Wall clock time and date at job start Tue Mar 31 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 H 1.09001 * 109.46950 * 55.01033 * 3 2 1 5 5 C 1.50706 * 109.47023 * 175.00307 * 3 2 1 6 6 H 1.07995 * 119.99761 * 120.00317 * 5 3 2 7 7 C 1.37879 * 119.99904 * 300.00499 * 5 3 2 8 8 N 1.31515 * 120.00145 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46951 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47048 * 119.99543 * 9 7 5 12 12 H 1.48492 * 109.47063 * 240.00017 * 9 7 5 13 13 N 1.46496 * 109.47575 * 295.00182 * 3 2 1 14 14 C 1.34777 * 119.99614 * 84.99689 * 13 3 2 15 15 O 1.21588 * 120.00178 * 0.02562 * 14 13 3 16 16 N 1.34784 * 119.99964 * 180.02562 * 14 13 3 17 17 C 1.46493 * 119.99864 * 179.73002 * 16 14 13 18 18 H 1.09003 * 109.47333 * 324.99821 * 17 16 14 19 19 C 1.52999 * 109.47638 * 84.99998 * 17 16 14 20 20 C 1.53006 * 109.47135 * 204.99938 * 17 16 14 21 21 C 1.53000 * 109.46627 * 300.00030 * 20 17 16 22 22 C 1.53007 * 109.46876 * 179.97438 * 21 20 17 23 23 C 1.53003 * 109.46932 * 59.99923 * 22 21 20 24 24 C 1.53005 * 109.47141 * 299.99955 * 23 22 21 25 25 C 1.52994 * 109.47460 * 179.97438 * 20 17 16 26 26 H 1.09007 * 109.46395 * 299.99527 * 1 2 3 27 27 H 1.08996 * 109.47009 * 59.99233 * 1 2 3 28 28 H 1.08999 * 109.47039 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46395 * 240.00472 * 2 1 3 30 30 H 1.08997 * 109.47491 * 120.00982 * 2 1 3 31 31 H 0.97002 * 119.99954 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00499 * 265.00266 * 13 3 2 33 33 H 0.97000 * 119.99339 * 0.02562 * 16 14 13 34 34 H 1.09003 * 109.46886 * 300.00173 * 19 17 16 35 35 H 1.09003 * 109.46903 * 59.99559 * 19 17 16 36 36 H 1.08994 * 109.47399 * 179.97438 * 19 17 16 37 37 H 1.09004 * 109.46741 * 59.99614 * 20 17 16 38 38 H 1.09001 * 109.47655 * 299.99545 * 21 20 17 39 39 H 1.09003 * 109.47466 * 59.99905 * 21 20 17 40 40 H 1.09001 * 109.46845 * 300.00333 * 22 21 20 41 41 H 1.08996 * 109.47219 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.46773 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46765 * 60.00033 * 23 22 21 44 44 H 1.08994 * 109.46794 * 300.00104 * 24 23 22 45 45 H 1.08994 * 109.46994 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.47197 * 299.99998 * 25 20 17 47 47 H 1.09003 * 109.47176 * 59.99585 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8782 1.2278 8 7 3.4063 0.3372 2.1732 9 14 6.0051 0.8798 1.3809 10 1 6.5989 1.5440 0.1928 11 1 6.4002 1.6154 2.6089 12 1 6.4962 -0.5192 1.4623 13 7 1.6525 2.0976 -1.2517 14 6 0.4351 2.6644 -1.3667 15 8 -0.3412 2.6325 -0.4315 16 7 0.0783 3.2667 -2.5185 17 6 -1.2471 3.8777 -2.6456 18 1 -1.9744 3.2870 -2.0886 19 6 -1.2088 5.3006 -2.0845 20 6 -1.6489 3.9221 -4.1213 21 6 -0.6279 4.7513 -4.9030 22 6 -1.0294 4.7952 -6.3788 23 6 -2.4137 5.4329 -6.5120 24 6 -3.4346 4.6037 -5.7302 25 6 -3.0333 4.5596 -4.2539 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 3.8295 -0.0613 2.9497 32 1 2.2719 2.1233 -1.9977 33 1 0.6976 3.2918 -3.2647 34 1 -0.9225 5.2689 -1.0332 35 1 -0.4814 5.8913 -2.6414 36 1 -2.1948 5.7553 -2.1794 37 1 -1.6762 2.9083 -4.5210 38 1 -0.6006 5.7650 -4.5033 39 1 0.3582 4.2967 -4.8084 40 1 -1.0565 3.7813 -6.7782 41 1 -0.3023 5.3862 -6.9356 42 1 -2.6999 5.4638 -7.5633 43 1 -2.3866 6.4467 -6.1124 44 1 -3.4616 3.5900 -6.1297 45 1 -4.4209 5.0578 -5.8254 46 1 -3.7604 3.9685 -3.6971 47 1 -3.0064 5.5732 -3.8540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186408063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:01 Heat of formation + Delta-G solvation = -67.914504 kcal Electronic energy + Delta-G solvation = -23359.154528 eV Core-core repulsion = 20154.375419 eV Total energy + Delta-G solvation = -3204.779109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.88464 -38.60025 -35.60883 -34.39094 -32.43737 -31.59207 -30.92481 -30.21484 -28.44672 -26.74775 -24.15898 -23.02953 -22.77025 -21.15456 -20.27982 -19.36197 -19.15525 -17.99817 -16.30329 -15.66187 -15.35925 -14.89522 -14.78456 -14.50742 -14.36043 -14.29096 -13.76237 -13.25990 -12.97661 -12.59889 -12.45386 -12.43081 -12.27069 -11.92114 -11.86373 -11.45840 -11.30482 -11.19670 -11.06637 -10.90768 -10.88768 -10.78728 -10.51074 -10.26466 -10.25489 -10.10757 -10.01743 -9.55767 -9.18153 -8.94634 -8.51875 -8.44227 -7.63666 -6.07256 -4.15820 3.26225 3.33596 3.36133 3.51656 4.10907 4.36971 4.50287 4.53792 4.57154 4.97683 5.05004 5.10079 5.22019 5.25623 5.30231 5.32617 5.35381 5.44783 5.54941 5.58264 5.70440 5.82217 5.89025 5.96445 5.98118 6.00380 6.07714 6.12460 6.25225 6.29477 6.48317 6.53849 6.56773 6.75957 7.05451 7.13943 7.25135 7.48668 7.50902 7.63663 7.71405 7.97266 8.16052 8.27339 8.84652 9.06473 9.44342 9.61431 10.98173 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029246 B = 0.003533 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.174064 B = 7923.715985 C = 8348.485329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.728 5.728 14 C 0.695 3.305 15 O -0.595 6.595 16 N -0.755 5.755 17 C 0.168 3.832 18 H 0.084 0.916 19 C -0.165 4.165 20 C -0.093 4.093 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.114 4.114 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.019 0.981 29 H 0.028 0.972 30 H 0.097 0.903 31 H 0.263 0.737 32 H 0.382 0.618 33 H 0.387 0.613 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.971 8.519 -16.407 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.065 0.935 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.379 5.379 14 C 0.395 3.605 15 O -0.474 6.474 16 N -0.412 5.412 17 C 0.062 3.938 18 H 0.102 0.898 19 C -0.224 4.224 20 C -0.112 4.112 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.152 4.152 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.214 0.786 33 H 0.221 0.779 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.650 8.366 -15.297 20.430 hybrid contribution 1.628 -0.060 -0.585 1.731 sum -9.022 8.305 -15.882 20.065 Atomic orbital electron populations 1.21806 0.98335 0.97651 1.01354 1.21943 0.92686 1.00057 1.01984 1.18624 0.93730 0.88785 0.80382 0.93456 1.21296 0.90903 1.38632 1.06129 0.92172 1.24883 0.98489 0.94944 0.95443 1.69915 1.34915 1.37815 1.09346 0.86418 0.85048 0.77704 0.78051 1.19812 1.20934 1.20935 1.45764 1.13750 1.59450 1.18941 1.16129 0.83264 0.78435 0.82690 1.90868 1.52278 1.65602 1.38643 1.45357 1.17539 1.62717 1.15596 1.20617 0.84801 0.93758 0.94601 0.89831 1.22296 1.01354 0.96623 1.02118 1.21420 0.95273 0.99890 0.94619 1.21652 0.98319 1.00717 0.94771 1.21535 0.96630 1.00917 0.96604 1.21537 0.95137 0.99331 0.99674 1.21532 0.98327 1.00300 0.95461 1.21607 0.95886 1.01379 0.96282 0.93241 0.94152 0.96217 0.95270 0.88465 0.92700 0.78645 0.77891 0.91948 0.92666 0.92149 0.90798 0.91318 0.92059 0.92091 0.92193 0.92395 0.92075 0.92094 0.92156 0.91735 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.19 5.45 -26.73 -0.15 -3.33 16 3 C 0.29 7.37 2.24 -69.08 -0.15 7.22 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -25.02 11.29 55.43 0.63 -24.40 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.73 -15.44 5.03 -59.81 -0.30 -15.74 16 14 C 0.69 14.15 7.10 -86.91 -0.62 13.53 16 15 O -0.59 -14.34 13.14 5.29 0.07 -14.27 16 16 N -0.75 -11.39 5.00 -58.67 -0.29 -11.68 16 17 C 0.17 2.22 2.40 -67.93 -0.16 2.05 16 18 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 19 C -0.17 -2.09 8.78 37.16 0.33 -1.77 16 20 C -0.09 -0.92 2.18 -90.62 -0.20 -1.12 16 21 C -0.12 -1.03 4.68 -26.73 -0.13 -1.16 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 23 C -0.12 -0.87 5.92 -26.73 -0.16 -1.02 16 24 C -0.12 -0.90 5.92 -26.71 -0.16 -1.06 16 25 C -0.11 -0.99 4.86 -26.71 -0.13 -1.12 16 26 H 0.05 1.22 7.84 -51.92 -0.41 0.82 16 27 H 0.04 0.92 5.64 -51.93 -0.29 0.63 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 32 H 0.38 7.09 8.55 -40.82 -0.35 6.74 16 33 H 0.39 4.88 6.88 -40.82 -0.28 4.60 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.64 6.43 -51.93 -0.33 0.30 16 36 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 39 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -30.16 351.17 -9.68 -39.84 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.29 Total: 9.65 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.76 Total: -4.49 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.03 Total: -51.81 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.07 Total: -14.27 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.16 -9.68 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186408063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.073 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds