.39604 5.45044 5.48981 5.51762 5.69915 5.75991 5.81886 5.86692 5.94732 5.99358 6.14140 6.23187 6.29720 6.37053 6.38594 6.46144 6.66268 6.74671 6.80261 6.89766 6.97267 7.14350 7.23490 7.30335 7.46361 7.54706 7.64343 7.78575 8.07142 8.18820 8.41903 8.52423 9.03841 9.64010 11.10730 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027373 B = 0.003757 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.662137 B = 7451.695127 C = 7747.503321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.086 4.086 4 H 0.081 0.919 5 C -0.144 4.144 6 C 0.075 3.925 7 H 0.062 0.938 8 N -0.663 5.663 9 C 0.093 3.907 10 C -0.143 4.143 11 C -0.104 4.104 12 C 0.049 3.951 13 C -0.512 4.512 14 H 0.053 0.947 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.109 4.109 22 C -0.099 4.099 23 C 0.525 3.475 24 N -0.865 5.865 25 O -0.517 6.517 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.345 0.655 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.037 0.963 38 H 0.031 0.969 39 H 0.090 0.910 40 H 0.024 0.976 41 H 0.259 0.741 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.397 0.603 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.652 -10.518 -9.373 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.105 4.105 4 H 0.099 0.901 5 C -0.201 4.201 6 C -0.039 4.039 7 H 0.080 0.920 8 N -0.295 5.295 9 C -0.016 4.016 10 C -0.182 4.182 11 C -0.143 4.143 12 C 0.031 3.969 13 C -0.550 4.550 14 H 0.071 0.929 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.147 4.147 22 C -0.137 4.137 23 C 0.309 3.691 24 N -0.430 5.430 25 O -0.390 6.390 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.109 0.891 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.225 0.775 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -13.273 -9.885 -10.361 19.526 hybrid contribution 0.712 -0.708 1.665 1.944 sum -12.561 -10.593 -8.696 18.591 Atomic orbital electron populations 1.21784 0.95443 1.01539 1.02101 1.21699 0.96508 0.96015 1.02241 1.21267 0.92091 0.97022 1.00154 0.90053 1.21832 1.00163 1.01960 0.96139 1.21493 0.94769 0.92313 0.95366 0.92014 1.60312 1.05522 1.05563 1.58059 1.21674 0.88859 0.99270 0.91761 1.22310 1.00808 0.99692 0.95430 1.21543 0.91742 0.98733 1.02288 1.18645 0.95351 0.94012 0.88915 1.21236 0.92608 1.49791 0.91366 0.92883 1.24960 0.96120 0.95283 0.97632 1.69864 1.25890 1.51053 1.06330 0.86719 0.84593 0.78595 0.78441 1.20332 1.21381 1.20394 1.21633 0.94509 1.00017 0.98515 1.21454 0.96825 0.96252 0.99164 1.20614 0.77375 0.81800 0.89360 1.44032 1.71985 1.08420 1.18599 1.90717 1.47859 1.64079 1.36320 0.92834 0.92640 0.92372 0.91442 0.91826 0.92535 0.92959 0.91227 0.83506 0.91719 0.92611 0.94461 0.95048 0.89121 0.95753 0.93129 0.93695 0.93373 0.92775 0.92773 0.77468 0.77272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.15 0.36 -0.71 16 2 C -0.13 -0.99 4.74 -26.74 -0.13 -1.12 16 3 C -0.09 -0.84 2.08 -90.62 -0.19 -1.03 16 4 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 5 C -0.14 -1.54 8.43 37.16 0.31 -1.23 16 6 C 0.07 0.91 2.03 -68.86 -0.14 0.77 16 7 H 0.06 0.73 7.11 -51.93 -0.37 0.36 16 8 N -0.66 -9.74 5.06 -100.95 -0.51 -10.25 16 9 C 0.09 1.62 2.28 -67.71 -0.15 1.46 16 10 C -0.14 -2.65 5.16 -26.73 -0.14 -2.79 16 11 C -0.10 -2.42 4.98 -26.73 -0.13 -2.55 16 12 C 0.05 1.22 2.10 -91.77 -0.19 1.03 16 13 C -0.51 -14.17 8.56 -34.44 -0.29 -14.47 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.11 -2.35 5.14 -26.73 -0.14 -2.48 16 22 C -0.10 -1.87 5.53 -26.73 -0.15 -2.02 16 23 C 0.52 7.01 5.25 -10.99 -0.06 6.95 16 24 N -0.86 -7.88 7.74 31.22 0.24 -7.64 16 25 O -0.52 -9.17 16.74 5.55 0.09 -9.08 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 29 H 0.07 0.53 6.77 -51.92 -0.35 0.18 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.70 6.71 -51.93 -0.35 0.35 16 32 H 0.05 0.47 6.56 -51.93 -0.34 0.13 16 33 H 0.07 0.84 7.69 -51.93 -0.40 0.44 16 34 H 0.35 4.67 8.05 -39.29 -0.32 4.36 16 35 H 0.06 1.20 7.64 -51.93 -0.40 0.80 16 36 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 37 H 0.04 0.62 7.43 -51.93 -0.39 0.24 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 40 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.40 2.59 8.62 -40.82 -0.35 2.24 16 47 H 0.40 3.18 8.93 -40.82 -0.36 2.81 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -31.14 356.62 -8.80 -39.93 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.47 Total: 6.63 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.13 Total: -16.59 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.36 Total: -42.64 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.14 -8.80 -39.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.802 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds