Wall clock time and date at job start Tue Mar 31 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46521 * 2 1 4 4 H 1.08994 * 109.47075 * 305.68732 * 3 2 1 5 5 C 1.50708 * 109.46694 * 185.69059 * 3 2 1 6 6 H 1.07999 * 119.99833 * 275.00077 * 5 3 2 7 7 C 1.37873 * 119.99972 * 95.00391 * 5 3 2 8 8 N 1.31512 * 120.00092 * 184.83100 * 7 5 3 9 9 Si 1.86805 * 120.00174 * 4.82647 * 7 5 3 10 10 H 1.48499 * 109.46734 * 84.86022 * 9 7 5 11 11 H 1.48497 * 109.47076 * 204.86363 * 9 7 5 12 12 H 1.48500 * 109.46979 * 324.86326 * 9 7 5 13 13 N 1.46496 * 109.47301 * 65.69174 * 3 2 1 14 14 C 1.34773 * 119.99953 * 274.99515 * 13 3 2 15 15 O 1.21591 * 119.99743 * 0.02562 * 14 13 3 16 16 N 1.34775 * 120.00340 * 179.72847 * 14 13 3 17 17 C 1.46500 * 120.00406 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.46638 * 324.99454 * 17 16 14 19 19 C 1.52997 * 109.47307 * 84.99723 * 17 16 14 20 20 C 1.52999 * 109.47257 * 205.00099 * 17 16 14 21 21 C 1.53008 * 109.46808 * 299.99505 * 20 17 16 22 22 C 1.52999 * 109.46808 * 180.02562 * 21 20 17 23 23 C 1.52992 * 109.47229 * 60.00466 * 22 21 20 24 24 C 1.53000 * 109.46987 * 299.99288 * 23 22 21 25 25 C 1.52992 * 109.47229 * 179.97438 * 20 17 16 26 26 H 1.08998 * 109.46589 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47684 * 300.00060 * 1 2 3 28 28 H 1.09000 * 109.46709 * 60.00815 * 1 2 3 29 29 H 1.08990 * 109.47261 * 240.00133 * 2 1 3 30 30 H 1.09000 * 109.46709 * 119.99185 * 2 1 3 31 31 H 0.96995 * 120.00231 * 180.02562 * 8 7 5 32 32 H 0.97004 * 120.00299 * 95.00292 * 13 3 2 33 33 H 0.96999 * 119.99911 * 359.97438 * 16 14 13 34 34 H 1.09005 * 109.46974 * 299.99963 * 19 17 16 35 35 H 1.08988 * 109.47222 * 60.00049 * 19 17 16 36 36 H 1.09003 * 109.46979 * 180.02562 * 19 17 16 37 37 H 1.09001 * 109.47521 * 59.99578 * 20 17 16 38 38 H 1.09001 * 109.47139 * 300.00307 * 21 20 17 39 39 H 1.09004 * 109.47046 * 59.99913 * 21 20 17 40 40 H 1.08995 * 109.47278 * 299.99409 * 22 21 20 41 41 H 1.09005 * 109.46560 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47146 * 179.97438 * 23 22 21 43 43 H 1.09004 * 109.47682 * 59.99340 * 23 22 21 44 44 H 1.08991 * 109.47544 * 300.00555 * 24 23 22 45 45 H 1.09003 * 109.47320 * 179.97438 * 24 23 22 46 46 H 1.09005 * 109.47150 * 299.99394 * 25 20 17 47 47 H 1.09004 * 109.47682 * 59.99340 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4450 -0.1409 6 1 4.1650 1.3336 0.7331 7 6 4.1157 1.5895 -1.3855 8 7 5.4205 1.4965 -1.5216 9 14 3.0419 1.9171 -2.8786 10 1 2.7754 3.3740 -2.9864 11 1 3.7403 1.4495 -4.1028 12 1 1.7563 1.1881 -2.7332 13 7 1.6666 2.0925 1.2587 14 6 0.4507 2.6589 1.3899 15 8 -0.3365 2.6300 0.4637 16 7 0.1052 3.2520 2.5498 17 6 -1.2167 3.8672 2.6926 18 1 -1.5171 4.3076 1.7419 19 6 -2.2336 2.8009 3.1047 20 6 -1.1587 4.9578 3.7641 21 6 -0.7370 4.3395 5.0987 22 6 -0.6796 5.4300 6.1703 23 6 -2.0603 6.0719 6.3193 24 6 -2.4819 6.6902 4.9848 25 6 -2.5390 5.6006 3.9128 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 5.8252 1.5986 -2.3972 32 1 2.2946 2.1153 1.9977 33 1 0.7314 3.2710 3.2902 34 1 -2.2750 2.0240 2.3412 35 1 -1.9333 2.3605 4.0553 36 1 -3.2173 3.2586 3.2105 37 1 -0.4342 5.7174 3.4706 38 1 -1.4615 3.5799 5.3922 39 1 0.2465 3.8817 4.9924 40 1 0.0447 6.1898 5.8770 41 1 -0.3787 4.9896 7.1210 42 1 -2.0195 6.8484 7.0831 43 1 -2.7846 5.3119 6.6126 44 1 -1.7578 7.4500 4.6915 45 1 -3.4659 7.1471 5.0908 46 1 -2.8390 6.0412 2.9620 47 1 -3.2639 4.8412 4.2062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186408064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:04 Heat of formation + Delta-G solvation = -68.850325 kcal Electronic energy + Delta-G solvation = -23460.308178 eV Core-core repulsion = 20255.488489 eV Total energy + Delta-G solvation = -3204.819689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.96762 -38.70390 -35.73601 -34.47157 -32.42512 -31.93930 -31.00837 -30.43472 -28.50168 -27.28841 -24.20062 -22.96735 -22.67151 -21.25951 -20.37214 -19.53360 -19.20271 -18.18553 -16.48799 -16.06133 -15.38000 -14.97857 -14.73254 -14.58777 -14.38938 -14.32968 -13.98731 -13.26884 -12.99984 -12.73706 -12.57627 -12.46612 -12.34341 -12.17534 -11.93184 -11.80274 -11.75842 -11.34988 -11.10541 -10.93384 -10.89535 -10.62560 -10.60280 -10.52994 -10.26935 -10.08899 -9.91587 -9.79154 -9.31946 -9.11724 -8.66223 -8.62564 -7.81173 -6.19812 -4.22710 3.28698 3.37794 3.42086 3.46677 3.97869 4.36915 4.47507 4.51292 4.54719 4.91660 4.96300 5.06524 5.10386 5.25771 5.28232 5.30458 5.33146 5.41485 5.50821 5.53244 5.66240 5.79647 5.85989 5.93042 5.95691 5.97427 6.04737 6.09197 6.14302 6.17058 6.20704 6.24760 6.34370 6.47379 6.72496 6.85175 6.99238 7.06159 7.11411 7.32131 7.43859 7.70946 7.71182 8.34941 8.79951 8.92727 9.36867 9.47550 10.91991 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.003836 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.634204 B = 7297.935779 C = 7562.383965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.254 3.746 4 H 0.049 0.951 5 C -0.528 4.528 6 H 0.077 0.923 7 C 0.081 3.919 8 N -0.891 5.891 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.259 1.259 13 N -0.723 5.723 14 C 0.694 3.306 15 O -0.600 6.600 16 N -0.753 5.753 17 C 0.167 3.833 18 H 0.084 0.916 19 C -0.165 4.165 20 C -0.094 4.094 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.113 4.113 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.267 0.733 32 H 0.387 0.613 33 H 0.389 0.611 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.450 7.317 15.052 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.151 3.849 4 H 0.067 0.933 5 C -0.567 4.567 6 H 0.095 0.905 7 C -0.123 4.123 8 N -0.527 5.527 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.375 5.375 14 C 0.394 3.606 15 O -0.480 6.480 16 N -0.410 5.410 17 C 0.061 3.939 18 H 0.102 0.898 19 C -0.223 4.223 20 C -0.113 4.113 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.151 4.151 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.220 0.780 33 H 0.223 0.777 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.986 7.271 14.008 21.764 hybrid contribution 0.255 0.185 -0.126 0.339 sum -14.731 7.456 13.882 21.571 Atomic orbital electron populations 1.21876 0.97393 0.98453 1.02193 1.22078 0.93746 0.99681 1.00935 1.19002 0.95011 0.88700 0.82176 0.93273 1.21041 0.88874 1.51386 0.95354 0.90482 1.24932 0.94862 0.93721 0.98815 1.69884 1.09776 1.48603 1.24452 0.86891 0.81297 0.79621 0.82117 1.19939 1.21320 1.18281 1.45867 1.13593 1.59349 1.18657 1.16202 0.83193 0.78590 0.82588 1.90856 1.51810 1.65471 1.39818 1.45350 1.17438 1.62979 1.15219 1.20640 0.82449 0.92149 0.98628 0.89796 1.22293 0.98626 0.99766 1.01659 1.21424 0.97956 0.97173 0.94709 1.21650 1.01456 0.97977 0.94349 1.21532 0.97170 0.98291 0.98725 1.21530 0.97158 0.99820 0.97153 1.21518 1.01132 0.97939 0.95052 1.21590 0.96519 0.98056 0.98967 0.95476 0.92963 0.93203 0.92299 0.93222 0.92307 0.78045 0.77673 0.92052 0.92616 0.92089 0.90687 0.91362 0.92023 0.92030 0.92160 0.92363 0.92102 0.92050 0.92148 0.91754 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.53 37.16 0.32 -2.62 16 2 C -0.13 -2.78 5.59 -26.73 -0.15 -2.93 16 3 C 0.25 6.11 1.89 -69.08 -0.13 5.98 16 4 H 0.05 1.30 4.73 -51.93 -0.25 1.06 16 5 C -0.53 -14.33 9.05 -34.44 -0.31 -14.64 16 6 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 8 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 9 Si 0.87 21.93 26.99 -169.99 -4.59 17.34 16 10 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.26 -6.41 6.82 56.52 0.39 -6.02 16 13 N -0.72 -14.75 5.03 -59.81 -0.30 -15.05 16 14 C 0.69 13.53 7.13 -86.92 -0.62 12.91 16 15 O -0.60 -13.73 13.14 5.29 0.07 -13.66 16 16 N -0.75 -10.94 5.00 -58.68 -0.29 -11.23 16 17 C 0.17 2.12 2.40 -67.93 -0.16 1.95 16 18 H 0.08 1.27 7.58 -51.93 -0.39 0.87 16 19 C -0.17 -1.95 8.78 37.16 0.33 -1.62 16 20 C -0.09 -0.91 2.18 -90.62 -0.20 -1.10 16 21 C -0.12 -1.00 4.68 -26.73 -0.13 -1.12 16 22 C -0.12 -0.92 5.92 -26.74 -0.16 -1.07 16 23 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 24 C -0.12 -0.89 5.92 -26.75 -0.16 -1.05 16 25 C -0.11 -0.96 4.85 -26.76 -0.13 -1.09 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 1.08 5.63 -51.93 -0.29 0.79 16 28 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.39 7.02 8.61 -40.82 -0.35 6.67 16 33 H 0.39 4.73 6.88 -40.82 -0.28 4.45 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.60 6.43 -51.94 -0.33 0.26 16 36 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 39 H 0.06 0.53 6.51 -51.93 -0.34 0.20 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -30.97 351.07 -9.10 -40.06 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -8.29 Total: 8.12 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.76 Total: -5.22 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.18 Total: -51.94 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.07 Total: -13.66 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.59 Total: 17.34 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.97 -9.10 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186408064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.785 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds