Wall clock time and date at job start Tue Mar 31 2020 05:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 H 1.09000 * 115.56468 * 29.31713 * 3 2 1 5 5 C 1.53069 * 117.49488 * 243.59932 * 3 2 1 6 6 C 1.52997 * 59.98770 * 252.51450 * 5 3 2 7 7 H 1.09005 * 117.49933 * 107.49853 * 6 5 3 8 8 C 1.50699 * 117.50164 * 252.49742 * 6 5 3 9 9 O 1.21279 * 119.99997 * 68.74808 * 8 6 5 10 10 N 1.34777 * 120.00179 * 248.74458 * 8 6 5 11 11 C 1.46497 * 120.00376 * 179.97438 * 10 8 6 12 12 H 1.09002 * 109.46725 * 35.00314 * 11 10 8 13 13 C 1.52997 * 109.47188 * 275.00479 * 11 10 8 14 14 C 1.52992 * 109.47081 * 155.00022 * 11 10 8 15 15 C 1.52998 * 109.47705 * 295.00160 * 14 11 10 16 16 C 1.52997 * 109.47475 * 180.02562 * 15 14 11 17 17 C 1.53002 * 109.47227 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47447 * 179.97438 * 17 16 15 19 19 C 1.36931 * 120.00182 * 179.97438 * 18 17 16 20 20 H 1.08006 * 120.00235 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00050 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00006 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00113 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47250 * 60.00503 * 23 21 19 25 25 H 1.48501 * 109.47298 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46967 * 300.00378 * 23 21 19 27 27 H 1.09003 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47585 * 299.99556 * 1 2 3 29 29 H 1.09001 * 109.47520 * 59.99855 * 1 2 3 30 30 H 1.09007 * 109.47196 * 240.00142 * 2 1 3 31 31 H 1.09001 * 109.47520 * 120.00145 * 2 1 3 32 32 H 1.09004 * 117.51276 * 145.03545 * 5 3 2 33 33 H 1.09002 * 117.51379 * 359.97438 * 5 3 2 34 34 H 0.97006 * 119.99702 * 0.02562 * 10 8 6 35 35 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 36 36 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 37 37 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 38 38 H 1.09001 * 109.47359 * 55.00482 * 14 11 10 39 39 H 1.09002 * 109.46906 * 175.00501 * 14 11 10 40 40 H 1.09001 * 109.46974 * 300.00556 * 15 14 11 41 41 H 1.09000 * 109.46929 * 59.99736 * 15 14 11 42 42 H 1.09001 * 109.46992 * 299.99656 * 16 15 14 43 43 H 1.08990 * 109.47368 * 59.99938 * 16 15 14 44 44 H 1.09001 * 109.46896 * 300.00110 * 17 16 15 45 45 H 1.09000 * 109.47254 * 59.99441 * 17 16 15 46 46 H 0.97003 * 119.99724 * 359.97438 * 18 17 16 47 47 H 0.96993 * 119.99989 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1717 0.4815 5 6 2.8447 1.9075 -1.2162 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7720 0.1965 8 6 4.0228 2.8620 0.8915 9 8 3.2158 3.6158 1.3929 10 7 5.3423 3.1012 1.0257 11 6 5.8019 4.2720 1.7769 12 1 5.1243 4.4579 2.6102 13 6 5.8235 5.4930 0.8551 14 6 7.2110 4.0129 2.3133 15 6 7.1676 2.8709 3.3306 16 6 8.5767 2.6122 3.8675 17 6 8.5333 1.4698 4.8843 18 7 9.8827 1.2216 5.3980 19 6 10.0913 0.2378 6.3274 20 1 9.2612 -0.3555 6.6814 21 6 11.3700 0.0024 6.8137 22 7 12.3817 0.7250 6.3819 23 14 11.6547 -1.3402 8.0809 24 1 11.2388 -2.6494 7.5171 25 1 13.0960 -1.3888 8.4352 26 1 10.8557 -1.0492 9.2984 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7224 2.9427 -1.5350 33 1 3.0111 1.1857 -2.0159 34 1 5.9878 2.4985 0.6244 35 1 6.5011 5.3071 0.0217 36 1 6.1650 6.3642 1.4141 37 1 4.8195 5.6776 0.4729 38 1 7.8693 3.7399 1.4885 39 1 7.5877 4.9149 2.7956 40 1 6.5093 3.1439 4.1554 41 1 6.7908 1.9689 2.8483 42 1 9.2353 2.3393 3.0429 43 1 8.9530 3.5142 4.3498 44 1 7.8746 1.7422 5.7089 45 1 8.1571 0.5678 4.4016 46 1 10.6283 1.7542 5.0798 47 1 13.2751 0.5608 6.7220 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175348983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:56 Heat of formation + Delta-G solvation = -40.324873 kcal Electronic energy + Delta-G solvation = -21569.370214 eV Core-core repulsion = 18365.787482 eV Total energy + Delta-G solvation = -3203.582733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32007 -37.90184 -36.57703 -35.21348 -33.24045 -32.43149 -31.42390 -30.24419 -27.43924 -25.16392 -24.18015 -23.92235 -22.10829 -21.05839 -20.74965 -20.59998 -20.24558 -17.53084 -16.99731 -16.48626 -15.38480 -15.16941 -14.91460 -14.78309 -14.64768 -14.33268 -13.87829 -13.53748 -13.16262 -13.04429 -12.93929 -12.80000 -12.72189 -12.45192 -12.35579 -11.75910 -11.66142 -11.45233 -11.36720 -11.25539 -10.98832 -10.78595 -10.69736 -10.60633 -10.42705 -10.36088 -10.29109 -10.00196 -9.90841 -9.64922 -9.19857 -8.84071 -6.89045 -5.74035 -3.02438 2.33101 2.94839 3.45635 3.49460 3.50932 3.52217 4.27733 4.43247 4.46822 4.54112 4.65857 4.83049 4.89393 4.91625 4.99954 5.00508 5.10727 5.26671 5.30866 5.41661 5.44721 5.47086 5.56153 5.57703 5.63078 5.65656 5.71355 5.75518 5.80002 5.81332 5.91498 5.96522 6.05284 6.11574 6.25143 6.32024 6.39861 6.42324 6.48212 6.91217 6.95143 7.36373 7.71644 8.09368 8.45467 9.55971 10.15351 10.50004 11.49059 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016844 B = 0.002596 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.910013 B =10784.341898 C =12120.254105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.117 4.117 4 H 0.117 0.883 5 C -0.149 4.149 6 C -0.193 4.193 7 H 0.124 0.876 8 C 0.544 3.456 9 O -0.544 6.544 10 N -0.718 5.718 11 C 0.140 3.860 12 H 0.088 0.912 13 C -0.162 4.162 14 C -0.127 4.127 15 C -0.114 4.114 16 C -0.125 4.125 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.401 0.599 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.699 4.584 -18.111 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.135 4.135 4 H 0.135 0.865 5 C -0.187 4.187 6 C -0.214 4.214 7 H 0.142 0.858 8 C 0.331 3.669 9 O -0.421 6.421 10 N -0.369 5.369 11 C 0.036 3.964 12 H 0.106 0.894 13 C -0.221 4.221 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.163 4.163 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.236 0.764 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.033 0.967 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.285 5.007 -17.613 27.327 hybrid contribution 0.993 -0.872 0.454 1.397 sum -19.293 4.135 -17.159 26.148 Atomic orbital electron populations 1.21739 0.95162 1.01694 1.02106 1.21168 0.96308 0.93589 1.02298 1.22483 0.91370 0.98771 1.00893 0.86457 1.23104 1.02209 1.03037 0.90330 1.22339 0.97918 0.99124 1.02007 0.85811 1.19645 0.82344 0.85347 0.79612 1.90684 1.54001 1.48940 1.48507 1.46046 1.06898 1.28469 1.55507 1.21049 0.96311 0.84717 0.94341 0.89405 1.22171 1.02160 0.97726 1.00013 1.21936 0.94810 1.00292 0.99423 1.21517 0.97874 0.97706 0.98102 1.21725 0.95747 0.99638 0.99226 1.20648 0.88814 0.94313 0.93745 1.42385 1.03650 1.42059 1.49807 1.19212 0.93169 1.09613 1.15021 0.91290 1.24755 0.95709 0.99961 1.00778 1.69652 0.99251 1.42473 1.47051 0.86248 0.76770 0.81657 0.81412 1.21280 1.21664 1.21266 0.92575 0.92460 0.92596 0.91638 0.91238 0.88422 0.87823 0.76421 0.92488 0.91522 0.92390 0.91341 0.90219 0.92013 0.92136 0.92139 0.92052 0.96578 0.96651 0.78348 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.87 37.16 0.37 -0.57 16 2 C -0.10 -0.65 6.22 -26.73 -0.17 -0.82 16 3 C -0.12 -0.96 5.25 -90.58 -0.48 -1.44 16 4 H 0.12 1.18 7.60 -51.93 -0.39 0.78 16 5 C -0.15 -1.06 9.88 -26.70 -0.26 -1.33 16 6 C -0.19 -1.64 5.91 -91.77 -0.54 -2.18 16 7 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 8 C 0.54 6.12 7.58 -10.99 -0.08 6.03 16 9 O -0.54 -8.13 15.92 5.56 0.09 -8.04 16 10 N -0.72 -6.84 4.53 -53.81 -0.24 -7.08 16 11 C 0.14 1.41 2.57 -67.94 -0.17 1.24 16 12 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16 13 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 14 C -0.13 -1.27 4.75 -26.74 -0.13 -1.40 16 15 C -0.11 -1.43 5.10 -26.73 -0.14 -1.57 16 16 C -0.13 -2.02 5.33 -26.73 -0.14 -2.16 16 17 C 0.15 3.17 6.26 -4.04 -0.03 3.15 16 18 N -0.74 -19.37 5.60 -59.91 -0.34 -19.71 16 19 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 22 N -0.94 -28.85 13.06 55.49 0.72 -28.13 16 23 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.38 7.88 -51.93 -0.41 -0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.56 8.03 -51.93 -0.42 0.14 16 34 H 0.40 3.02 8.60 -40.82 -0.35 2.67 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.38 10.51 7.67 -40.82 -0.31 10.19 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 385.21 15.07 5.80 5.80 Total: -1.00 -33.36 385.21 -9.64 -43.00 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -8.99 Total: 6.17 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.66 Total: -9.79 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.15 Total: -54.92 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.36 -9.64 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175348983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.674 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds