Wall clock time and date at job start Tue Mar 31 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 H 1.09001 * 109.46950 * 55.01033 * 3 2 1 5 5 C 1.50706 * 109.47023 * 175.00307 * 3 2 1 6 6 H 1.07995 * 119.99761 * 120.00317 * 5 3 2 7 7 C 1.37879 * 119.99904 * 300.00499 * 5 3 2 8 8 N 1.31515 * 120.00145 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46951 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47048 * 119.99543 * 9 7 5 12 12 H 1.48492 * 109.47063 * 240.00017 * 9 7 5 13 13 N 1.46496 * 109.47575 * 295.00182 * 3 2 1 14 14 C 1.34777 * 119.99614 * 84.99689 * 13 3 2 15 15 O 1.21588 * 120.00178 * 0.02562 * 14 13 3 16 16 N 1.34784 * 119.99964 * 180.02562 * 14 13 3 17 17 C 1.46493 * 119.99864 * 179.73002 * 16 14 13 18 18 H 1.09003 * 109.47333 * 324.99821 * 17 16 14 19 19 C 1.52999 * 109.47638 * 84.99998 * 17 16 14 20 20 C 1.53006 * 109.47135 * 204.99938 * 17 16 14 21 21 C 1.53000 * 109.46627 * 300.00030 * 20 17 16 22 22 C 1.53007 * 109.46876 * 179.97438 * 21 20 17 23 23 C 1.53003 * 109.46932 * 59.99923 * 22 21 20 24 24 C 1.53005 * 109.47141 * 299.99955 * 23 22 21 25 25 C 1.52994 * 109.47460 * 179.97438 * 20 17 16 26 26 H 1.09007 * 109.46395 * 299.99527 * 1 2 3 27 27 H 1.08996 * 109.47009 * 59.99233 * 1 2 3 28 28 H 1.08999 * 109.47039 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46395 * 240.00472 * 2 1 3 30 30 H 1.08997 * 109.47491 * 120.00982 * 2 1 3 31 31 H 0.97002 * 119.99954 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00499 * 265.00266 * 13 3 2 33 33 H 0.97000 * 119.99339 * 0.02562 * 16 14 13 34 34 H 1.09003 * 109.46886 * 300.00173 * 19 17 16 35 35 H 1.09003 * 109.46903 * 59.99559 * 19 17 16 36 36 H 1.08994 * 109.47399 * 179.97438 * 19 17 16 37 37 H 1.09004 * 109.46741 * 59.99614 * 20 17 16 38 38 H 1.09001 * 109.47655 * 299.99545 * 21 20 17 39 39 H 1.09003 * 109.47466 * 59.99905 * 21 20 17 40 40 H 1.09001 * 109.46845 * 300.00333 * 22 21 20 41 41 H 1.08996 * 109.47219 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.46773 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46765 * 60.00033 * 23 22 21 44 44 H 1.08994 * 109.46794 * 300.00104 * 24 23 22 45 45 H 1.08994 * 109.46994 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.47197 * 299.99998 * 25 20 17 47 47 H 1.09003 * 109.47176 * 59.99585 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8782 1.2278 8 7 3.4063 0.3372 2.1732 9 14 6.0051 0.8798 1.3809 10 1 6.5989 1.5440 0.1928 11 1 6.4002 1.6154 2.6089 12 1 6.4962 -0.5192 1.4623 13 7 1.6525 2.0976 -1.2517 14 6 0.4351 2.6644 -1.3667 15 8 -0.3412 2.6325 -0.4315 16 7 0.0783 3.2667 -2.5185 17 6 -1.2471 3.8777 -2.6456 18 1 -1.9744 3.2870 -2.0886 19 6 -1.2088 5.3006 -2.0845 20 6 -1.6489 3.9221 -4.1213 21 6 -0.6279 4.7513 -4.9030 22 6 -1.0294 4.7952 -6.3788 23 6 -2.4137 5.4329 -6.5120 24 6 -3.4346 4.6037 -5.7302 25 6 -3.0333 4.5596 -4.2539 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 3.8295 -0.0613 2.9497 32 1 2.2719 2.1233 -1.9977 33 1 0.6976 3.2918 -3.2647 34 1 -0.9225 5.2689 -1.0332 35 1 -0.4814 5.8913 -2.6414 36 1 -2.1948 5.7553 -2.1794 37 1 -1.6762 2.9083 -4.5210 38 1 -0.6006 5.7650 -4.5033 39 1 0.3582 4.2967 -4.8084 40 1 -1.0565 3.7813 -6.7782 41 1 -0.3023 5.3862 -6.9356 42 1 -2.6999 5.4638 -7.5633 43 1 -2.3866 6.4467 -6.1124 44 1 -3.4616 3.5900 -6.1297 45 1 -4.4209 5.0578 -5.8254 46 1 -3.7604 3.9685 -3.6971 47 1 -3.0064 5.5732 -3.8540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186408063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:00 Heat of formation + Delta-G solvation = -86.366212 kcal Electronic energy + Delta-G solvation = -23359.954654 eV Core-core repulsion = 20154.375419 eV Total energy + Delta-G solvation = -3205.579235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.21053 -39.76445 -37.19298 -35.86092 -34.30995 -33.19033 -31.90123 -31.45089 -29.47222 -28.68241 -25.36175 -24.69937 -23.60134 -22.42465 -21.46976 -21.21433 -20.04112 -19.65618 -18.02663 -17.30889 -16.73841 -16.31316 -16.09232 -15.78751 -15.35599 -15.06856 -14.96921 -14.82907 -14.52343 -14.29361 -13.60483 -13.41196 -13.31581 -13.16245 -13.12954 -12.95784 -12.85046 -12.77979 -12.68834 -12.17449 -12.12229 -12.02316 -11.81234 -11.68267 -11.57213 -11.24205 -11.04120 -10.96778 -10.88734 -10.81531 -10.51870 -9.99421 -9.40999 -8.14025 -6.30912 1.44939 1.45693 1.57675 2.04332 2.43025 2.47340 3.15297 3.65284 3.70979 3.80711 3.90073 4.22164 4.32495 4.37299 4.51512 4.51931 4.57413 4.60435 4.64733 4.67267 4.71947 4.77839 4.81326 4.87659 5.03191 5.05806 5.11907 5.20585 5.24105 5.27967 5.33687 5.33972 5.44222 5.46167 5.48456 5.50327 5.58978 5.67582 5.67703 5.78111 5.82931 5.93943 6.21377 6.44103 6.78676 7.37316 7.46668 7.93354 8.91755 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029246 B = 0.003533 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.174064 B = 7923.715985 C = 8348.485329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.297 3.703 4 H -0.005 1.005 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.725 5.725 14 C 0.692 3.308 15 O -0.635 6.635 16 N -0.734 5.734 17 C 0.166 3.834 18 H 0.057 0.943 19 C -0.159 4.159 20 C -0.081 4.081 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.113 4.113 26 H 0.023 0.977 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.397 0.603 33 H 0.403 0.597 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 9.274 -18.956 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.012 0.988 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.378 5.378 14 C 0.392 3.608 15 O -0.517 6.517 16 N -0.392 5.392 17 C 0.060 3.940 18 H 0.075 0.925 19 C -0.217 4.217 20 C -0.100 4.100 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.151 4.151 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.231 0.769 33 H 0.240 0.760 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.109 9.148 -17.923 22.519 hybrid contribution 1.384 -0.259 0.201 1.422 sum -8.724 8.890 -17.722 21.661 Atomic orbital electron populations 1.21625 0.97098 0.98721 1.00150 1.21793 0.93672 0.99420 1.01077 1.18186 0.93280 0.88708 0.80527 0.98758 1.21615 0.91467 1.38704 1.06621 0.91156 1.25778 1.03327 0.94445 0.95023 1.70067 1.36960 1.38471 1.09884 0.85311 0.79113 0.77807 0.78159 1.18471 1.21060 1.20427 1.45417 1.14575 1.59628 1.18133 1.16275 0.82540 0.78455 0.83501 1.90847 1.53329 1.67004 1.40548 1.45189 1.18555 1.61165 1.14242 1.20786 0.82938 0.93377 0.96858 0.92523 1.22232 1.03099 0.96549 0.99805 1.21324 0.96522 1.00285 0.91903 1.21653 0.97765 1.00416 0.95520 1.21519 0.97208 1.01155 0.95571 1.21542 0.94582 0.99244 1.00221 1.21516 0.99007 1.00487 0.94348 1.21613 0.94780 1.01325 0.97382 0.95797 0.93933 0.93854 0.94221 0.91068 0.92645 0.76857 0.76005 0.95608 0.91109 0.89909 0.91162 0.91096 0.92106 0.92177 0.91345 0.91437 0.91800 0.92252 0.91190 0.92242 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.51 71.98 0.61 -4.99 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.96 16 3 C 0.30 15.66 2.24 44.25 0.10 15.76 16 4 H -0.01 -0.35 7.58 -2.39 -0.02 -0.36 16 5 C -0.55 -29.35 8.73 25.60 0.22 -29.12 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.77 5.29 84.66 0.45 1.22 16 8 N -0.92 -53.10 11.29 21.45 0.24 -52.86 16 9 Si 0.97 42.51 29.54 68.60 2.03 44.54 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 13 N -0.72 -30.94 5.03 -461.40 -2.32 -33.26 16 14 C 0.69 28.60 7.10 179.05 1.27 29.87 16 15 O -0.64 -31.83 13.14 -3.99 -0.05 -31.89 16 16 N -0.73 -21.75 5.00 -457.80 -2.29 -24.04 16 17 C 0.17 4.29 2.40 44.99 0.11 4.40 16 18 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 19 C -0.16 -3.91 8.78 71.98 0.63 -3.28 16 20 C -0.08 -1.48 2.18 -10.79 -0.02 -1.50 16 21 C -0.12 -1.76 4.68 30.60 0.14 -1.62 16 22 C -0.12 -1.49 5.92 30.60 0.18 -1.31 16 23 C -0.12 -1.38 5.92 30.60 0.18 -1.19 16 24 C -0.12 -1.48 5.92 30.61 0.18 -1.29 16 25 C -0.11 -1.76 4.86 30.61 0.15 -1.61 16 26 H 0.02 1.21 7.84 -2.38 -0.02 1.19 16 27 H 0.04 1.96 5.64 -2.39 -0.01 1.94 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 31 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.40 14.40 8.55 -92.71 -0.79 13.60 16 33 H 0.40 9.50 6.88 -92.71 -0.64 8.87 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.51 6.43 -2.39 -0.02 1.50 16 36 H 0.08 1.65 6.43 -2.39 -0.02 1.64 16 37 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.07 1.07 6.43 -2.39 -0.02 1.06 16 39 H 0.06 0.93 6.51 -2.39 -0.02 0.91 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 1.07 6.43 -2.39 -0.02 1.06 16 Total: -1.00 -67.05 351.17 1.50 -65.54 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.48 Total: 32.59 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 4.37 Total: -0.62 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.37 Total: -110.16 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.05 Total: -31.89 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -67.05 1.50 -65.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186408063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.824 kcal (2) G-P(sol) polarization free energy of solvation -67.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds