Wall clock time and date at job start Tue Mar 31 2020 05:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 H 1.09000 * 115.56468 * 29.31713 * 3 2 1 5 5 C 1.53069 * 117.49488 * 243.59932 * 3 2 1 6 6 C 1.52997 * 59.98770 * 252.51450 * 5 3 2 7 7 H 1.09005 * 117.49933 * 107.49853 * 6 5 3 8 8 C 1.50699 * 117.50164 * 252.49742 * 6 5 3 9 9 O 1.21279 * 119.99997 * 68.74808 * 8 6 5 10 10 N 1.34777 * 120.00179 * 248.74458 * 8 6 5 11 11 C 1.46497 * 120.00376 * 179.97438 * 10 8 6 12 12 H 1.09002 * 109.46725 * 35.00314 * 11 10 8 13 13 C 1.52997 * 109.47188 * 275.00479 * 11 10 8 14 14 C 1.52992 * 109.47081 * 155.00022 * 11 10 8 15 15 C 1.52998 * 109.47705 * 295.00160 * 14 11 10 16 16 C 1.52997 * 109.47475 * 180.02562 * 15 14 11 17 17 C 1.53002 * 109.47227 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47447 * 179.97438 * 17 16 15 19 19 C 1.36931 * 120.00182 * 179.97438 * 18 17 16 20 20 H 1.08006 * 120.00235 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00050 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00006 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00113 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47250 * 60.00503 * 23 21 19 25 25 H 1.48501 * 109.47298 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46967 * 300.00378 * 23 21 19 27 27 H 1.09003 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47585 * 299.99556 * 1 2 3 29 29 H 1.09001 * 109.47520 * 59.99855 * 1 2 3 30 30 H 1.09007 * 109.47196 * 240.00142 * 2 1 3 31 31 H 1.09001 * 109.47520 * 120.00145 * 2 1 3 32 32 H 1.09004 * 117.51276 * 145.03545 * 5 3 2 33 33 H 1.09002 * 117.51379 * 359.97438 * 5 3 2 34 34 H 0.97006 * 119.99702 * 0.02562 * 10 8 6 35 35 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 36 36 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 37 37 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 38 38 H 1.09001 * 109.47359 * 55.00482 * 14 11 10 39 39 H 1.09002 * 109.46906 * 175.00501 * 14 11 10 40 40 H 1.09001 * 109.46974 * 300.00556 * 15 14 11 41 41 H 1.09000 * 109.46929 * 59.99736 * 15 14 11 42 42 H 1.09001 * 109.46992 * 299.99656 * 16 15 14 43 43 H 1.08990 * 109.47368 * 59.99938 * 16 15 14 44 44 H 1.09001 * 109.46896 * 300.00110 * 17 16 15 45 45 H 1.09000 * 109.47254 * 59.99441 * 17 16 15 46 46 H 0.97003 * 119.99724 * 359.97438 * 18 17 16 47 47 H 0.96993 * 119.99989 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1717 0.4815 5 6 2.8447 1.9075 -1.2162 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7720 0.1965 8 6 4.0228 2.8620 0.8915 9 8 3.2158 3.6158 1.3929 10 7 5.3423 3.1012 1.0257 11 6 5.8019 4.2720 1.7769 12 1 5.1243 4.4579 2.6102 13 6 5.8235 5.4930 0.8551 14 6 7.2110 4.0129 2.3133 15 6 7.1676 2.8709 3.3306 16 6 8.5767 2.6122 3.8675 17 6 8.5333 1.4698 4.8843 18 7 9.8827 1.2216 5.3980 19 6 10.0913 0.2378 6.3274 20 1 9.2612 -0.3555 6.6814 21 6 11.3700 0.0024 6.8137 22 7 12.3817 0.7250 6.3819 23 14 11.6547 -1.3402 8.0809 24 1 11.2388 -2.6494 7.5171 25 1 13.0960 -1.3888 8.4352 26 1 10.8557 -1.0492 9.2984 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7224 2.9427 -1.5350 33 1 3.0111 1.1857 -2.0159 34 1 5.9878 2.4985 0.6244 35 1 6.5011 5.3071 0.0217 36 1 6.1650 6.3642 1.4141 37 1 4.8195 5.6776 0.4729 38 1 7.8693 3.7399 1.4885 39 1 7.5877 4.9149 2.7956 40 1 6.5093 3.1439 4.1554 41 1 6.7908 1.9689 2.8483 42 1 9.2353 2.3393 3.0429 43 1 8.9530 3.5142 4.3498 44 1 7.8746 1.7422 5.7089 45 1 8.1571 0.5678 4.4016 46 1 10.6283 1.7542 5.0798 47 1 13.2751 0.5608 6.7220 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175348983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:55 Heat of formation + Delta-G solvation = -60.458754 kcal Electronic energy + Delta-G solvation = -21570.243285 eV Core-core repulsion = 18365.787482 eV Total energy + Delta-G solvation = -3204.455803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15220 -38.66291 -37.63799 -36.74165 -34.77342 -33.18590 -32.72049 -31.57409 -28.83492 -26.14202 -25.58258 -24.60046 -23.60017 -22.07000 -21.82726 -21.45009 -20.99424 -19.13353 -18.30797 -17.35408 -16.69457 -16.35233 -16.09219 -15.67860 -15.50396 -15.36572 -15.23271 -15.03295 -14.55599 -14.20405 -14.07891 -13.52603 -13.41756 -13.22988 -13.05016 -12.98073 -12.89137 -12.84532 -12.46769 -12.29684 -12.20753 -12.18107 -11.92898 -11.89167 -11.83127 -11.50752 -11.41037 -11.24056 -11.01806 -10.94041 -10.72754 -10.06415 -9.02781 -7.97303 -5.26846 1.45952 1.49589 1.50702 1.55887 2.18712 2.54775 2.86787 3.35682 3.56410 3.68622 3.78678 3.87425 4.02700 4.04099 4.12259 4.22940 4.28570 4.34111 4.40649 4.48670 4.56559 4.59652 4.63226 4.77048 4.78097 4.85979 4.90775 4.93805 4.96763 4.98785 5.02528 5.12178 5.15763 5.22524 5.24876 5.29142 5.30072 5.43900 5.44585 5.49171 5.51560 5.60526 6.25491 6.58988 7.28011 7.31059 8.07553 8.31239 9.26136 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016844 B = 0.002596 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.910013 B =10784.341898 C =12120.254105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.126 4.126 4 H 0.092 0.908 5 C -0.132 4.132 6 C -0.198 4.198 7 H 0.144 0.856 8 C 0.538 3.462 9 O -0.589 6.589 10 N -0.709 5.709 11 C 0.142 3.858 12 H 0.064 0.936 13 C -0.156 4.156 14 C -0.116 4.116 15 C -0.105 4.105 16 C -0.112 4.112 17 C 0.148 3.852 18 N -0.749 5.749 19 C -0.252 4.252 20 H 0.073 0.927 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.977 3.023 24 H -0.276 1.276 25 H -0.292 1.292 26 H -0.278 1.278 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.130 0.870 34 H 0.414 0.586 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.012 0.988 45 H 0.018 0.982 46 H 0.374 0.626 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.812 3.618 -19.296 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 C -0.145 4.145 4 H 0.110 0.890 5 C -0.169 4.169 6 C -0.219 4.219 7 H 0.162 0.838 8 C 0.326 3.674 9 O -0.470 6.470 10 N -0.360 5.360 11 C 0.038 3.962 12 H 0.082 0.918 13 C -0.214 4.214 14 C -0.154 4.154 15 C -0.143 4.143 16 C -0.150 4.150 17 C 0.022 3.978 18 N -0.392 5.392 19 C -0.384 4.384 20 H 0.091 0.909 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.805 3.195 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.148 0.852 34 H 0.250 0.750 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.030 0.970 45 H 0.036 0.964 46 H 0.206 0.794 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.415 4.027 -18.819 28.056 hybrid contribution 0.975 -0.538 0.819 1.382 sum -19.440 3.490 -18.000 26.723 Atomic orbital electron populations 1.21744 0.95005 1.02197 1.01799 1.21160 0.96453 0.92474 1.02839 1.22465 0.90957 0.99244 1.01815 0.88978 1.23183 1.00289 1.03291 0.90174 1.22392 0.98231 0.98552 1.02703 0.83815 1.20166 0.82400 0.85661 0.79220 1.90664 1.55161 1.50679 1.50504 1.46008 1.06767 1.28391 1.54849 1.20959 0.95718 0.85493 0.94048 0.91785 1.22106 1.01557 0.97507 1.00259 1.21835 0.94917 0.99453 0.99146 1.21419 0.95276 0.99075 0.98513 1.21595 0.97997 0.97436 0.97954 1.20854 0.86133 0.96197 0.94638 1.42627 1.05409 1.41503 1.49666 1.19621 0.93458 1.09997 1.15283 0.90902 1.25631 0.95531 1.02582 1.03170 1.69809 0.99444 1.44226 1.48527 0.85168 0.76397 0.79011 0.78929 1.20195 1.21828 1.20427 0.91614 0.93520 0.92225 0.89961 0.91725 0.89183 0.85224 0.74955 0.91033 0.90574 0.94033 0.89668 0.89595 0.92828 0.91553 0.91764 0.92439 0.97022 0.96393 0.79395 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.87 71.98 0.71 -1.04 16 2 C -0.09 -1.12 6.22 30.59 0.19 -0.93 16 3 C -0.13 -2.01 5.25 -10.77 -0.06 -2.07 16 4 H 0.09 1.95 7.60 -2.39 -0.02 1.93 16 5 C -0.13 -1.65 9.88 30.62 0.30 -1.35 16 6 C -0.20 -3.11 5.91 -11.54 -0.07 -3.17 16 7 H 0.14 1.66 8.14 -2.38 -0.02 1.64 16 8 C 0.54 11.90 7.58 87.66 0.66 12.56 16 9 O -0.59 -18.18 15.92 -3.03 -0.05 -18.23 16 10 N -0.71 -12.59 4.53 -442.56 -2.00 -14.60 16 11 C 0.14 2.72 2.57 44.99 0.12 2.84 16 12 H 0.06 1.56 7.58 -2.39 -0.02 1.55 16 13 C -0.16 -2.63 9.48 71.98 0.68 -1.95 16 14 C -0.12 -2.07 4.75 30.59 0.15 -1.93 16 15 C -0.10 -2.47 5.10 30.59 0.16 -2.31 16 16 C -0.11 -3.46 5.33 30.59 0.16 -3.30 16 17 C 0.15 6.09 6.26 86.38 0.54 6.63 16 18 N -0.75 -39.54 5.60 -343.45 -1.92 -41.46 16 19 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 20 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 22 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 23 Si 0.98 46.67 29.55 68.60 2.03 48.69 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.73 7.88 -2.38 -0.02 0.71 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.13 0.96 8.03 -2.39 -0.02 0.94 16 34 H 0.41 5.27 8.60 -92.70 -0.80 4.48 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.49 7.75 -2.39 -0.02 1.47 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.37 20.71 7.67 -92.71 -0.71 20.00 16 47 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -72.11 385.21 2.60 -69.51 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.58 Total: 29.70 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 4.85 Total: -13.76 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -3.65 Total: -115.92 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.05 Total: -18.23 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -72.11 2.60 -69.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175348983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.054 kcal (2) G-P(sol) polarization free energy of solvation -72.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds