Wall clock time and date at job start Tue Mar 31 2020 05:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52992 * 109.47497 * 2 1 4 4 H 1.09002 * 109.47041 * 304.99529 * 3 2 1 5 5 C 1.52993 * 109.47368 * 64.99965 * 3 2 1 6 6 C 1.53002 * 109.47570 * 184.99937 * 3 2 1 7 7 C 1.53000 * 109.47498 * 174.99703 * 6 3 2 8 8 C 1.50701 * 109.47008 * 180.02562 * 7 6 3 9 9 O 1.21278 * 120.00429 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99396 * 180.02562 * 8 7 6 11 11 C 1.47419 * 125.65221 * 359.97078 * 10 8 7 12 12 C 1.54905 * 104.92834 * 155.83963 * 11 10 8 13 13 C 1.55448 * 101.45165 * 37.00468 * 12 11 10 14 14 H 1.08997 * 110.85990 * 206.07553 * 13 12 11 15 15 N 1.46499 * 110.70397 * 82.89196 * 13 12 11 16 16 C 1.36941 * 120.00316 * 91.45713 * 15 13 12 17 17 H 1.08000 * 119.99609 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00277 * 179.97438 * 16 15 13 19 19 N 1.31627 * 119.99659 * 359.97438 * 18 16 15 20 20 Si 1.86789 * 120.00202 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47075 * 59.99945 * 20 18 16 22 22 H 1.48507 * 109.47532 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47511 * 299.99993 * 20 18 16 24 24 C 1.47026 * 125.64203 * 180.02562 * 10 8 7 25 25 H 1.08998 * 109.88266 * 300.45023 * 24 10 8 26 26 C 1.53003 * 109.88420 * 61.46754 * 24 10 8 27 27 H 1.09000 * 109.47126 * 300.00522 * 1 2 3 28 28 H 1.08999 * 109.47174 * 60.00007 * 1 2 3 29 29 H 1.09002 * 109.47180 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47126 * 239.99478 * 2 1 3 31 31 H 1.09009 * 109.47150 * 119.99846 * 2 1 3 32 32 H 1.08999 * 109.47238 * 299.99873 * 5 3 2 33 33 H 1.08999 * 109.47739 * 60.00179 * 5 3 2 34 34 H 1.09002 * 109.47254 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.46707 * 54.99577 * 6 3 2 36 36 H 1.08994 * 109.47119 * 295.00053 * 6 3 2 37 37 H 1.08991 * 109.47039 * 59.99801 * 7 6 3 38 38 H 1.09002 * 109.46656 * 300.00027 * 7 6 3 39 39 H 1.09002 * 110.36926 * 274.73432 * 11 10 8 40 40 H 1.08995 * 110.36556 * 36.94716 * 11 10 8 41 41 H 1.09002 * 111.00852 * 155.13877 * 12 11 10 42 42 H 1.09004 * 111.00578 * 278.99532 * 12 11 10 43 43 H 0.97000 * 119.99724 * 271.44710 * 15 13 12 44 44 H 0.96997 * 119.99726 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.47418 * 58.54356 * 26 24 10 46 46 H 1.08999 * 109.46831 * 178.54506 * 26 24 10 47 47 H 1.09004 * 109.46664 * 298.54364 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2512 8 6 5.5664 2.8865 -0.3756 9 8 6.1770 1.8387 -0.3655 10 7 6.2311 4.0526 -0.4982 11 6 5.6173 5.3927 -0.5256 12 6 6.7380 6.3545 -0.0581 13 6 7.9915 5.7094 -0.7131 14 1 8.8926 5.9544 -0.1510 15 7 8.1225 6.1334 -2.1093 16 6 8.8644 7.2411 -2.4219 17 1 9.3527 7.8024 -1.6390 18 6 8.9890 7.6425 -3.7448 19 7 8.3942 6.9580 -4.6989 20 14 10.0004 9.1538 -4.1710 21 1 11.4022 8.9537 -3.7234 22 1 9.9763 9.3675 -5.6405 23 1 9.4276 10.3417 -3.4882 24 6 7.6883 4.1987 -0.6278 25 1 8.1828 3.7702 0.2439 26 6 8.1709 3.4951 -1.8979 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.5490 2.1253 1.3968 33 1 2.0699 1.5875 2.1492 34 1 1.9983 3.1543 1.3071 35 1 3.8570 0.8799 -1.0113 36 1 4.0029 0.9835 0.7596 37 1 3.7724 3.4492 0.6343 38 1 3.6264 3.3455 -1.1366 39 1 5.2996 5.6438 -1.5376 40 1 4.7703 5.4360 0.1589 41 1 6.5714 7.3626 -0.4379 42 1 6.8226 6.3571 1.0286 43 1 7.6837 5.6293 -2.8124 44 1 8.4815 7.2383 -5.6234 45 1 7.6668 3.9231 -2.7643 46 1 9.2476 3.6294 -2.0009 47 1 7.9420 2.4313 -1.8332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179775129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:54 Heat of formation + Delta-G solvation = -47.703234 kcal Electronic energy + Delta-G solvation = -22962.321042 eV Core-core repulsion = 19758.418359 eV Total energy + Delta-G solvation = -3203.902683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.95585 -37.88992 -36.88321 -33.95980 -32.50455 -31.42931 -30.74063 -29.24874 -28.41539 -25.91990 -25.18374 -23.61645 -23.05170 -21.72672 -20.04883 -19.51641 -18.37445 -17.51501 -16.62915 -16.12548 -15.55006 -15.22191 -14.69074 -14.27612 -14.17542 -13.78498 -13.67281 -13.38976 -13.21790 -12.83173 -12.62549 -12.49914 -12.23360 -12.13467 -11.86813 -11.76247 -11.62173 -11.27032 -11.07231 -10.98641 -10.92760 -10.76479 -10.70041 -10.66093 -10.60357 -10.54765 -10.24242 -10.06235 -9.62283 -9.37050 -8.96195 -8.24774 -7.03684 -5.82649 -3.12203 2.95123 3.33113 3.40456 3.45470 3.46223 4.52260 4.53929 4.65469 4.70544 4.92003 5.06864 5.10537 5.17615 5.24525 5.33092 5.37755 5.38626 5.46896 5.55753 5.60585 5.62545 5.66743 5.75098 5.78095 5.82049 5.86066 5.89846 5.92586 5.94774 6.02431 6.09828 6.17184 6.27400 6.33645 6.37413 6.43886 6.53362 6.64046 6.76001 6.90653 7.04722 7.64843 7.93106 8.35728 8.50779 9.47218 10.02725 10.37838 11.39542 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030645 B = 0.003168 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.466575 B = 8835.970921 C = 8916.800200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.070 0.930 5 C -0.151 4.151 6 C -0.098 4.098 7 C -0.137 4.137 8 C 0.524 3.476 9 O -0.550 6.550 10 N -0.610 5.610 11 C 0.105 3.895 12 C -0.160 4.160 13 C 0.171 3.829 14 H 0.069 0.931 15 N -0.713 5.713 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C 0.125 3.875 25 H 0.068 0.932 26 C -0.148 4.148 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.388 0.612 44 H 0.256 0.744 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.588 -8.634 11.251 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.112 4.112 4 H 0.089 0.911 5 C -0.208 4.208 6 C -0.136 4.136 7 C -0.177 4.177 8 C 0.313 3.687 9 O -0.428 6.428 10 N -0.343 5.343 11 C -0.017 4.017 12 C -0.201 4.201 13 C 0.059 3.941 14 H 0.087 0.913 15 N -0.355 5.355 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.022 3.978 25 H 0.086 0.914 26 C -0.206 4.206 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.225 0.775 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.182 -9.109 11.207 19.554 hybrid contribution 0.329 0.892 -0.577 1.112 sum -12.854 -8.217 10.630 18.594 Atomic orbital electron populations 1.21826 0.96074 1.01363 1.01826 1.21560 0.95636 0.96412 1.02122 1.21205 0.95427 0.96194 0.98419 0.91145 1.21945 1.01086 1.00554 0.97223 1.21384 0.93909 0.94959 1.03313 1.21711 0.92281 0.99734 1.03960 1.20319 0.89759 0.82360 0.76265 1.90655 1.70002 1.30853 1.51303 1.48708 1.08181 1.05998 1.71457 1.22274 0.96347 0.81906 1.01203 1.23560 0.97557 0.99704 0.99290 1.21250 0.95341 0.89107 0.88375 0.91288 1.42547 1.60109 1.32051 1.00823 1.19200 1.23507 1.02856 0.91965 0.91093 1.24747 1.00830 0.99329 0.95738 1.69654 1.47614 1.40947 0.99651 0.86264 0.80026 0.82739 0.77084 1.21240 1.21741 1.21261 1.21986 0.79750 0.97745 0.98353 0.91413 1.21904 1.01782 0.99573 0.97351 0.92579 0.92810 0.93028 0.91936 0.92027 0.92654 0.92733 0.92529 0.91238 0.91341 0.89182 0.89196 0.91135 0.91837 0.89471 0.92118 0.77542 0.93368 0.91654 0.91631 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.15 0.36 -0.74 16 2 C -0.12 -0.99 5.40 -26.74 -0.14 -1.14 16 3 C -0.09 -0.83 2.39 -90.63 -0.22 -1.04 16 4 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 5 C -0.15 -1.20 8.70 37.15 0.32 -0.87 16 6 C -0.10 -1.09 3.97 -26.73 -0.11 -1.19 16 7 C -0.14 -1.61 4.46 -27.88 -0.12 -1.74 16 8 C 0.52 8.45 7.64 -10.98 -0.08 8.36 16 9 O -0.55 -10.60 15.01 5.56 0.08 -10.52 16 10 N -0.61 -9.95 3.07 -163.02 -0.50 -10.45 16 11 C 0.11 1.56 6.66 -2.53 -0.02 1.54 16 12 C -0.16 -2.55 6.79 -24.43 -0.17 -2.72 16 13 C 0.17 3.25 3.49 -65.94 -0.23 3.02 16 14 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 15 N -0.71 -16.84 4.55 -51.50 -0.23 -17.08 16 16 C -0.24 -6.44 9.96 -15.06 -0.15 -6.59 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 20 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.13 2.25 3.42 -66.95 -0.23 2.02 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 C -0.15 -2.88 8.52 37.16 0.32 -2.57 16 27 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.05 0.39 6.57 -51.93 -0.34 0.05 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 35 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.09 0.91 6.27 -51.93 -0.33 0.58 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.75 7.47 -51.93 -0.39 0.36 16 41 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.39 9.89 5.68 -40.82 -0.23 9.65 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.06 1.40 6.21 -51.93 -0.32 1.08 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.05 1.06 6.87 -51.93 -0.36 0.70 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -29.86 363.47 -8.56 -38.42 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.53 Total: 8.00 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.56 Total: -4.03 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.01 Total: -54.09 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.86 -8.56 -38.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179775129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.279 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds