Wall clock time and date at job start Tue Mar 31 2020 05:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47172 * 2 1 4 4 H 1.09000 * 115.55913 * 29.31714 * 3 2 1 5 5 C 1.53064 * 117.49531 * 243.60445 * 3 2 1 6 6 C 1.53002 * 117.49864 * 174.99831 * 3 2 1 7 7 H 1.09001 * 117.49521 * 359.97438 * 6 3 2 8 8 C 1.50699 * 117.49984 * 214.97962 * 6 3 2 9 9 O 1.21279 * 119.99884 * 0.09170 * 8 6 3 10 10 N 1.34770 * 119.99961 * 180.09328 * 8 6 3 11 11 C 1.46500 * 119.99955 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.47175 * 324.99716 * 11 10 8 13 13 C 1.53006 * 109.46998 * 84.99585 * 11 10 8 14 14 C 1.52997 * 109.47204 * 204.99611 * 11 10 8 15 15 C 1.52996 * 109.46894 * 64.99698 * 14 11 10 16 16 C 1.53008 * 109.47120 * 180.02562 * 15 14 11 17 17 C 1.52997 * 109.47301 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.47230 * 179.97438 * 17 16 15 19 19 C 1.36939 * 120.00005 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00229 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99772 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00131 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99676 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47044 * 60.00643 * 23 21 19 25 25 H 1.48506 * 109.47073 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47388 * 300.00068 * 23 21 19 27 27 H 1.08991 * 109.47343 * 59.99577 * 1 2 3 28 28 H 1.08993 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46723 * 299.99862 * 1 2 3 30 30 H 1.09000 * 109.46994 * 240.00534 * 2 1 3 31 31 H 1.09001 * 109.47196 * 120.00251 * 2 1 3 32 32 H 1.08997 * 117.51525 * 145.03684 * 5 3 2 33 33 H 1.09005 * 117.51508 * 359.97438 * 5 3 2 34 34 H 0.96997 * 119.99935 * 359.97438 * 10 8 6 35 35 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 36 36 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 37 37 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 38 38 H 1.08994 * 109.47510 * 185.00146 * 14 11 10 39 39 H 1.09001 * 109.47096 * 305.00009 * 14 11 10 40 40 H 1.08998 * 109.47867 * 299.99927 * 15 14 11 41 41 H 1.08993 * 109.47122 * 60.00537 * 15 14 11 42 42 H 1.09003 * 109.46865 * 299.99902 * 16 15 14 43 43 H 1.09001 * 109.47171 * 60.00127 * 16 15 14 44 44 H 1.09004 * 109.46818 * 300.00154 * 17 16 15 45 45 H 1.09001 * 109.47187 * 59.99791 * 17 16 15 46 46 H 0.97005 * 119.99948 * 0.02562 * 18 17 16 47 47 H 0.97006 * 120.00247 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3884 2.1717 0.4815 5 6 2.8447 1.9076 -1.2162 6 6 3.5502 1.6579 0.1183 7 1 4.1803 0.7719 0.1966 8 6 4.0229 2.8620 0.8914 9 8 3.2159 3.6158 1.3929 10 7 5.3424 3.1012 1.0256 11 6 5.8019 4.2715 1.7777 12 1 5.1088 5.0983 1.6225 13 6 5.8617 3.9289 3.2677 14 6 7.1950 4.6756 1.2910 15 6 7.1124 5.1372 -0.1653 16 6 8.5056 5.5408 -0.6522 17 6 8.4230 6.0030 -2.1084 18 7 9.7568 6.3900 -2.5744 19 6 9.9306 6.8396 -3.8561 20 1 9.0842 6.9093 -4.5234 21 6 11.1946 7.2058 -4.2978 22 7 12.2261 7.1204 -3.4848 23 14 11.4315 7.8198 -6.0460 24 1 10.6104 9.0387 -6.2581 25 1 12.8640 8.1427 -6.2675 26 1 11.0087 6.7655 -7.0025 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.7225 2.9427 -1.5350 33 1 3.0110 1.1858 -2.0159 34 1 5.9878 2.4982 0.6249 35 1 6.2040 4.7994 3.8272 36 1 4.8693 3.6409 3.6143 37 1 6.5548 3.1021 3.4229 38 1 7.5739 5.4894 1.9092 39 1 7.8674 3.8208 1.3637 40 1 6.7336 4.3234 -0.7836 41 1 6.4401 5.9920 -0.2379 42 1 8.8849 6.3546 -0.0341 43 1 9.1777 4.6857 -0.5797 44 1 8.0435 5.1895 -2.7267 45 1 7.7510 6.8582 -2.1806 46 1 10.5171 6.3271 -1.9752 47 1 13.1094 7.3767 -3.7933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175348984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:58 Heat of formation + Delta-G solvation = -60.368119 kcal Electronic energy + Delta-G solvation = -21584.270197 eV Core-core repulsion = 18379.818324 eV Total energy + Delta-G solvation = -3204.451873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.15351 -38.66348 -37.63875 -36.73985 -34.77217 -33.18482 -32.72055 -31.56643 -28.83142 -26.15060 -25.58168 -24.61029 -23.58838 -22.06935 -21.80480 -21.46580 -20.99277 -19.13095 -18.30451 -17.36908 -16.69606 -16.30397 -16.12592 -15.78512 -15.38138 -15.34639 -15.18791 -15.09309 -14.58265 -14.18474 -14.06238 -13.52574 -13.41272 -13.24286 -13.05259 -12.98581 -12.89079 -12.84351 -12.46698 -12.29758 -12.20654 -12.17338 -11.92733 -11.89102 -11.83488 -11.50427 -11.41342 -11.22989 -11.02244 -10.93792 -10.72808 -10.06432 -9.02435 -7.96997 -5.26507 1.46135 1.49778 1.50376 1.56046 2.17929 2.54962 2.87372 3.35932 3.56470 3.68670 3.79479 3.87631 4.01379 4.04387 4.12436 4.21592 4.28378 4.33783 4.41303 4.48713 4.56891 4.59806 4.63391 4.77332 4.79377 4.86219 4.90840 4.94428 4.97158 4.98685 5.02241 5.12376 5.15609 5.22224 5.25075 5.29966 5.30238 5.44081 5.44862 5.49560 5.51752 5.60515 6.25647 6.58933 7.27876 7.31275 8.07860 8.31503 9.26326 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018907 B = 0.002542 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.598780 B =11012.591377 C =12218.903202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.122 4.122 4 H 0.092 0.908 5 C -0.143 4.143 6 C -0.193 4.193 7 H 0.149 0.851 8 C 0.537 3.463 9 O -0.589 6.589 10 N -0.709 5.709 11 C 0.142 3.858 12 H 0.064 0.936 13 C -0.157 4.157 14 C -0.116 4.116 15 C -0.104 4.104 16 C -0.112 4.112 17 C 0.148 3.852 18 N -0.749 5.749 19 C -0.252 4.252 20 H 0.073 0.927 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.977 3.023 24 H -0.278 1.278 25 H -0.293 1.293 26 H -0.276 1.276 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.414 0.586 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.018 0.982 45 H 0.012 0.988 46 H 0.374 0.626 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.309 -16.336 11.462 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.141 4.141 4 H 0.110 0.890 5 C -0.180 4.180 6 C -0.214 4.214 7 H 0.167 0.833 8 C 0.325 3.675 9 O -0.470 6.470 10 N -0.360 5.360 11 C 0.038 3.962 12 H 0.082 0.918 13 C -0.215 4.215 14 C -0.154 4.154 15 C -0.142 4.142 16 C -0.150 4.150 17 C 0.022 3.978 18 N -0.392 5.392 19 C -0.383 4.383 20 H 0.091 0.909 21 C -0.270 4.270 22 N -0.620 5.620 23 Si 0.805 3.195 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.202 1.202 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.146 0.854 34 H 0.251 0.749 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.036 0.964 45 H 0.030 0.970 46 H 0.206 0.794 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.916 -15.743 11.659 27.936 hybrid contribution 0.947 0.521 -0.807 1.349 sum -18.969 -15.222 10.851 26.632 Atomic orbital electron populations 1.21749 0.95096 1.02250 1.01732 1.21157 0.96354 0.92215 1.02993 1.22475 0.90925 0.99407 1.01276 0.88987 1.23180 1.01186 1.03087 0.90571 1.22398 0.98193 0.98613 1.02169 0.83296 1.20175 0.82399 0.85788 0.79129 1.90664 1.55167 1.50368 1.50794 1.46005 1.06767 1.28396 1.54838 1.20961 0.95809 0.87860 0.91574 0.91801 1.22110 1.01584 1.03009 0.94771 1.21835 0.95094 1.02779 0.95647 1.21415 0.95414 1.00969 0.96452 1.21597 0.98090 1.00864 0.94425 1.20853 0.86448 0.95987 0.94537 1.42625 1.05698 1.78853 1.12007 1.19621 0.93660 1.34800 0.90268 0.90891 1.25634 0.95487 1.03355 1.02486 1.69810 0.99273 1.55915 1.36955 0.85164 0.76356 0.78377 0.79578 1.20429 1.21861 1.20202 0.92653 0.91422 0.93337 0.90171 0.91060 0.89817 0.85439 0.74941 0.90566 0.94024 0.91022 0.89602 0.89666 0.91546 0.92840 0.92466 0.91768 0.96370 0.97027 0.79403 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.87 71.98 0.71 -0.93 16 2 C -0.09 -0.99 6.22 30.60 0.19 -0.80 16 3 C -0.12 -1.95 5.25 -10.77 -0.06 -2.00 16 4 H 0.09 1.95 7.60 -2.39 -0.02 1.93 16 5 C -0.14 -2.12 9.88 30.62 0.30 -1.82 16 6 C -0.19 -3.01 5.91 -11.54 -0.07 -3.08 16 7 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 8 C 0.54 11.87 7.58 87.66 0.66 12.53 16 9 O -0.59 -18.17 15.92 -3.03 -0.05 -18.22 16 10 N -0.71 -12.55 4.53 -442.54 -2.00 -14.56 16 11 C 0.14 2.72 2.57 44.99 0.12 2.84 16 12 H 0.06 1.56 7.58 -2.39 -0.02 1.54 16 13 C -0.16 -2.65 9.48 71.98 0.68 -1.97 16 14 C -0.12 -2.07 4.75 30.59 0.15 -1.93 16 15 C -0.10 -2.45 5.10 30.60 0.16 -2.30 16 16 C -0.11 -3.45 5.33 30.60 0.16 -3.29 16 17 C 0.15 6.08 6.26 86.38 0.54 6.62 16 18 N -0.75 -39.45 5.60 -343.46 -1.92 -41.38 16 19 C -0.25 -14.51 9.99 84.03 0.84 -13.67 16 20 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 21 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 22 N -0.97 -60.04 13.06 21.65 0.28 -59.75 16 23 Si 0.98 46.63 29.55 68.60 2.03 48.65 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.08 0.68 7.88 -2.39 -0.02 0.66 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.13 1.31 8.03 -2.38 -0.02 1.29 16 34 H 0.41 5.24 8.60 -92.71 -0.80 4.44 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.49 7.75 -2.39 -0.02 1.48 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.37 20.68 7.67 -92.70 -0.71 19.96 16 47 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -71.98 385.20 2.60 -69.38 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.59 Total: 29.75 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 4.85 Total: -13.87 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -3.65 Total: -115.69 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.05 Total: -18.22 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.98 2.60 -69.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175348984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.007 kcal (2) G-P(sol) polarization free energy of solvation -71.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds