Wall clock time and date at job start Tue Mar 31 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21588 * 119.99628 * 359.97438 * 14 13 3 16 16 N 1.34767 * 120.00297 * 180.02562 * 14 13 3 17 17 C 1.46502 * 120.00497 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.46493 * 34.99617 * 17 16 14 19 19 C 1.53001 * 109.47212 * 274.99954 * 17 16 14 20 20 C 1.52994 * 109.47362 * 154.99626 * 17 16 14 21 21 C 1.53001 * 109.47224 * 300.00320 * 20 17 16 22 22 C 1.52994 * 109.47224 * 179.97438 * 21 20 17 23 23 C 1.52998 * 109.47473 * 60.00067 * 22 21 20 24 24 C 1.53001 * 109.46841 * 300.00167 * 23 22 21 25 25 C 1.52999 * 109.47432 * 59.99959 * 24 23 22 26 26 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 27 27 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 28 28 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 30 30 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 31 31 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 33 33 H 0.97003 * 119.99842 * 359.97438 * 16 14 13 34 34 H 1.09002 * 109.46516 * 59.99731 * 19 17 16 35 35 H 1.08994 * 109.46950 * 179.97438 * 19 17 16 36 36 H 1.08999 * 109.47077 * 299.99782 * 19 17 16 37 37 H 1.08999 * 109.46935 * 60.00213 * 20 17 16 38 38 H 1.08999 * 109.47077 * 299.99806 * 21 20 17 39 39 H 1.09001 * 109.47198 * 60.00238 * 21 20 17 40 40 H 1.09003 * 109.47324 * 300.00179 * 22 21 20 41 41 H 1.09000 * 109.47426 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47670 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47183 * 59.99977 * 23 22 21 44 44 H 1.09003 * 109.47116 * 299.99374 * 24 23 22 45 45 H 1.09007 * 109.47202 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47634 * 180.02562 * 25 24 23 47 47 H 1.09003 * 109.47447 * 59.99618 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 7 0.0783 3.2665 -2.5187 17 6 -1.2451 3.8823 -2.6441 18 1 -1.5366 4.3150 -1.6870 19 6 -2.2656 2.8190 -3.0549 20 6 -1.1976 4.9813 -3.7074 21 6 -0.1771 6.0447 -3.2965 22 6 -0.1292 7.1434 -4.3602 23 6 -1.5111 7.7867 -4.4917 24 6 -2.5316 6.7233 -4.9025 25 6 -2.5796 5.6246 -3.8389 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 3.8292 -0.0558 2.9526 32 1 2.2719 2.1232 -1.9978 33 1 0.6978 3.2922 -3.2647 34 1 -2.2994 2.0360 -2.2972 35 1 -3.2502 3.2770 -3.1477 36 1 -1.9741 2.3862 -4.0119 37 1 -0.9061 4.5486 -4.6644 38 1 -0.4686 6.4775 -2.3396 39 1 0.8075 5.5866 -3.2034 40 1 0.1625 6.7104 -5.3170 41 1 0.5975 7.9012 -4.0673 42 1 -1.4768 8.5698 -5.2491 43 1 -1.8028 8.2198 -3.5349 44 1 -2.2399 6.2903 -5.8594 45 1 -3.5163 7.1815 -4.9958 46 1 -3.3063 4.8668 -4.1317 47 1 -2.8713 6.0577 -2.8820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186354886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:58 Heat of formation + Delta-G solvation = -70.651378 kcal Electronic energy + Delta-G solvation = -23376.579337 eV Core-core repulsion = 20171.681548 eV Total energy + Delta-G solvation = -3204.897789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.78678 -38.53862 -35.62692 -34.39472 -32.44079 -31.61948 -30.89628 -30.21358 -28.60460 -26.75512 -23.90517 -22.86712 -22.53490 -21.00454 -20.21641 -19.89819 -19.30589 -17.93525 -16.33121 -15.69355 -15.44723 -14.86106 -14.71153 -14.36196 -14.24210 -14.00580 -13.55107 -13.41915 -13.00196 -12.79936 -12.59413 -12.39865 -12.13115 -11.91169 -11.53333 -11.42102 -11.38835 -11.21753 -11.19485 -10.93842 -10.89068 -10.78410 -10.51251 -10.26023 -10.19310 -10.09902 -10.06497 -9.54443 -9.17317 -8.95888 -8.52382 -8.43361 -7.63266 -6.07159 -4.15723 3.27216 3.33444 3.35144 3.51237 4.11548 4.36891 4.47992 4.60857 4.62623 4.98536 5.08849 5.14766 5.22929 5.26452 5.32586 5.37807 5.39385 5.46961 5.58527 5.65889 5.70756 5.83466 5.91406 5.96248 6.02530 6.03496 6.11224 6.16538 6.26188 6.37530 6.47597 6.48667 6.57549 6.76012 7.05332 7.13713 7.25351 7.48748 7.50912 7.63610 7.71160 7.97236 8.16165 8.27241 8.84533 9.06739 9.44394 9.61564 10.98312 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024493 B = 0.003790 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.889323 B = 7385.616917 C = 8262.343711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.288 3.712 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.728 5.728 14 C 0.696 3.304 15 O -0.595 6.595 16 N -0.753 5.753 17 C 0.168 3.832 18 H 0.084 0.916 19 C -0.164 4.164 20 C -0.092 4.092 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.114 4.114 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.018 0.982 29 H 0.028 0.972 30 H 0.097 0.903 31 H 0.264 0.736 32 H 0.382 0.618 33 H 0.387 0.613 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 10.336 -14.825 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.185 3.815 4 H 0.065 0.935 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.379 5.379 14 C 0.396 3.604 15 O -0.474 6.474 16 N -0.410 5.410 17 C 0.062 3.938 18 H 0.102 0.898 19 C -0.223 4.223 20 C -0.111 4.111 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.151 4.151 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.214 0.786 33 H 0.220 0.780 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.890 10.179 -13.709 19.731 hybrid contribution 1.614 -0.085 -0.609 1.727 sum -8.276 10.094 -14.318 19.375 Atomic orbital electron populations 1.21809 0.98330 0.97640 1.01375 1.21937 0.92690 1.00068 1.01948 1.18615 0.93701 0.88774 0.80379 0.93464 1.21256 0.90897 1.38846 1.06040 0.92231 1.24882 0.98480 0.94912 0.95460 1.69908 1.35012 1.37869 1.09203 0.86472 0.85039 0.77585 0.78111 1.20627 1.21124 1.19924 1.45767 1.13785 1.59427 1.18941 1.16104 0.83175 0.78604 0.82556 1.90869 1.52407 1.65280 1.38844 1.45277 1.17465 1.62746 1.15498 1.20655 0.82423 0.91764 0.98982 0.89794 1.22255 0.98638 0.99841 1.01537 1.21425 0.95917 0.95097 0.98624 1.21560 0.99311 0.95641 0.98614 1.21536 0.96804 0.98043 0.99268 1.21547 0.95299 0.97647 1.01308 1.21521 0.98867 0.96398 0.98729 1.21605 0.96326 0.97748 0.99466 0.93254 0.94094 0.96244 0.95277 0.88515 0.92645 0.78640 0.77989 0.91873 0.92082 0.93035 0.91044 0.91849 0.91586 0.92196 0.92182 0.92425 0.92040 0.92140 0.92192 0.91451 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.32 16 3 C 0.29 7.37 2.24 -69.08 -0.15 7.21 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.20 8.73 -34.44 -0.30 -14.51 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -25.01 11.31 55.43 0.63 -24.39 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.73 -15.34 5.03 -59.81 -0.30 -15.64 16 14 C 0.70 14.03 7.10 -86.93 -0.62 13.42 16 15 O -0.60 -14.27 13.14 5.29 0.07 -14.21 16 16 N -0.75 -11.21 4.39 -58.68 -0.26 -11.47 16 17 C 0.17 2.20 2.16 -67.93 -0.15 2.05 16 18 H 0.08 1.32 7.58 -51.93 -0.39 0.92 16 19 C -0.16 -2.05 9.13 37.16 0.34 -1.71 16 20 C -0.09 -0.91 1.82 -90.62 -0.17 -1.07 16 21 C -0.11 -1.18 5.05 -26.73 -0.13 -1.31 16 22 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 23 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 24 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 25 C -0.11 -0.99 4.85 -26.73 -0.13 -1.12 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.66 5.96 -51.93 -0.31 2.35 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.38 7.04 8.55 -40.82 -0.35 6.69 16 33 H 0.39 4.78 8.40 -40.82 -0.34 4.44 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.74 7.45 -51.93 -0.39 0.35 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 46 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -30.05 356.57 -9.80 -39.85 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -8.58 Total: 9.55 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.71 Total: -4.84 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.07 Total: -51.49 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.07 Total: -14.21 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.05 -9.80 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186354886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.804 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds