Wall clock time and date at job start Tue Mar 31 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 N 1.46499 * 109.46437 * 65.00436 * 3 2 1 14 14 C 1.34776 * 120.00348 * 274.99648 * 13 3 2 15 15 O 1.21596 * 119.99701 * 0.02562 * 14 13 3 16 16 N 1.34768 * 120.00584 * 180.02562 * 14 13 3 17 17 C 1.46500 * 120.00569 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.46992 * 34.99479 * 17 16 14 19 19 C 1.53001 * 109.47074 * 275.00049 * 17 16 14 20 20 C 1.53004 * 109.47410 * 154.99680 * 17 16 14 21 21 C 1.53002 * 109.47068 * 299.99924 * 20 17 16 22 22 C 1.52996 * 109.47165 * 179.97438 * 21 20 17 23 23 C 1.53007 * 109.46720 * 60.00351 * 22 21 20 24 24 C 1.53002 * 109.47015 * 299.99740 * 23 22 21 25 25 C 1.52998 * 109.46801 * 180.02562 * 20 17 16 26 26 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 27 27 H 1.09007 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 29 29 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 30 30 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99954 * 95.00750 * 13 3 2 33 33 H 0.97003 * 120.00149 * 359.97438 * 16 14 13 34 34 H 1.08996 * 109.47496 * 59.99881 * 19 17 16 35 35 H 1.09006 * 109.47145 * 179.97438 * 19 17 16 36 36 H 1.09003 * 109.46746 * 299.99580 * 19 17 16 37 37 H 1.08993 * 109.47081 * 59.99984 * 20 17 16 38 38 H 1.09001 * 109.47141 * 300.00616 * 21 20 17 39 39 H 1.09006 * 109.47014 * 59.99846 * 21 20 17 40 40 H 1.08995 * 109.46971 * 300.00681 * 22 21 20 41 41 H 1.09002 * 109.47326 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.46977 * 179.97438 * 23 22 21 43 43 H 1.08993 * 109.47376 * 59.99948 * 23 22 21 44 44 H 1.09003 * 109.47112 * 300.00215 * 24 23 22 45 45 H 1.08994 * 109.46694 * 180.02562 * 24 23 22 46 46 H 1.08992 * 109.47305 * 299.99494 * 25 20 17 47 47 H 1.09005 * 109.47165 * 60.00392 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.6013 0.1572 -0.2444 11 1 6.3968 0.2332 -2.6593 12 1 6.4945 2.2945 -1.3852 13 7 1.6525 2.0973 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3416 2.6318 0.4323 16 7 0.0788 3.2671 2.5187 17 6 -1.2446 3.8828 2.6442 18 1 -1.9732 3.2951 2.0857 19 6 -1.2002 5.3059 2.0840 20 6 -1.6484 3.9277 4.1193 21 6 -1.6929 2.5046 4.6794 22 6 -2.0961 2.5496 6.1546 23 6 -3.4781 3.1928 6.2861 24 6 -3.4337 4.6159 5.7260 25 6 -3.0308 4.5702 4.2502 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.8287 -0.0519 -2.9548 32 1 2.2720 2.1230 1.9978 33 1 0.6983 3.2927 3.2647 34 1 -0.9125 5.2739 1.0331 35 1 -2.1850 5.7639 2.1770 36 1 -0.4715 5.8936 2.6425 37 1 -0.9199 4.5154 4.6777 38 1 -2.4214 1.9169 4.1209 39 1 -0.7082 2.0465 4.5860 40 1 -1.3672 3.1372 6.7127 41 1 -2.1282 1.5357 6.5536 42 1 -3.7656 3.2245 7.3371 43 1 -4.2070 2.6053 5.7280 44 1 -2.7048 5.2035 6.2842 45 1 -4.4181 5.0743 5.8201 46 1 -2.9995 5.5840 3.8511 47 1 -3.7592 3.9821 3.6918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186354883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:54 Heat of formation + Delta-G solvation = -70.581696 kcal Electronic energy + Delta-G solvation = -23404.694075 eV Core-core repulsion = 20199.799307 eV Total energy + Delta-G solvation = -3204.894767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.78731 -38.53963 -35.63269 -34.39114 -32.43921 -31.61373 -30.90911 -30.20338 -28.62548 -26.73721 -23.89856 -22.88039 -22.54020 -21.01626 -20.21024 -19.90382 -19.30347 -17.93535 -16.28962 -15.70730 -15.47449 -15.01750 -14.56762 -14.38572 -14.24650 -13.92122 -13.60800 -13.33767 -13.13869 -12.75002 -12.59380 -12.33223 -12.28576 -11.79338 -11.53454 -11.46897 -11.36843 -11.22488 -11.18240 -10.93580 -10.91836 -10.76451 -10.51788 -10.27279 -10.21069 -10.11670 -10.04093 -9.55664 -9.17886 -8.95888 -8.50662 -8.43821 -7.63472 -6.06821 -4.15674 3.28330 3.33332 3.34122 3.51192 4.11542 4.37057 4.47433 4.60098 4.61849 4.98074 5.08282 5.14593 5.22718 5.26368 5.32000 5.37316 5.38472 5.46579 5.58405 5.66063 5.70483 5.83069 5.91131 5.95907 6.01801 6.02799 6.10587 6.16233 6.25224 6.37538 6.48348 6.49332 6.56810 6.76107 7.05205 7.13900 7.25218 7.48649 7.51019 7.63756 7.71084 7.97392 8.16261 8.27458 8.84333 9.06763 9.44464 9.61604 10.98556 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.003529 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.750424 B = 7931.993807 C = 7997.246394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.288 3.712 4 H 0.047 0.953 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.728 5.728 14 C 0.695 3.305 15 O -0.595 6.595 16 N -0.753 5.753 17 C 0.168 3.832 18 H 0.084 0.916 19 C -0.164 4.164 20 C -0.092 4.092 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.113 4.113 26 H 0.048 0.952 27 H 0.018 0.982 28 H 0.040 0.960 29 H 0.097 0.903 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.382 0.618 33 H 0.387 0.613 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.717 6.811 16.187 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.186 3.814 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.379 5.379 14 C 0.396 3.604 15 O -0.474 6.474 16 N -0.410 5.410 17 C 0.062 3.938 18 H 0.102 0.898 19 C -0.223 4.223 20 C -0.111 4.111 21 C -0.151 4.151 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.151 4.151 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.214 0.786 33 H 0.220 0.780 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.401 6.651 15.066 20.030 hybrid contribution 1.642 -0.016 0.595 1.746 sum -9.760 6.635 15.661 19.610 Atomic orbital electron populations 1.21804 0.98329 0.97634 1.01361 1.21940 0.92680 1.00056 1.01965 1.18612 0.93673 0.88778 0.80369 0.93483 1.21220 0.90916 1.38963 1.06023 0.92282 1.24875 0.98470 0.94922 0.95429 1.69891 1.35122 1.37771 1.09229 0.86533 0.85040 0.78244 0.77388 1.20225 1.21175 1.20257 1.45765 1.13742 1.59470 1.18934 1.16107 0.83245 0.78447 0.82644 1.90871 1.52257 1.65633 1.38648 1.45277 1.17547 1.62570 1.15592 1.20657 0.84866 0.93600 0.94693 0.89809 1.22257 1.01295 0.96532 1.02216 1.21427 0.97504 0.96887 0.95256 1.21560 1.02020 0.96281 0.95239 1.21538 0.96821 1.00453 0.96838 1.21549 0.97504 0.96348 1.00397 1.21529 1.01063 0.96818 0.96115 1.21611 0.96181 1.00973 0.96375 0.93254 0.96244 0.94128 0.88505 0.95268 0.92578 0.78642 0.77990 0.91848 0.92091 0.93004 0.91019 0.91871 0.91634 0.92184 0.92200 0.92426 0.92046 0.92128 0.92188 0.91437 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.32 16 3 C 0.29 7.38 2.24 -69.08 -0.15 7.22 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.24 8.72 -34.44 -0.30 -14.54 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 8 N -0.88 -25.03 11.30 55.43 0.63 -24.41 16 9 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.73 -15.35 5.03 -59.81 -0.30 -15.65 16 14 C 0.70 14.04 7.10 -86.93 -0.62 13.42 16 15 O -0.60 -14.28 13.14 5.28 0.07 -14.21 16 16 N -0.75 -11.22 4.39 -58.67 -0.26 -11.47 16 17 C 0.17 2.20 2.16 -67.93 -0.15 2.05 16 18 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 19 C -0.16 -2.08 9.13 37.16 0.34 -1.74 16 20 C -0.09 -0.91 1.82 -90.62 -0.17 -1.07 16 21 C -0.11 -1.15 5.04 -26.73 -0.13 -1.29 16 22 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 23 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 24 C -0.12 -0.90 5.93 -26.70 -0.16 -1.06 16 25 C -0.11 -0.99 4.85 -26.71 -0.13 -1.12 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.92 5.64 -51.93 -0.29 0.63 16 29 H 0.10 2.66 5.96 -51.93 -0.31 2.35 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.38 7.04 8.55 -40.82 -0.35 6.69 16 33 H 0.39 4.78 8.40 -40.82 -0.34 4.44 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.72 7.44 -51.93 -0.39 0.33 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -30.06 356.57 -9.80 -39.86 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -8.58 Total: 9.52 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.71 Total: -4.79 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.07 Total: -51.53 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.07 Total: -14.21 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.06 -9.80 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186354883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.726 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds