Wall clock time and date at job start Tue Mar 31 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21588 * 119.99628 * 359.97438 * 14 13 3 16 16 N 1.34767 * 120.00297 * 180.02562 * 14 13 3 17 17 C 1.46502 * 120.00497 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.46493 * 34.99617 * 17 16 14 19 19 C 1.53001 * 109.47212 * 274.99954 * 17 16 14 20 20 C 1.52994 * 109.47362 * 154.99626 * 17 16 14 21 21 C 1.53001 * 109.47224 * 300.00320 * 20 17 16 22 22 C 1.52994 * 109.47224 * 179.97438 * 21 20 17 23 23 C 1.52998 * 109.47473 * 60.00067 * 22 21 20 24 24 C 1.53001 * 109.46841 * 300.00167 * 23 22 21 25 25 C 1.52999 * 109.47432 * 59.99959 * 24 23 22 26 26 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 27 27 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 28 28 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 30 30 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 31 31 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 33 33 H 0.97003 * 119.99842 * 359.97438 * 16 14 13 34 34 H 1.09002 * 109.46516 * 59.99731 * 19 17 16 35 35 H 1.08994 * 109.46950 * 179.97438 * 19 17 16 36 36 H 1.08999 * 109.47077 * 299.99782 * 19 17 16 37 37 H 1.08999 * 109.46935 * 60.00213 * 20 17 16 38 38 H 1.08999 * 109.47077 * 299.99806 * 21 20 17 39 39 H 1.09001 * 109.47198 * 60.00238 * 21 20 17 40 40 H 1.09003 * 109.47324 * 300.00179 * 22 21 20 41 41 H 1.09000 * 109.47426 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47670 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47183 * 59.99977 * 23 22 21 44 44 H 1.09003 * 109.47116 * 299.99374 * 24 23 22 45 45 H 1.09007 * 109.47202 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47634 * 180.02562 * 25 24 23 47 47 H 1.09003 * 109.47447 * 59.99618 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 7 0.0783 3.2665 -2.5187 17 6 -1.2451 3.8823 -2.6441 18 1 -1.5366 4.3150 -1.6870 19 6 -2.2656 2.8190 -3.0549 20 6 -1.1976 4.9813 -3.7074 21 6 -0.1771 6.0447 -3.2965 22 6 -0.1292 7.1434 -4.3602 23 6 -1.5111 7.7867 -4.4917 24 6 -2.5316 6.7233 -4.9025 25 6 -2.5796 5.6246 -3.8389 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 3.8292 -0.0558 2.9526 32 1 2.2719 2.1232 -1.9978 33 1 0.6978 3.2922 -3.2647 34 1 -2.2994 2.0360 -2.2972 35 1 -3.2502 3.2770 -3.1477 36 1 -1.9741 2.3862 -4.0119 37 1 -0.9061 4.5486 -4.6644 38 1 -0.4686 6.4775 -2.3396 39 1 0.8075 5.5866 -3.2034 40 1 0.1625 6.7104 -5.3170 41 1 0.5975 7.9012 -4.0673 42 1 -1.4768 8.5698 -5.2491 43 1 -1.8028 8.2198 -3.5349 44 1 -2.2399 6.2903 -5.8594 45 1 -3.5163 7.1815 -4.9958 46 1 -3.3063 4.8668 -4.1317 47 1 -2.8713 6.0577 -2.8820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186354886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:57 Heat of formation + Delta-G solvation = -88.813506 kcal Electronic energy + Delta-G solvation = -23377.366906 eV Core-core repulsion = 20171.681548 eV Total energy + Delta-G solvation = -3205.685358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16154 -39.66781 -37.20633 -35.89085 -34.30706 -33.21051 -31.96166 -31.42745 -29.62709 -28.70019 -25.25752 -24.48899 -23.27848 -22.41170 -21.42777 -21.27269 -20.65808 -19.56242 -18.01605 -17.39097 -16.57924 -16.36073 -16.29367 -15.69986 -15.19763 -15.00465 -14.88607 -14.58164 -14.44439 -14.17777 -14.00178 -13.61605 -13.39569 -13.19322 -13.08012 -12.93137 -12.79937 -12.67521 -12.40971 -12.29832 -12.14890 -12.02323 -11.94955 -11.73756 -11.55132 -11.28512 -11.07668 -10.99248 -10.88497 -10.81531 -10.51044 -9.98344 -9.39282 -8.13893 -6.30789 1.45546 1.46045 1.56673 2.05103 2.43522 2.48504 3.15456 3.63207 3.66558 3.86038 3.91618 4.22372 4.32590 4.39687 4.48388 4.51908 4.55983 4.60643 4.67248 4.68742 4.71239 4.77764 4.79336 4.89558 4.99931 5.08260 5.11653 5.19632 5.26622 5.30719 5.31221 5.33395 5.34177 5.45761 5.49096 5.53437 5.59014 5.63385 5.68370 5.79375 5.83372 5.94442 6.21420 6.45346 6.78707 7.37431 7.48242 7.94692 8.91767 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024493 B = 0.003790 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.889323 B = 7385.616917 C = 8262.343711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.298 3.702 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.260 1.260 13 N -0.725 5.725 14 C 0.694 3.306 15 O -0.636 6.636 16 N -0.732 5.732 17 C 0.165 3.835 18 H 0.053 0.947 19 C -0.158 4.158 20 C -0.079 4.079 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.113 4.113 26 H 0.022 0.978 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.398 0.602 33 H 0.404 0.596 34 H 0.028 0.972 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.802 10.909 -17.712 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.193 3.807 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.184 1.184 13 N -0.378 5.378 14 C 0.394 3.606 15 O -0.518 6.518 16 N -0.389 5.389 17 C 0.060 3.940 18 H 0.071 0.929 19 C -0.216 4.216 20 C -0.098 4.098 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.151 4.151 25 C -0.151 4.151 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.232 0.768 33 H 0.240 0.760 34 H 0.047 0.953 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.487 10.781 -16.673 22.005 hybrid contribution 1.425 -0.211 0.298 1.471 sum -8.062 10.570 -16.375 21.092 Atomic orbital electron populations 1.21626 0.97090 0.98685 1.00184 1.21784 0.93670 0.99421 1.01024 1.18173 0.93242 0.88697 0.80541 0.98825 1.21588 0.91483 1.38886 1.06544 0.91146 1.25779 1.03325 0.94416 0.95037 1.70064 1.37038 1.38554 1.09734 0.85367 0.79109 0.77381 0.78585 1.20496 1.20956 1.18426 1.45413 1.14628 1.59617 1.18111 1.16240 0.82426 0.78599 0.83377 1.90848 1.53472 1.66722 1.40788 1.45088 1.18504 1.61081 1.14193 1.20821 0.81431 0.92875 0.98842 0.92917 1.22192 0.99665 0.98631 1.01109 1.21350 0.96839 0.93736 0.97868 1.21549 0.98765 0.96375 0.98518 1.21509 0.97446 0.97378 0.98922 1.21560 0.94839 0.98095 1.01372 1.21504 0.99364 0.95760 0.98478 1.21615 0.95450 0.98417 0.99602 0.95870 0.93807 0.93915 0.94221 0.91151 0.92648 0.76841 0.76010 0.95322 0.89822 0.91213 0.89180 0.93824 0.92612 0.91058 0.92260 0.91133 0.92870 0.91123 0.91148 0.90423 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.51 71.98 0.61 -4.98 16 2 C -0.12 -6.09 5.45 30.60 0.17 -5.92 16 3 C 0.30 15.68 2.24 44.24 0.10 15.78 16 4 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 5 C -0.55 -29.39 8.73 25.60 0.22 -29.17 16 6 H 0.07 3.54 7.74 -2.92 -0.02 3.52 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -53.19 11.31 21.45 0.24 -52.95 16 9 Si 0.97 42.50 29.54 68.60 2.03 44.53 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 N -0.72 -30.81 5.03 -461.41 -2.32 -33.13 16 14 C 0.69 28.46 7.10 179.06 1.27 29.73 16 15 O -0.64 -31.85 13.14 -3.99 -0.05 -31.90 16 16 N -0.73 -21.36 4.39 -457.83 -2.01 -23.37 16 17 C 0.17 4.25 2.16 44.99 0.10 4.34 16 18 H 0.05 1.71 7.58 -2.39 -0.02 1.69 16 19 C -0.16 -3.74 9.13 71.98 0.66 -3.08 16 20 C -0.08 -1.42 1.82 -10.79 -0.02 -1.44 16 21 C -0.11 -2.25 5.05 30.59 0.15 -2.10 16 22 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 23 C -0.12 -1.65 5.92 30.59 0.18 -1.46 16 24 C -0.11 -1.40 5.92 30.59 0.18 -1.22 16 25 C -0.11 -1.73 4.85 30.60 0.15 -1.58 16 26 H 0.02 1.17 7.84 -2.39 -0.02 1.15 16 27 H 0.04 2.01 5.64 -2.39 -0.01 2.00 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 3.98 5.96 -2.39 -0.01 3.97 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.40 14.31 8.55 -92.71 -0.79 13.51 16 33 H 0.40 9.24 8.40 -92.71 -0.78 8.47 16 34 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.59 6.43 -2.39 -0.02 1.58 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.19 7.45 -2.39 -0.02 1.18 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.08 1.05 6.43 -2.39 -0.02 1.03 16 47 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -67.43 356.57 1.66 -65.77 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.63 Total: 32.50 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 4.40 Total: -1.45 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -4.09 Total: -109.44 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.05 Total: -31.90 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -67.43 1.66 -65.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186354886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.044 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds