Wall clock time and date at job start Tue Mar 31 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47230 * 2 1 4 4 H 1.09004 * 109.46596 * 55.03193 * 3 2 1 5 5 C 1.52999 * 109.47445 * 295.03458 * 3 2 1 6 6 C 1.53001 * 109.47328 * 175.02685 * 3 2 1 7 7 H 1.08998 * 109.47302 * 303.07719 * 6 3 2 8 8 N 1.46901 * 109.47051 * 183.07526 * 6 3 2 9 9 C 1.46905 * 110.99571 * 154.99885 * 8 6 3 10 10 C 1.52999 * 109.47437 * 275.00302 * 9 8 6 11 11 C 1.53001 * 109.46866 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47402 * 59.99987 * 11 10 9 13 13 C 1.50699 * 109.47063 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00123 * 120.00088 * 13 12 11 15 15 C 1.37875 * 119.99678 * 299.99710 * 13 12 11 16 16 N 1.31508 * 120.00273 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99855 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47137 * 59.99870 * 17 15 13 19 19 H 1.48493 * 109.47111 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46887 * 299.99990 * 17 15 13 21 21 C 1.52997 * 109.46766 * 299.99966 * 12 11 10 22 22 C 1.53001 * 109.47751 * 60.00077 * 21 12 11 23 23 C 1.50702 * 109.46797 * 63.07893 * 6 3 2 24 24 N 1.34773 * 119.99902 * 273.70019 * 23 6 3 25 25 O 1.21283 * 120.00125 * 93.70246 * 23 6 3 26 26 H 1.09003 * 109.47611 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47532 * 299.99591 * 1 2 3 28 28 H 1.09001 * 109.47666 * 59.99640 * 1 2 3 29 29 H 1.09008 * 109.47327 * 240.00688 * 2 1 3 30 30 H 1.08991 * 109.47587 * 120.00400 * 2 1 3 31 31 H 1.09001 * 109.46508 * 299.99369 * 5 3 2 32 32 H 1.09000 * 109.47400 * 59.99468 * 5 3 2 33 33 H 1.09003 * 109.46757 * 180.02562 * 5 3 2 34 34 H 1.00901 * 110.99721 * 31.05017 * 8 6 3 35 35 H 1.09004 * 109.47148 * 35.00925 * 9 8 6 36 36 H 1.09000 * 109.46658 * 300.00020 * 10 9 8 37 37 H 1.08997 * 109.46870 * 60.00306 * 10 9 8 38 38 H 1.08996 * 109.46842 * 299.99669 * 11 10 9 39 39 H 1.08997 * 109.46589 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.46989 * 59.99354 * 12 11 10 41 41 H 0.97010 * 120.00176 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.47549 * 299.99585 * 21 12 11 43 43 H 1.09006 * 109.46828 * 180.02562 * 21 12 11 44 44 H 1.08997 * 109.47207 * 179.97438 * 22 21 12 45 45 H 1.09005 * 109.46620 * 59.99548 * 22 21 12 46 46 H 0.96999 * 120.00169 * 354.72764 * 24 23 6 47 47 H 0.97001 * 120.00252 * 174.72963 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9813 0.8422 5 6 1.6345 2.1269 -1.3069 6 6 3.5648 1.4443 0.1250 7 1 3.8559 0.9091 1.0288 8 7 4.0484 2.8295 0.1991 9 6 5.3436 2.8987 0.8888 10 6 5.1139 2.9673 2.3999 11 6 6.4629 3.0400 3.1180 12 6 7.2181 4.2893 2.6597 13 6 8.5471 4.3604 3.3666 14 1 9.4636 4.3573 2.7951 15 6 8.5930 4.4297 4.7428 16 7 7.4771 4.4331 5.4386 17 14 10.2404 4.5186 5.6191 18 1 10.9728 5.7314 5.1742 19 1 10.0180 4.5843 7.0858 20 1 11.0399 3.3103 5.2938 21 6 7.4478 4.2205 1.1486 22 6 6.0988 4.1479 0.4303 23 6 4.1682 0.7653 -1.0774 24 7 4.3247 -0.5733 -1.0875 25 8 4.5130 1.4234 -2.0361 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.0688 1.5880 -2.1491 32 1 0.5481 2.1256 -1.3960 33 1 1.9983 3.1544 -1.3070 34 1 3.3685 3.4264 0.6459 35 1 5.9301 2.0113 0.6503 36 1 4.5275 3.8547 2.6382 37 1 4.5756 2.0776 2.7263 38 1 7.0496 2.1529 2.8796 39 1 6.2992 3.0894 4.1945 40 1 6.6313 5.1764 2.8980 41 1 7.5094 4.4822 6.4070 42 1 8.0346 3.3334 0.9102 43 1 7.9862 5.1103 0.8221 44 1 6.2625 4.0994 -0.6462 45 1 5.5121 5.0351 0.6687 46 1 4.1207 -1.0914 -0.2933 47 1 4.6414 -1.0186 -1.8890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:47 Heat of formation + Delta-G solvation = -95.930777 kcal Electronic energy + Delta-G solvation = -23597.897413 eV Core-core repulsion = 20391.903427 eV Total energy + Delta-G solvation = -3205.993986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.17145 -39.41902 -37.55247 -35.70209 -34.41182 -33.94814 -31.38442 -31.17486 -29.48804 -27.59720 -25.93776 -24.61786 -23.24376 -22.61093 -21.55109 -20.81898 -20.24544 -18.38096 -18.01511 -17.60423 -17.10976 -16.57013 -16.19598 -15.72348 -15.41554 -14.98381 -14.86516 -14.55501 -14.53342 -14.27978 -14.04225 -13.89690 -13.52413 -13.03326 -12.94387 -12.89710 -12.77631 -12.58014 -12.48472 -12.29670 -12.19682 -11.83401 -11.77880 -11.73298 -11.50411 -11.40675 -11.18148 -10.89399 -10.70202 -10.56528 -10.47498 -10.35702 -9.21831 -8.06129 -6.20004 1.41402 1.42165 1.49907 1.78025 2.44161 2.59093 3.17798 3.21147 3.77251 3.91711 3.93839 4.06105 4.12924 4.22628 4.36033 4.42421 4.56361 4.61024 4.64287 4.67076 4.76624 4.78605 4.83312 4.85146 4.98145 5.07669 5.09340 5.16625 5.21923 5.23235 5.28338 5.32428 5.39477 5.45914 5.48602 5.56427 5.60501 5.69186 5.97263 6.05184 6.07440 6.21896 6.42778 6.47495 6.61277 6.91436 7.47508 7.50367 8.97020 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027373 B = 0.003757 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.662137 B = 7451.695127 C = 7747.503321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.080 4.080 4 H 0.092 0.908 5 C -0.139 4.139 6 C 0.073 3.927 7 H 0.074 0.926 8 N -0.667 5.667 9 C 0.108 3.892 10 C -0.130 4.130 11 C -0.097 4.097 12 C 0.047 3.953 13 C -0.539 4.539 14 H 0.046 0.954 15 C 0.015 3.985 16 N -0.914 5.914 17 Si 0.949 3.051 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.273 1.273 21 C -0.101 4.101 22 C -0.092 4.092 23 C 0.522 3.478 24 N -0.845 5.845 25 O -0.568 6.568 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.353 0.647 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.023 0.977 39 H 0.060 0.940 40 H -0.006 1.006 41 H 0.260 0.740 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.413 0.587 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.636 -11.989 -9.217 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.100 4.100 4 H 0.110 0.890 5 C -0.196 4.196 6 C -0.041 4.041 7 H 0.092 0.908 8 N -0.299 5.299 9 C -0.002 4.002 10 C -0.169 4.169 11 C -0.135 4.135 12 C 0.029 3.971 13 C -0.577 4.577 14 H 0.065 0.935 15 C -0.183 4.183 16 N -0.553 5.553 17 Si 0.775 3.225 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.198 1.198 21 C -0.139 4.139 22 C -0.130 4.130 23 C 0.306 3.694 24 N -0.410 5.410 25 O -0.445 6.445 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.174 0.826 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.013 0.987 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.244 0.756 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -14.273 -11.403 -10.194 20.921 hybrid contribution 1.005 -0.269 1.610 1.917 sum -13.268 -11.672 -8.584 19.646 Atomic orbital electron populations 1.21776 0.94700 1.02228 1.02076 1.21686 0.97106 0.94478 1.02869 1.21277 0.90231 0.98591 0.99859 0.89001 1.21768 1.01095 1.00678 0.96048 1.21631 0.96358 0.90785 0.95330 0.90790 1.60190 1.04701 1.07524 1.57468 1.21366 0.90105 0.97833 0.90848 1.22155 0.98137 1.00787 0.95795 1.21326 0.94038 0.97333 1.00846 1.18610 0.94103 0.93572 0.90841 1.21607 0.93579 1.50341 0.92135 0.93522 1.25684 0.99463 0.94897 0.98302 1.69995 1.27602 1.51268 1.06481 0.85750 0.80600 0.78706 0.77422 1.19959 1.20735 1.19784 1.21498 0.96181 0.99585 0.96632 1.21352 0.95470 0.97375 0.98787 1.20840 0.76852 0.82770 0.88934 1.43842 1.70322 1.07260 1.19598 1.90700 1.50334 1.65428 1.38057 0.91847 0.92378 0.92700 0.91580 0.90417 0.94401 0.91223 0.92951 0.82622 0.92583 0.92808 0.91974 0.95791 0.92156 0.98740 0.93083 0.94065 0.93857 0.92577 0.92638 0.75630 0.76392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.67 71.98 0.70 -0.99 16 2 C -0.12 -1.56 4.74 30.59 0.15 -1.41 16 3 C -0.08 -1.38 2.08 -10.79 -0.02 -1.40 16 4 H 0.09 1.43 8.07 -2.39 -0.02 1.41 16 5 C -0.14 -2.79 8.43 71.98 0.61 -2.18 16 6 C 0.07 1.62 2.03 44.17 0.09 1.71 16 7 H 0.07 1.52 7.11 -2.39 -0.02 1.50 16 8 N -0.67 -18.62 5.06 -473.28 -2.39 -21.02 16 9 C 0.11 3.63 2.28 44.92 0.10 3.74 16 10 C -0.13 -4.65 5.16 30.59 0.16 -4.49 16 11 C -0.10 -4.51 4.98 30.60 0.15 -4.35 16 12 C 0.05 2.40 2.10 -11.54 -0.02 2.38 16 13 C -0.54 -30.40 8.56 25.60 0.22 -30.18 16 14 H 0.05 2.62 7.74 -2.91 -0.02 2.59 16 15 C 0.02 0.85 5.30 84.66 0.45 1.30 16 16 N -0.91 -52.67 11.32 21.45 0.24 -52.43 16 17 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 C -0.10 -4.41 5.14 30.59 0.16 -4.26 16 22 C -0.09 -3.44 5.53 30.60 0.17 -3.27 16 23 C 0.52 13.16 5.25 87.66 0.46 13.62 16 24 N -0.84 -13.58 7.74 -173.53 -1.34 -14.92 16 25 O -0.57 -19.92 16.74 -3.04 -0.05 -19.97 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.65 6.56 -2.39 -0.02 0.63 16 29 H 0.07 0.86 6.77 -2.38 -0.02 0.85 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.90 6.71 -2.39 -0.02 0.89 16 32 H 0.07 1.13 6.56 -2.39 -0.02 1.11 16 33 H 0.05 1.22 7.69 -2.39 -0.02 1.21 16 34 H 0.35 8.93 8.05 -89.69 -0.72 8.21 16 35 H 0.06 2.01 7.64 -2.39 -0.02 1.99 16 36 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 37 H 0.06 1.93 7.43 -2.39 -0.02 1.91 16 38 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 40 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 46 H 0.41 4.16 8.62 -92.71 -0.80 3.36 16 47 H 0.40 5.70 8.93 -92.71 -0.83 4.88 16 Total: -1.00 -68.28 356.62 0.46 -67.83 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -1.38 Total: 24.25 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 3.36 Total: -29.80 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -3.49 Total: -88.36 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.97 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -68.28 0.46 -67.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.102 kcal (2) G-P(sol) polarization free energy of solvation -68.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds