Wall clock time and date at job start Tue Mar 31 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47172 * 2 1 4 4 H 1.09000 * 115.55913 * 29.31714 * 3 2 1 5 5 C 1.53064 * 117.49531 * 243.60445 * 3 2 1 6 6 C 1.53002 * 117.49864 * 174.99831 * 3 2 1 7 7 H 1.09001 * 117.49521 * 359.97438 * 6 3 2 8 8 C 1.50699 * 117.49984 * 214.97962 * 6 3 2 9 9 O 1.21279 * 119.99884 * 0.09170 * 8 6 3 10 10 N 1.34770 * 119.99961 * 180.09328 * 8 6 3 11 11 C 1.46500 * 119.99955 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.47175 * 324.99716 * 11 10 8 13 13 C 1.53006 * 109.46998 * 84.99585 * 11 10 8 14 14 C 1.52997 * 109.47204 * 204.99611 * 11 10 8 15 15 C 1.52996 * 109.46894 * 64.99698 * 14 11 10 16 16 C 1.53008 * 109.47120 * 180.02562 * 15 14 11 17 17 C 1.52997 * 109.47301 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.47230 * 179.97438 * 17 16 15 19 19 C 1.36939 * 120.00005 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00229 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99772 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00131 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99676 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47044 * 60.00643 * 23 21 19 25 25 H 1.48506 * 109.47073 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47388 * 300.00068 * 23 21 19 27 27 H 1.08991 * 109.47343 * 59.99577 * 1 2 3 28 28 H 1.08993 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46723 * 299.99862 * 1 2 3 30 30 H 1.09000 * 109.46994 * 240.00534 * 2 1 3 31 31 H 1.09001 * 109.47196 * 120.00251 * 2 1 3 32 32 H 1.08997 * 117.51525 * 145.03684 * 5 3 2 33 33 H 1.09005 * 117.51508 * 359.97438 * 5 3 2 34 34 H 0.96997 * 119.99935 * 359.97438 * 10 8 6 35 35 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 36 36 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 37 37 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 38 38 H 1.08994 * 109.47510 * 185.00146 * 14 11 10 39 39 H 1.09001 * 109.47096 * 305.00009 * 14 11 10 40 40 H 1.08998 * 109.47867 * 299.99927 * 15 14 11 41 41 H 1.08993 * 109.47122 * 60.00537 * 15 14 11 42 42 H 1.09003 * 109.46865 * 299.99902 * 16 15 14 43 43 H 1.09001 * 109.47171 * 60.00127 * 16 15 14 44 44 H 1.09004 * 109.46818 * 300.00154 * 17 16 15 45 45 H 1.09001 * 109.47187 * 59.99791 * 17 16 15 46 46 H 0.97005 * 119.99948 * 0.02562 * 18 17 16 47 47 H 0.97006 * 120.00247 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3884 2.1717 0.4815 5 6 2.8447 1.9076 -1.2162 6 6 3.5502 1.6579 0.1183 7 1 4.1803 0.7719 0.1966 8 6 4.0229 2.8620 0.8914 9 8 3.2159 3.6158 1.3929 10 7 5.3424 3.1012 1.0256 11 6 5.8019 4.2715 1.7777 12 1 5.1088 5.0983 1.6225 13 6 5.8617 3.9289 3.2677 14 6 7.1950 4.6756 1.2910 15 6 7.1124 5.1372 -0.1653 16 6 8.5056 5.5408 -0.6522 17 6 8.4230 6.0030 -2.1084 18 7 9.7568 6.3900 -2.5744 19 6 9.9306 6.8396 -3.8561 20 1 9.0842 6.9093 -4.5234 21 6 11.1946 7.2058 -4.2978 22 7 12.2261 7.1204 -3.4848 23 14 11.4315 7.8198 -6.0460 24 1 10.6104 9.0387 -6.2581 25 1 12.8640 8.1427 -6.2675 26 1 11.0087 6.7655 -7.0025 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.7225 2.9427 -1.5350 33 1 3.0110 1.1858 -2.0159 34 1 5.9878 2.4982 0.6249 35 1 6.2040 4.7994 3.8272 36 1 4.8693 3.6409 3.6143 37 1 6.5548 3.1021 3.4229 38 1 7.5739 5.4894 1.9092 39 1 7.8674 3.8208 1.3637 40 1 6.7336 4.3234 -0.7836 41 1 6.4401 5.9920 -0.2379 42 1 8.8849 6.3546 -0.0341 43 1 9.1777 4.6857 -0.5797 44 1 8.0435 5.1895 -2.7267 45 1 7.7510 6.8582 -2.1806 46 1 10.5171 6.3271 -1.9752 47 1 13.1094 7.3767 -3.7933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175348984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:59 Heat of formation + Delta-G solvation = -40.301332 kcal Electronic energy + Delta-G solvation = -21583.400036 eV Core-core repulsion = 18379.818324 eV Total energy + Delta-G solvation = -3203.581712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.31332 -37.89403 -36.57469 -35.21208 -33.23967 -32.44494 -31.42148 -30.23822 -27.43754 -25.17107 -24.19598 -23.89878 -22.09562 -21.03533 -20.75692 -20.60105 -20.24552 -17.52242 -16.99286 -16.48738 -15.38511 -15.14889 -15.04003 -14.70572 -14.56658 -14.35875 -13.92514 -13.51067 -13.15807 -13.02038 -12.94365 -12.82093 -12.70993 -12.44852 -12.35581 -11.75897 -11.66521 -11.46165 -11.36979 -11.24796 -10.99087 -10.78521 -10.70066 -10.58877 -10.42584 -10.35425 -10.29088 -10.00136 -9.90095 -9.64916 -9.19690 -8.84077 -6.89014 -5.74015 -3.02406 2.34133 2.94587 3.45611 3.49421 3.50887 3.54667 4.28290 4.44781 4.48430 4.55501 4.66007 4.81469 4.84928 4.95418 4.98353 5.00049 5.09102 5.26776 5.36426 5.42172 5.45429 5.47916 5.56267 5.58231 5.63235 5.65209 5.71383 5.74718 5.80027 5.80208 5.91840 5.96827 6.04714 6.11829 6.25218 6.32100 6.39893 6.42498 6.48206 6.91194 6.95169 7.36602 7.71652 8.09617 8.45396 9.55940 10.15378 10.50006 11.49012 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018907 B = 0.002542 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.598780 B =11012.591377 C =12218.903202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.119 4.119 4 H 0.117 0.883 5 C -0.147 4.147 6 C -0.193 4.193 7 H 0.122 0.878 8 C 0.544 3.456 9 O -0.544 6.544 10 N -0.718 5.718 11 C 0.140 3.860 12 H 0.088 0.912 13 C -0.163 4.163 14 C -0.127 4.127 15 C -0.114 4.114 16 C -0.125 4.125 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.401 0.599 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.232 -14.867 11.883 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.137 4.137 4 H 0.135 0.865 5 C -0.184 4.184 6 C -0.214 4.214 7 H 0.140 0.860 8 C 0.330 3.670 9 O -0.421 6.421 10 N -0.369 5.369 11 C 0.036 3.964 12 H 0.106 0.894 13 C -0.221 4.221 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.163 4.163 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.822 -14.251 12.083 27.240 hybrid contribution 0.976 0.045 -0.962 1.372 sum -18.846 -14.206 11.121 26.089 Atomic orbital electron populations 1.21739 0.95163 1.01631 1.02193 1.21158 0.96307 0.93654 1.02123 1.22488 0.91296 0.98670 1.01277 0.86478 1.23129 1.01690 1.03388 0.90238 1.22320 0.97738 0.98978 1.02389 0.86002 1.19652 0.82332 0.85471 0.79501 1.90684 1.54004 1.48650 1.48808 1.46045 1.06904 1.28566 1.55417 1.21050 0.96418 0.88251 0.90687 0.89435 1.22175 1.02175 1.02042 0.95711 1.21935 0.94978 1.01958 0.97586 1.21516 0.97956 1.01050 0.94667 1.21727 0.95900 1.01032 0.97674 1.20647 0.89057 0.96237 0.91579 1.42385 1.04002 1.78777 1.12728 1.19211 0.93391 1.35347 0.89072 0.91291 1.24755 0.95690 1.02541 0.98230 1.69652 0.99053 1.54622 1.35067 0.86247 0.76689 0.78691 0.84451 1.21268 1.21673 1.21285 0.92453 0.92631 0.92526 0.91600 0.91499 0.88153 0.87708 0.76428 0.91522 0.92330 0.92504 0.90226 0.91348 0.92100 0.92040 0.92070 0.92136 0.96638 0.96594 0.78350 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.87 37.16 0.37 -0.52 16 2 C -0.10 -0.60 6.22 -26.73 -0.17 -0.77 16 3 C -0.12 -0.98 5.25 -90.58 -0.48 -1.46 16 4 H 0.12 1.18 7.60 -51.93 -0.39 0.78 16 5 C -0.15 -1.18 9.88 -26.70 -0.26 -1.44 16 6 C -0.19 -1.64 5.91 -91.77 -0.54 -2.18 16 7 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 8 C 0.54 6.12 7.58 -10.99 -0.08 6.03 16 9 O -0.54 -8.13 15.92 5.56 0.09 -8.04 16 10 N -0.72 -6.85 4.53 -53.81 -0.24 -7.09 16 11 C 0.14 1.42 2.57 -67.93 -0.17 1.24 16 12 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 13 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 14 C -0.13 -1.27 4.75 -26.73 -0.13 -1.39 16 15 C -0.11 -1.42 5.10 -26.73 -0.14 -1.56 16 16 C -0.13 -2.01 5.33 -26.73 -0.14 -2.15 16 17 C 0.15 3.17 6.26 -4.05 -0.03 3.14 16 18 N -0.73 -19.34 5.60 -59.91 -0.34 -19.67 16 19 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 22 N -0.94 -28.81 13.06 55.49 0.72 -28.08 16 23 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.37 7.88 -51.93 -0.41 -0.04 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 34 H 0.40 3.02 8.60 -40.82 -0.35 2.67 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -33.29 385.20 -9.64 -42.93 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.99 Total: 6.24 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -1.66 Total: -9.84 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.15 Total: -54.85 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.29 -9.64 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175348984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.628 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds