Wall clock time and date at job start Tue Mar 31 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 N 1.46499 * 109.46437 * 65.00436 * 3 2 1 14 14 C 1.34776 * 120.00348 * 274.99648 * 13 3 2 15 15 O 1.21596 * 119.99701 * 0.02562 * 14 13 3 16 16 N 1.34768 * 120.00584 * 180.02562 * 14 13 3 17 17 C 1.46500 * 120.00569 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.46992 * 34.99479 * 17 16 14 19 19 C 1.53001 * 109.47074 * 275.00049 * 17 16 14 20 20 C 1.53004 * 109.47410 * 154.99680 * 17 16 14 21 21 C 1.53002 * 109.47068 * 299.99924 * 20 17 16 22 22 C 1.52996 * 109.47165 * 179.97438 * 21 20 17 23 23 C 1.53007 * 109.46720 * 60.00351 * 22 21 20 24 24 C 1.53002 * 109.47015 * 299.99740 * 23 22 21 25 25 C 1.52998 * 109.46801 * 180.02562 * 20 17 16 26 26 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 27 27 H 1.09007 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 29 29 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 30 30 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99954 * 95.00750 * 13 3 2 33 33 H 0.97003 * 120.00149 * 359.97438 * 16 14 13 34 34 H 1.08996 * 109.47496 * 59.99881 * 19 17 16 35 35 H 1.09006 * 109.47145 * 179.97438 * 19 17 16 36 36 H 1.09003 * 109.46746 * 299.99580 * 19 17 16 37 37 H 1.08993 * 109.47081 * 59.99984 * 20 17 16 38 38 H 1.09001 * 109.47141 * 300.00616 * 21 20 17 39 39 H 1.09006 * 109.47014 * 59.99846 * 21 20 17 40 40 H 1.08995 * 109.46971 * 300.00681 * 22 21 20 41 41 H 1.09002 * 109.47326 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.46977 * 179.97438 * 23 22 21 43 43 H 1.08993 * 109.47376 * 59.99948 * 23 22 21 44 44 H 1.09003 * 109.47112 * 300.00215 * 24 23 22 45 45 H 1.08994 * 109.46694 * 180.02562 * 24 23 22 46 46 H 1.08992 * 109.47305 * 299.99494 * 25 20 17 47 47 H 1.09005 * 109.47165 * 60.00392 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.6013 0.1572 -0.2444 11 1 6.3968 0.2332 -2.6593 12 1 6.4945 2.2945 -1.3852 13 7 1.6525 2.0973 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3416 2.6318 0.4323 16 7 0.0788 3.2671 2.5187 17 6 -1.2446 3.8828 2.6442 18 1 -1.9732 3.2951 2.0857 19 6 -1.2002 5.3059 2.0840 20 6 -1.6484 3.9277 4.1193 21 6 -1.6929 2.5046 4.6794 22 6 -2.0961 2.5496 6.1546 23 6 -3.4781 3.1928 6.2861 24 6 -3.4337 4.6159 5.7260 25 6 -3.0308 4.5702 4.2502 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.8287 -0.0519 -2.9548 32 1 2.2720 2.1230 1.9978 33 1 0.6983 3.2927 3.2647 34 1 -0.9125 5.2739 1.0331 35 1 -2.1850 5.7639 2.1770 36 1 -0.4715 5.8936 2.6425 37 1 -0.9199 4.5154 4.6777 38 1 -2.4214 1.9169 4.1209 39 1 -0.7082 2.0465 4.5860 40 1 -1.3672 3.1372 6.7127 41 1 -2.1282 1.5357 6.5536 42 1 -3.7656 3.2245 7.3371 43 1 -4.2070 2.6053 5.7280 44 1 -2.7048 5.2035 6.2842 45 1 -4.4181 5.0743 5.8201 46 1 -2.9995 5.5840 3.8511 47 1 -3.7592 3.9821 3.6918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186354883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:53 Heat of formation + Delta-G solvation = -88.742816 kcal Electronic energy + Delta-G solvation = -23405.481600 eV Core-core repulsion = 20199.799307 eV Total energy + Delta-G solvation = -3205.682292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16005 -39.66407 -37.20972 -35.88896 -34.30757 -33.20037 -31.97200 -31.41501 -29.65353 -28.67979 -25.23575 -24.51915 -23.27257 -22.41084 -21.42717 -21.26948 -20.65645 -19.56226 -17.99224 -17.34876 -16.76638 -16.37733 -16.22635 -15.52246 -15.22879 -15.05047 -14.88463 -14.56523 -14.45748 -14.26796 -13.96035 -13.59031 -13.39279 -13.19097 -13.08425 -12.88832 -12.85028 -12.63667 -12.41163 -12.31440 -12.16453 -12.02462 -11.94539 -11.73077 -11.56967 -11.28213 -11.07606 -10.99538 -10.89279 -10.80929 -10.50631 -9.97214 -9.39850 -8.13600 -6.30807 1.45478 1.47693 1.55312 2.04973 2.43707 2.48352 3.15528 3.63197 3.66577 3.86375 3.92050 4.22482 4.32744 4.39855 4.48372 4.51791 4.56155 4.60183 4.67429 4.69112 4.71188 4.77926 4.78902 4.89285 4.99448 5.07947 5.12480 5.19533 5.27116 5.29756 5.31597 5.33733 5.34370 5.46318 5.48426 5.53406 5.58692 5.63713 5.68240 5.79370 5.83402 5.94457 6.21456 6.45283 6.78466 7.37489 7.48186 7.94620 8.91797 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.003529 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.750424 B = 7931.993807 C = 7997.246394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.298 3.702 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.725 5.725 14 C 0.693 3.307 15 O -0.636 6.636 16 N -0.732 5.732 17 C 0.166 3.834 18 H 0.055 0.945 19 C -0.159 4.159 20 C -0.079 4.079 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.113 4.113 26 H 0.022 0.978 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.398 0.602 33 H 0.404 0.596 34 H 0.025 0.975 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 7.700 18.910 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.189 1.189 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.378 5.378 14 C 0.394 3.606 15 O -0.518 6.518 16 N -0.389 5.389 17 C 0.061 3.939 18 H 0.073 0.927 19 C -0.217 4.217 20 C -0.098 4.098 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.151 4.151 25 C -0.151 4.151 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.232 0.768 33 H 0.240 0.760 34 H 0.044 0.956 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.837 7.566 17.868 22.225 hybrid contribution 1.390 -0.266 -0.248 1.436 sum -9.447 7.300 17.620 21.284 Atomic orbital electron populations 1.21620 0.97111 0.98673 1.00148 1.21787 0.93641 0.99437 1.01039 1.18169 0.93222 0.88686 0.80538 0.98821 1.21561 0.91506 1.39009 1.06546 0.91145 1.25775 1.03330 0.94414 0.95007 1.70051 1.37130 1.38469 1.09740 0.85421 0.79081 0.78404 0.77540 1.18883 1.21212 1.19720 1.45412 1.14588 1.59656 1.18106 1.16244 0.82491 0.78457 0.83456 1.90850 1.53329 1.67056 1.40599 1.45088 1.18531 1.61007 1.14237 1.20822 0.82990 0.93197 0.96924 0.92718 1.22201 1.03128 0.96449 0.99916 1.21350 0.98748 0.97205 0.92496 1.21547 1.01035 0.96051 0.96503 1.21510 0.97534 1.00891 0.95319 1.21562 0.96804 0.96369 1.01121 1.21512 1.01905 0.96779 0.94933 1.21620 0.94932 1.01043 0.97498 0.95836 0.93921 0.93904 0.91121 0.94235 0.92630 0.76835 0.76009 0.95562 0.89757 0.91313 0.89288 0.93659 0.92508 0.91143 0.92153 0.91166 0.92793 0.91199 0.91181 0.90560 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.51 71.98 0.61 -4.97 16 2 C -0.12 -6.10 5.45 30.60 0.17 -5.93 16 3 C 0.30 15.71 2.24 44.25 0.10 15.81 16 4 H -0.01 -0.39 7.58 -2.39 -0.02 -0.40 16 5 C -0.55 -29.47 8.72 25.60 0.22 -29.24 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 7 C 0.01 0.80 5.30 84.65 0.45 1.25 16 8 N -0.92 -53.21 11.30 21.45 0.24 -52.96 16 9 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.72 -30.81 5.03 -461.40 -2.32 -33.13 16 14 C 0.69 28.47 7.10 179.06 1.27 29.74 16 15 O -0.64 -31.86 13.14 -4.02 -0.05 -31.91 16 16 N -0.73 -21.37 4.39 -457.81 -2.01 -23.38 16 17 C 0.17 4.26 2.16 44.99 0.10 4.36 16 18 H 0.05 1.76 7.58 -2.39 -0.02 1.74 16 19 C -0.16 -3.87 9.13 71.98 0.66 -3.21 16 20 C -0.08 -1.41 1.82 -10.79 -0.02 -1.43 16 21 C -0.11 -2.16 5.04 30.59 0.15 -2.01 16 22 C -0.12 -1.70 5.92 30.60 0.18 -1.52 16 23 C -0.12 -1.60 5.92 30.60 0.18 -1.42 16 24 C -0.11 -1.39 5.93 30.61 0.18 -1.21 16 25 C -0.11 -1.72 4.85 30.61 0.15 -1.57 16 26 H 0.02 1.19 7.84 -2.39 -0.02 1.17 16 27 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.04 1.97 5.64 -2.39 -0.01 1.96 16 29 H 0.07 4.00 5.96 -2.39 -0.01 3.98 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.40 14.30 8.55 -92.71 -0.79 13.51 16 33 H 0.40 9.25 8.40 -92.71 -0.78 8.47 16 34 H 0.03 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.65 6.43 -2.38 -0.02 1.63 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.16 7.44 -2.38 -0.02 1.15 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.08 1.04 6.43 -2.39 -0.02 1.03 16 47 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -67.37 356.57 1.66 -65.71 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.63 Total: 32.54 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.40 Total: -1.36 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -4.09 Total: -109.48 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.05 Total: -31.91 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -67.37 1.66 -65.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186354883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.037 kcal (2) G-P(sol) polarization free energy of solvation -67.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds