Wall clock time and date at job start Tue Mar 31 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47015 * 2 1 4 4 H 1.08999 * 109.47593 * 54.99802 * 3 2 1 5 5 C 1.53009 * 109.47313 * 294.99961 * 3 2 1 6 6 C 1.53002 * 109.47260 * 175.00048 * 3 2 1 7 7 C 1.53000 * 109.47498 * 184.99769 * 6 3 2 8 8 C 1.50701 * 109.47008 * 180.02562 * 7 6 3 9 9 O 1.21278 * 120.00429 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99396 * 180.02562 * 8 7 6 11 11 C 1.47419 * 125.65221 * 359.97078 * 10 8 7 12 12 C 1.54905 * 104.92834 * 155.83963 * 11 10 8 13 13 C 1.55448 * 101.45165 * 37.00468 * 12 11 10 14 14 H 1.08997 * 110.85990 * 206.07553 * 13 12 11 15 15 N 1.46499 * 110.70397 * 82.89196 * 13 12 11 16 16 C 1.36941 * 120.00316 * 91.45713 * 15 13 12 17 17 H 1.08000 * 119.99609 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00277 * 179.97438 * 16 15 13 19 19 N 1.31627 * 119.99659 * 359.97438 * 18 16 15 20 20 Si 1.86789 * 120.00202 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47075 * 59.99945 * 20 18 16 22 22 H 1.48507 * 109.47532 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47511 * 299.99993 * 20 18 16 24 24 C 1.47026 * 125.64203 * 180.02562 * 10 8 7 25 25 H 1.08998 * 109.88266 * 300.45023 * 24 10 8 26 26 C 1.53003 * 109.88420 * 61.46754 * 24 10 8 27 27 H 1.08997 * 109.46929 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46628 * 300.00318 * 1 2 3 29 29 H 1.09002 * 109.47102 * 59.99671 * 1 2 3 30 30 H 1.08997 * 109.46839 * 240.00043 * 2 1 3 31 31 H 1.09000 * 109.47215 * 119.99789 * 2 1 3 32 32 H 1.08999 * 109.46661 * 300.00411 * 5 3 2 33 33 H 1.09001 * 109.46917 * 60.00100 * 5 3 2 34 34 H 1.08996 * 109.47235 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.46707 * 64.99643 * 6 3 2 36 36 H 1.08994 * 109.47119 * 305.00119 * 6 3 2 37 37 H 1.08991 * 109.47039 * 59.99801 * 7 6 3 38 38 H 1.09002 * 109.46656 * 300.00027 * 7 6 3 39 39 H 1.09002 * 110.36926 * 274.73432 * 11 10 8 40 40 H 1.08995 * 110.36556 * 36.94716 * 11 10 8 41 41 H 1.09002 * 111.00852 * 155.13877 * 12 11 10 42 42 H 1.09004 * 111.00578 * 278.99532 * 12 11 10 43 43 H 0.97000 * 119.99724 * 271.44710 * 15 13 12 44 44 H 0.96997 * 119.99726 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.47418 * 58.54356 * 26 24 10 46 46 H 1.08999 * 109.46831 * 178.54506 * 26 24 10 47 47 H 1.09004 * 109.46664 * 298.54364 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0645 2.8850 0.2511 8 6 5.5665 2.8868 0.3742 9 8 6.1772 1.8391 0.3624 10 7 6.2310 4.0529 0.4975 11 6 5.6172 5.3929 0.5257 12 6 6.6374 6.2834 1.2779 13 6 7.9870 5.7066 0.7658 14 1 8.7820 5.8763 1.4919 15 7 8.3398 6.2881 -0.5317 16 6 9.1122 7.4174 -0.5887 17 1 9.4609 7.8797 0.3230 18 6 9.4470 7.9681 -1.8181 19 7 9.0223 7.4044 -2.9292 20 14 10.4999 9.5089 -1.8958 21 1 11.8118 9.2450 -1.2518 22 1 10.7137 9.8915 -3.3148 23 1 9.8121 10.6151 -1.1827 24 6 7.6885 4.1991 0.6251 25 1 8.0383 3.6679 1.5102 26 6 8.3784 3.6427 -0.6221 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1253 -1.3970 34 1 1.9989 3.1541 -1.3076 35 1 4.0029 0.9836 -0.7597 36 1 3.8571 0.8801 1.0112 37 1 3.6264 3.3458 1.1363 38 1 3.7723 3.4492 -0.6346 39 1 5.4663 5.7625 -0.4885 40 1 4.6695 5.3647 1.0633 41 1 6.5253 7.3302 0.9953 42 1 6.5436 6.1593 2.3568 43 1 8.0264 5.8730 -1.3505 44 1 9.2565 7.7889 -3.7883 45 1 8.0183 4.1730 -1.5037 46 1 9.4562 3.7779 -0.5319 47 1 8.1522 2.5808 -0.7192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179775132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:57 Heat of formation + Delta-G solvation = -47.701112 kcal Electronic energy + Delta-G solvation = -22979.857546 eV Core-core repulsion = 19775.954955 eV Total energy + Delta-G solvation = -3203.902591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.95539 -37.88680 -36.87865 -33.95984 -32.50462 -31.42940 -30.74111 -29.24106 -28.40453 -25.90812 -25.18368 -23.61575 -23.05229 -21.72678 -20.04310 -19.51952 -18.37735 -17.50832 -16.59593 -16.14203 -15.64602 -15.00357 -14.82652 -14.38347 -14.02267 -13.75567 -13.73138 -13.38074 -13.20213 -12.83189 -12.65697 -12.44920 -12.23790 -12.11494 -11.86463 -11.77426 -11.60641 -11.27808 -11.04734 -10.98729 -10.94510 -10.76295 -10.69136 -10.64692 -10.62338 -10.53055 -10.24300 -10.06291 -9.62303 -9.37045 -8.96202 -8.24770 -7.03688 -5.82663 -3.12210 2.95125 3.33112 3.40441 3.45461 3.46203 4.52485 4.53923 4.66008 4.71179 4.91702 5.07643 5.10538 5.17353 5.26718 5.33980 5.37622 5.39825 5.46988 5.55653 5.60635 5.63181 5.67185 5.75380 5.78208 5.83897 5.86726 5.89482 5.94588 5.96527 6.02292 6.09703 6.17292 6.28609 6.33912 6.37725 6.43891 6.53370 6.64048 6.76001 6.90650 7.04699 7.64838 7.93109 8.35713 8.50780 9.47207 10.02708 10.37827 11.39526 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030057 B = 0.003228 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.341589 B = 8672.293541 C = 8906.344648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.152 4.152 6 C -0.098 4.098 7 C -0.137 4.137 8 C 0.524 3.476 9 O -0.550 6.550 10 N -0.610 5.610 11 C 0.105 3.895 12 C -0.160 4.160 13 C 0.171 3.829 14 H 0.069 0.931 15 N -0.713 5.713 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C 0.125 3.875 25 H 0.068 0.932 26 C -0.148 4.148 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.388 0.612 44 H 0.256 0.744 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.110 -9.714 7.249 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.111 4.111 4 H 0.087 0.913 5 C -0.209 4.209 6 C -0.136 4.136 7 C -0.177 4.177 8 C 0.313 3.687 9 O -0.428 6.428 10 N -0.343 5.343 11 C -0.017 4.017 12 C -0.201 4.201 13 C 0.059 3.941 14 H 0.087 0.913 15 N -0.355 5.355 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.022 3.978 25 H 0.086 0.914 26 C -0.206 4.206 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.225 0.775 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.697 -10.185 7.214 19.282 hybrid contribution 0.410 0.949 -0.400 1.109 sum -14.288 -9.236 6.814 18.326 Atomic orbital electron populations 1.21828 0.96080 1.01351 1.01823 1.21563 0.95629 0.96432 1.02114 1.21202 0.95382 0.96148 0.98419 0.91286 1.21958 1.01065 1.00705 0.97216 1.21387 0.93944 0.94933 1.03318 1.21712 0.92244 0.99772 1.03961 1.20319 0.89774 0.82361 0.76249 1.90655 1.70038 1.30926 1.51195 1.48708 1.08091 1.05966 1.71579 1.22275 0.96302 0.82150 1.01011 1.23560 0.98047 1.00297 0.98204 1.21250 0.94009 0.88541 0.90273 0.91289 1.42546 1.60804 1.30587 1.01590 1.19200 1.23921 1.01949 0.92451 0.91094 1.24746 1.01098 0.99442 0.95359 1.69654 1.49750 1.41624 0.96839 0.86264 0.80313 0.83015 0.76522 1.21241 1.21742 1.21262 1.21986 0.79403 0.97910 0.98536 0.91414 1.21904 1.00717 1.00195 0.97791 0.93034 0.92892 0.92505 0.91949 0.92026 0.92614 0.92656 0.92415 0.91205 0.91378 0.89424 0.88953 0.91143 0.91822 0.89472 0.92117 0.77543 0.93370 0.91655 0.91633 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.67 37.16 0.36 -0.73 16 2 C -0.12 -0.99 5.40 -26.73 -0.14 -1.13 16 3 C -0.09 -0.82 2.39 -90.62 -0.22 -1.04 16 4 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 5 C -0.15 -1.30 8.70 37.16 0.32 -0.98 16 6 C -0.10 -1.09 3.97 -26.73 -0.11 -1.20 16 7 C -0.14 -1.61 4.46 -27.88 -0.12 -1.74 16 8 C 0.52 8.45 7.64 -10.98 -0.08 8.36 16 9 O -0.55 -10.60 15.01 5.56 0.08 -10.52 16 10 N -0.61 -9.95 3.07 -163.02 -0.50 -10.45 16 11 C 0.11 1.56 6.66 -2.53 -0.02 1.54 16 12 C -0.16 -2.55 6.79 -24.43 -0.17 -2.72 16 13 C 0.17 3.25 3.49 -65.94 -0.23 3.02 16 14 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 15 N -0.71 -16.83 4.55 -51.50 -0.23 -17.07 16 16 C -0.24 -6.43 9.96 -15.06 -0.15 -6.58 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 20 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.13 2.25 3.42 -66.95 -0.23 2.02 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 C -0.15 -2.88 8.52 37.16 0.32 -2.56 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.42 6.56 -51.93 -0.34 0.08 16 34 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 35 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.09 0.88 7.84 -51.93 -0.41 0.47 16 38 H 0.09 1.02 6.56 -51.93 -0.34 0.68 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.75 7.47 -51.93 -0.39 0.36 16 41 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.39 9.88 5.68 -40.82 -0.23 9.65 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.06 1.40 6.21 -51.93 -0.32 1.08 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.05 1.06 6.87 -51.93 -0.36 0.70 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -29.84 363.47 -8.56 -38.41 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -8.53 Total: 8.08 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -0.56 Total: -4.11 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.01 Total: -54.07 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.84 -8.56 -38.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179775132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.293 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds