Wall clock time and date at job start Tue Mar 31 2020 05:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47143 * 2 1 4 4 H 1.08999 * 115.54879 * 29.33175 * 3 2 1 5 5 C 1.53069 * 117.53386 * 243.61305 * 3 2 1 6 6 C 1.53000 * 59.98584 * 252.53081 * 5 3 2 7 7 H 1.09002 * 117.49833 * 107.50105 * 6 5 3 8 8 C 1.50697 * 117.50034 * 252.49893 * 6 5 3 9 9 O 1.21286 * 120.00074 * 68.74360 * 8 6 5 10 10 N 1.34775 * 120.00215 * 248.74477 * 8 6 5 11 11 C 1.46502 * 120.00324 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.46950 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.46737 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47257 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47471 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47269 * 179.97438 * 15 14 13 17 17 N 1.46502 * 109.47268 * 179.97438 * 16 15 14 18 18 C 1.36939 * 119.99873 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00461 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99825 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99710 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00092 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47031 * 60.00270 * 22 20 18 24 24 H 1.48502 * 109.47257 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47353 * 300.00604 * 22 20 18 26 26 H 1.08997 * 109.46940 * 299.99742 * 1 2 3 27 27 H 1.08999 * 109.46929 * 60.00197 * 1 2 3 28 28 H 1.08996 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46940 * 240.00258 * 2 1 3 30 30 H 1.08999 * 109.46929 * 119.99803 * 2 1 3 31 31 H 1.09008 * 117.49334 * 145.04636 * 5 3 2 32 32 H 1.08999 * 117.51639 * 0.02562 * 5 3 2 33 33 H 0.97007 * 119.99741 * 0.02562 * 10 8 6 34 34 H 1.08994 * 109.47023 * 300.00171 * 11 10 8 35 35 H 1.09000 * 109.46794 * 60.00305 * 11 10 8 36 36 H 1.08994 * 109.47298 * 299.99881 * 12 11 10 37 37 H 1.09000 * 109.47221 * 60.00445 * 12 11 10 38 38 H 1.09003 * 109.47442 * 299.99924 * 13 12 11 39 39 H 1.09005 * 109.47850 * 59.99826 * 13 12 11 40 40 H 1.09003 * 109.46750 * 300.00247 * 14 13 12 41 41 H 1.09004 * 109.46624 * 59.99615 * 14 13 12 42 42 H 1.08999 * 109.47157 * 300.00659 * 15 14 13 43 43 H 1.09000 * 109.46808 * 60.00075 * 15 14 13 44 44 H 1.09003 * 109.47374 * 300.00200 * 16 15 14 45 45 H 1.09000 * 109.46962 * 60.00392 * 16 15 14 46 46 H 0.96998 * 119.99925 * 0.02562 * 17 16 15 47 47 H 0.97003 * 119.99472 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8446 1.9085 -1.2159 6 6 3.5502 1.6579 0.1184 7 1 4.1804 0.7719 0.1958 8 6 4.0228 2.8614 0.8924 9 8 3.2158 3.6148 1.3945 10 7 5.3424 3.1005 1.0268 11 6 5.8019 4.2708 1.7789 12 6 7.3315 4.3088 1.7786 13 6 7.8113 5.5306 2.5645 14 6 9.3409 5.5690 2.5638 15 6 9.8208 6.7912 3.3492 16 6 11.3502 6.8292 3.3490 17 7 11.8097 7.9998 4.1005 18 6 13.1505 8.2428 4.2369 19 1 13.8692 7.5718 3.7901 20 6 13.5859 9.3517 4.9494 21 7 12.7100 10.1693 5.4943 22 14 15.4148 9.6837 5.1349 23 1 16.0249 9.8578 3.7923 24 1 15.6151 10.9198 5.9331 25 1 16.0583 8.5377 5.8261 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.7220 2.9440 -1.5337 32 1 3.0105 1.1876 -2.0164 33 1 5.9879 2.4982 0.6249 34 1 5.4162 5.1771 1.3120 35 1 5.4398 4.2083 2.8051 36 1 7.7175 3.4026 2.2452 37 1 7.6932 4.3715 0.7523 38 1 7.4253 6.4371 2.0983 39 1 7.4496 5.4676 3.5909 40 1 9.7273 4.6625 3.0298 41 1 9.7022 5.6323 1.5373 42 1 9.4343 7.6974 2.8829 43 1 9.4594 6.7283 4.3756 44 1 11.7363 5.9229 3.8156 45 1 11.7119 6.8919 2.3227 46 1 11.1643 8.6023 4.5021 47 1 13.0143 10.9440 5.9926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179642241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:52 Heat of formation + Delta-G solvation = -44.395007 kcal Electronic energy + Delta-G solvation = -20531.862289 eV Core-core repulsion = 17328.103062 eV Total energy + Delta-G solvation = -3203.759227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.34900 -37.73673 -36.67366 -35.36083 -33.93132 -32.54705 -31.84672 -30.00647 -27.25379 -25.06701 -24.24761 -23.49111 -22.16128 -21.31903 -20.92105 -20.64424 -20.15454 -17.59724 -16.96027 -16.33525 -16.23379 -15.42300 -15.17779 -14.90880 -14.67046 -14.43316 -14.18947 -13.47288 -13.40562 -13.12127 -12.94202 -12.79920 -12.71253 -12.57643 -12.34675 -11.79777 -11.72065 -11.50126 -11.35715 -11.18390 -10.90521 -10.76079 -10.71574 -10.70389 -10.50968 -10.43823 -10.24828 -10.11105 -9.94019 -9.62088 -9.37314 -8.82687 -6.87472 -5.72582 -3.01034 2.17431 2.78438 3.37973 3.46410 3.50199 3.51790 4.14084 4.29093 4.33839 4.54265 4.63687 4.69172 4.72333 4.76322 4.86776 4.94296 4.99260 5.19267 5.23811 5.30567 5.38735 5.40282 5.45448 5.52584 5.57046 5.62466 5.64793 5.68925 5.70966 5.74834 5.91716 5.95348 5.97085 6.13893 6.14750 6.35017 6.35665 6.43101 6.50002 6.93248 6.97311 7.17563 7.72602 7.92152 8.46812 9.57308 10.17082 10.51657 11.50481 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.078940 B = 0.001581 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.616255 B =17706.642688 C =17868.614473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.193 4.193 7 H 0.123 0.877 8 C 0.540 3.460 9 O -0.541 6.541 10 N -0.727 5.727 11 C 0.117 3.883 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.266 -22.112 -14.075 34.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.214 4.214 7 H 0.141 0.859 8 C 0.326 3.674 9 O -0.418 6.418 10 N -0.378 5.378 11 C -0.007 4.007 12 C -0.168 4.168 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.024 3.976 17 N -0.379 5.379 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.235 0.765 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.658 -21.555 -13.705 34.144 hybrid contribution 1.333 0.171 0.120 1.349 sum -21.325 -21.384 -13.585 33.115 Atomic orbital electron populations 1.21743 0.95074 1.01725 1.02231 1.21160 0.96401 0.93523 1.02169 1.22506 0.91256 0.98832 1.01014 0.86383 1.23124 1.01962 1.03245 0.90260 1.22317 0.97953 0.98931 1.02241 0.85900 1.19692 0.82256 0.85580 0.79825 1.90711 1.53966 1.48724 1.48407 1.45985 1.07003 1.28947 1.55860 1.21464 0.94694 0.87945 0.96556 1.21824 0.93367 1.00004 1.01617 1.21521 0.96527 0.97061 1.00340 1.21500 0.94105 0.98867 1.00649 1.21728 0.97259 0.97375 1.00102 1.20656 0.91196 0.90892 0.94809 1.42389 1.04902 1.27262 1.63362 1.19220 0.83685 1.06708 1.27539 0.91277 1.24750 0.97638 0.97841 1.00885 1.69659 1.32337 1.16212 1.40150 0.86252 0.85083 0.77227 0.77541 1.21288 1.21658 1.21283 0.92429 0.92487 0.92556 0.91627 0.91376 0.88254 0.87725 0.76466 0.91393 0.91349 0.91281 0.91272 0.91633 0.91620 0.92102 0.92106 0.92084 0.92091 0.96600 0.96603 0.78332 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.87 37.16 0.37 -0.35 16 2 C -0.10 -0.48 6.22 -26.73 -0.17 -0.64 16 3 C -0.12 -0.80 5.25 -90.58 -0.48 -1.28 16 4 H 0.12 1.03 7.60 -51.93 -0.39 0.64 16 5 C -0.15 -0.87 9.88 -26.70 -0.26 -1.13 16 6 C -0.19 -1.31 5.91 -91.77 -0.54 -1.86 16 7 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 8 C 0.54 5.39 7.61 -10.99 -0.08 5.31 16 9 O -0.54 -7.68 16.26 5.55 0.09 -7.59 16 10 N -0.73 -5.80 5.56 -60.29 -0.33 -6.14 16 11 C 0.12 1.06 5.67 -4.04 -0.02 1.03 16 12 C -0.13 -1.05 5.33 -26.73 -0.14 -1.19 16 13 C -0.12 -1.19 5.21 -26.73 -0.14 -1.33 16 14 C -0.11 -1.40 5.21 -26.73 -0.14 -1.54 16 15 C -0.13 -2.08 5.33 -26.74 -0.14 -2.23 16 16 C 0.15 3.18 6.26 -4.04 -0.03 3.15 16 17 N -0.74 -19.52 5.60 -59.91 -0.34 -19.85 16 18 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.99 13.06 55.49 0.72 -28.26 16 22 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.26 7.88 -51.93 -0.41 -0.14 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.10 0.42 8.04 -51.93 -0.42 0.00 16 33 H 0.40 2.08 8.47 -40.82 -0.35 1.74 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -33.98 386.95 -10.11 -44.08 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -9.04 Total: 3.87 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -2.02 Total: -9.74 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.05 Total: -54.26 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.09 Total: -7.59 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.98 -10.11 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179642241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.313 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds