Wall clock time and date at job start Tue Mar 31 2020 05:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09004 * 109.47066 * 54.99931 * 3 2 1 5 5 C 1.53000 * 109.47166 * 294.99927 * 3 2 1 6 6 C 1.50702 * 109.47159 * 174.99728 * 3 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 3 2 9 9 C 1.48144 * 127.84017 * 359.96351 * 8 6 3 10 10 C 1.54787 * 104.42259 * 140.36092 * 9 8 6 11 11 H 1.09004 * 110.20080 * 142.94000 * 10 9 8 12 12 C 1.52995 * 110.61947 * 265.17847 * 10 9 8 13 13 C 1.54288 * 104.91816 * 24.16831 * 10 9 8 14 14 C 1.52998 * 110.42944 * 240.88986 * 13 10 9 15 15 C 1.52999 * 110.34368 * 118.67852 * 13 10 9 16 16 N 1.46498 * 109.46789 * 183.00886 * 15 13 10 17 17 C 1.36947 * 119.99925 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99811 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00007 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00011 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46916 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47329 * 120.00016 * 21 19 17 24 24 H 1.48505 * 109.47434 * 240.00387 * 21 19 17 25 25 C 1.48145 * 127.83833 * 180.27304 * 8 6 3 26 26 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47103 * 299.99907 * 1 2 3 28 28 H 1.09001 * 109.47091 * 60.00619 * 1 2 3 29 29 H 1.09005 * 109.47761 * 239.99871 * 2 1 3 30 30 H 1.09000 * 109.47436 * 120.00075 * 2 1 3 31 31 H 1.08996 * 109.46783 * 299.99412 * 5 3 2 32 32 H 1.08994 * 109.47175 * 59.99981 * 5 3 2 33 33 H 1.09001 * 109.46739 * 179.97438 * 5 3 2 34 34 H 1.09005 * 110.40649 * 259.20040 * 9 8 6 35 35 H 1.08999 * 110.40810 * 21.62203 * 9 8 6 36 36 H 1.08992 * 109.47473 * 175.64428 * 12 10 9 37 37 H 1.09001 * 109.46855 * 295.64971 * 12 10 9 38 38 H 1.09004 * 109.46825 * 55.64662 * 12 10 9 39 39 H 1.08996 * 109.47299 * 177.04050 * 14 13 10 40 40 H 1.08994 * 109.47308 * 297.04125 * 14 13 10 41 41 H 1.09001 * 109.47125 * 57.04278 * 14 13 10 42 42 H 1.09003 * 109.46987 * 303.00368 * 15 13 10 43 43 H 1.08997 * 109.47442 * 63.01091 * 15 13 10 44 44 H 0.96998 * 120.00289 * 0.02562 * 16 15 13 45 45 H 0.96999 * 119.99793 * 180.02562 * 20 19 17 46 46 H 1.09001 * 110.41244 * 338.38003 * 25 8 6 47 47 H 1.09003 * 110.40314 * 100.80546 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1451 0.3951 0.2038 8 7 4.2153 2.6116 0.1398 9 6 3.6607 3.9821 0.0466 10 6 4.5033 4.8080 1.0485 11 1 4.6809 5.8091 0.6554 12 6 3.8016 4.8873 2.4057 13 6 5.8344 4.0384 1.1769 14 6 6.0517 3.5848 2.6219 15 6 7.0013 4.9130 0.7139 16 7 8.2447 4.1409 0.7758 17 6 9.4294 4.7198 0.4059 18 1 9.4469 5.7457 0.0688 19 6 10.6077 3.9884 0.4651 20 7 10.5863 2.7383 0.8764 21 14 12.2236 4.7783 -0.0389 22 1 11.9789 6.1815 -0.4589 23 1 13.1622 4.7631 1.1118 24 1 12.8146 4.0186 -1.1698 25 6 5.6787 2.8151 0.2480 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0699 1.5875 -2.1491 32 1 0.5490 2.1252 -1.3969 33 1 1.9982 3.1543 -1.3071 34 1 3.7782 4.3718 -0.9646 35 1 2.6101 3.9875 0.3371 36 1 4.4445 5.4053 3.1174 37 1 2.8642 5.4331 2.2987 38 1 3.5963 3.8800 2.7679 39 1 6.9685 2.9987 2.6848 40 1 6.1339 4.4583 3.2685 41 1 5.2074 2.9741 2.9418 42 1 6.8266 5.2387 -0.3116 43 1 7.0821 5.7846 1.3632 44 1 8.2289 3.2194 1.0782 45 1 11.4098 2.2273 0.9181 46 1 6.1527 1.9390 0.6906 47 1 6.1067 3.0253 -0.7322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180633202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:25 Heat of formation + Delta-G solvation = -39.435377 kcal Electronic energy + Delta-G solvation = -23655.956009 eV Core-core repulsion = 20452.411847 eV Total energy + Delta-G solvation = -3203.544161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.43470 -38.50844 -35.47387 -34.77829 -33.10112 -31.48288 -30.17602 -29.40799 -27.38404 -25.83473 -25.52041 -24.93363 -23.23389 -21.52239 -20.89242 -19.06561 -18.41337 -17.27088 -16.72110 -15.96000 -15.49695 -15.28052 -14.49583 -14.31201 -14.11734 -13.85800 -13.67805 -13.46986 -13.13516 -12.99280 -12.76764 -12.57832 -12.29686 -12.27262 -12.02497 -11.78643 -11.57893 -11.46340 -11.26448 -11.21629 -10.98653 -10.95302 -10.83097 -10.80808 -10.38071 -10.29042 -10.15493 -9.85601 -9.61688 -9.52433 -8.86376 -8.50429 -6.89572 -5.73813 -3.02731 2.77920 3.09203 3.44907 3.50142 3.52728 4.39108 4.57011 4.59109 4.64408 4.75972 4.84304 4.92969 5.12465 5.17531 5.29071 5.33912 5.38259 5.43977 5.47057 5.52699 5.58100 5.60732 5.66273 5.70524 5.78781 5.83762 5.88984 5.92714 6.01413 6.08155 6.11833 6.13289 6.19278 6.23550 6.26574 6.31215 6.46698 6.62868 6.70691 6.79438 6.88884 7.72331 7.74658 8.32366 8.44652 9.55996 10.13698 10.48071 11.48881 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025347 B = 0.003924 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.389376 B = 7133.062575 C = 7642.406791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.106 4.106 4 H 0.093 0.907 5 C -0.151 4.151 6 C 0.533 3.467 7 O -0.541 6.541 8 N -0.619 5.619 9 C 0.104 3.896 10 C -0.099 4.099 11 H 0.087 0.913 12 C -0.141 4.141 13 C -0.075 4.075 14 C -0.131 4.131 15 C 0.168 3.832 16 N -0.731 5.731 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.119 3.881 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.020 0.980 43 H 0.022 0.978 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.084 0.916 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.389 1.911 -0.566 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.127 4.127 4 H 0.111 0.889 5 C -0.208 4.208 6 C 0.322 3.678 7 O -0.418 6.418 8 N -0.353 5.353 9 C -0.019 4.019 10 C -0.118 4.118 11 H 0.105 0.895 12 C -0.198 4.198 13 C -0.076 4.076 14 C -0.188 4.188 15 C 0.040 3.960 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.003 4.003 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.999 1.354 -0.586 22.048 hybrid contribution 1.050 0.223 -0.196 1.092 sum -20.948 1.576 -0.782 21.022 Atomic orbital electron populations 1.21838 0.95601 1.01787 1.01736 1.21342 0.95141 0.94308 1.03575 1.21282 0.91947 0.99144 1.00334 0.88888 1.21953 1.01987 1.00856 0.95998 1.20277 0.89430 0.82105 0.76018 1.90718 1.70291 1.30585 1.50232 1.49031 1.08830 1.05300 1.72133 1.22637 0.97919 0.81956 0.99394 1.22221 0.94667 0.99213 0.95740 0.89484 1.21894 0.99548 1.01756 0.96633 1.21696 0.94618 0.95043 0.96242 1.21851 1.01554 1.00971 0.94428 1.20710 0.85226 0.92994 0.97027 1.42404 1.01765 1.13464 1.79923 1.19249 0.85253 0.96268 1.36302 0.91200 1.24740 0.97795 0.96123 1.02286 1.69672 1.26691 1.08310 1.53291 0.86136 0.84214 0.78222 0.77716 1.20613 1.21930 1.21910 1.22463 0.79386 0.98439 1.00026 0.92539 0.92792 0.92502 0.91319 0.91130 0.92113 0.91401 0.91650 0.90980 0.90392 0.91852 0.93212 0.92482 0.91617 0.92529 0.93393 0.96275 0.96018 0.78064 0.93548 0.89777 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 37.16 0.36 -0.79 16 2 C -0.11 -1.10 4.75 -26.73 -0.13 -1.23 16 3 C -0.11 -1.11 2.06 -91.77 -0.19 -1.30 16 4 H 0.09 0.84 7.96 -51.93 -0.41 0.42 16 5 C -0.15 -1.28 8.70 37.16 0.32 -0.96 16 6 C 0.53 8.00 7.27 -10.98 -0.08 7.92 16 7 O -0.54 -10.52 16.19 5.55 0.09 -10.43 16 8 N -0.62 -8.81 3.30 -169.06 -0.56 -9.37 16 9 C 0.10 1.12 4.82 -2.20 -0.01 1.11 16 10 C -0.10 -1.16 3.30 -89.01 -0.29 -1.46 16 11 H 0.09 0.96 7.71 -51.93 -0.40 0.56 16 12 C -0.14 -1.46 7.95 37.16 0.30 -1.16 16 13 C -0.07 -1.18 0.73 -153.11 -0.11 -1.29 16 14 C -0.13 -2.11 7.08 37.16 0.26 -1.85 16 15 C 0.17 3.26 4.85 -4.04 -0.02 3.24 16 16 N -0.73 -18.18 5.12 -59.91 -0.31 -18.49 16 17 C -0.24 -6.67 9.99 -15.05 -0.15 -6.82 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 21 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 C 0.12 2.04 5.54 -2.41 -0.01 2.03 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.83 7.96 -51.93 -0.41 0.42 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.45 6.56 -51.93 -0.34 0.11 16 33 H 0.06 0.52 5.31 -51.93 -0.28 0.24 16 34 H 0.07 0.72 8.01 -51.93 -0.42 0.30 16 35 H 0.08 0.66 6.29 -51.93 -0.33 0.33 16 36 H 0.06 0.68 6.89 -51.93 -0.36 0.32 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.63 6.73 -51.93 -0.35 0.28 16 39 H 0.06 1.26 6.99 -51.93 -0.36 0.89 16 40 H 0.06 0.86 6.98 -51.93 -0.36 0.50 16 41 H 0.05 0.72 6.63 -51.93 -0.34 0.37 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.38 10.19 6.27 -40.82 -0.26 9.93 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.08 1.68 7.60 -51.93 -0.39 1.29 16 47 H 0.08 1.42 7.86 -51.93 -0.41 1.01 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -32.41 356.22 -7.83 -40.24 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.27 Total: 5.89 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 0.15 Total: -3.03 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.14 Total: -55.57 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.41 -7.83 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180633202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.802 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds