Wall clock time and date at job start Tue Mar 31 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46521 * 2 1 4 4 H 1.08994 * 109.47075 * 305.68732 * 3 2 1 5 5 C 1.50708 * 109.46694 * 185.69059 * 3 2 1 6 6 H 1.07999 * 119.99833 * 275.00077 * 5 3 2 7 7 C 1.37873 * 119.99972 * 95.00391 * 5 3 2 8 8 N 1.31512 * 120.00092 * 184.83100 * 7 5 3 9 9 Si 1.86805 * 120.00174 * 4.82647 * 7 5 3 10 10 H 1.48499 * 109.46734 * 84.86022 * 9 7 5 11 11 H 1.48497 * 109.47076 * 204.86363 * 9 7 5 12 12 H 1.48500 * 109.46979 * 324.86326 * 9 7 5 13 13 N 1.46496 * 109.47301 * 65.69174 * 3 2 1 14 14 C 1.34773 * 119.99953 * 274.99515 * 13 3 2 15 15 O 1.21591 * 119.99743 * 0.02562 * 14 13 3 16 16 N 1.34775 * 120.00340 * 179.72847 * 14 13 3 17 17 C 1.46500 * 120.00406 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.46638 * 324.99454 * 17 16 14 19 19 C 1.52997 * 109.47307 * 84.99723 * 17 16 14 20 20 C 1.52999 * 109.47257 * 205.00099 * 17 16 14 21 21 C 1.53008 * 109.46808 * 299.99505 * 20 17 16 22 22 C 1.52999 * 109.46808 * 180.02562 * 21 20 17 23 23 C 1.52992 * 109.47229 * 60.00466 * 22 21 20 24 24 C 1.53000 * 109.46987 * 299.99288 * 23 22 21 25 25 C 1.52992 * 109.47229 * 179.97438 * 20 17 16 26 26 H 1.08998 * 109.46589 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47684 * 300.00060 * 1 2 3 28 28 H 1.09000 * 109.46709 * 60.00815 * 1 2 3 29 29 H 1.08990 * 109.47261 * 240.00133 * 2 1 3 30 30 H 1.09000 * 109.46709 * 119.99185 * 2 1 3 31 31 H 0.96995 * 120.00231 * 180.02562 * 8 7 5 32 32 H 0.97004 * 120.00299 * 95.00292 * 13 3 2 33 33 H 0.96999 * 119.99911 * 359.97438 * 16 14 13 34 34 H 1.09005 * 109.46974 * 299.99963 * 19 17 16 35 35 H 1.08988 * 109.47222 * 60.00049 * 19 17 16 36 36 H 1.09003 * 109.46979 * 180.02562 * 19 17 16 37 37 H 1.09001 * 109.47521 * 59.99578 * 20 17 16 38 38 H 1.09001 * 109.47139 * 300.00307 * 21 20 17 39 39 H 1.09004 * 109.47046 * 59.99913 * 21 20 17 40 40 H 1.08995 * 109.47278 * 299.99409 * 22 21 20 41 41 H 1.09005 * 109.46560 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47146 * 179.97438 * 23 22 21 43 43 H 1.09004 * 109.47682 * 59.99340 * 23 22 21 44 44 H 1.08991 * 109.47544 * 300.00555 * 24 23 22 45 45 H 1.09003 * 109.47320 * 179.97438 * 24 23 22 46 46 H 1.09005 * 109.47150 * 299.99394 * 25 20 17 47 47 H 1.09004 * 109.47682 * 59.99340 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4450 -0.1409 6 1 4.1650 1.3336 0.7331 7 6 4.1157 1.5895 -1.3855 8 7 5.4205 1.4965 -1.5216 9 14 3.0419 1.9171 -2.8786 10 1 2.7754 3.3740 -2.9864 11 1 3.7403 1.4495 -4.1028 12 1 1.7563 1.1881 -2.7332 13 7 1.6666 2.0925 1.2587 14 6 0.4507 2.6589 1.3899 15 8 -0.3365 2.6300 0.4637 16 7 0.1052 3.2520 2.5498 17 6 -1.2167 3.8672 2.6926 18 1 -1.5171 4.3076 1.7419 19 6 -2.2336 2.8009 3.1047 20 6 -1.1587 4.9578 3.7641 21 6 -0.7370 4.3395 5.0987 22 6 -0.6796 5.4300 6.1703 23 6 -2.0603 6.0719 6.3193 24 6 -2.4819 6.6902 4.9848 25 6 -2.5390 5.6006 3.9128 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 5.8252 1.5986 -2.3972 32 1 2.2946 2.1153 1.9977 33 1 0.7314 3.2710 3.2902 34 1 -2.2750 2.0240 2.3412 35 1 -1.9333 2.3605 4.0553 36 1 -3.2173 3.2586 3.2105 37 1 -0.4342 5.7174 3.4706 38 1 -1.4615 3.5799 5.3922 39 1 0.2465 3.8817 4.9924 40 1 0.0447 6.1898 5.8770 41 1 -0.3787 4.9896 7.1210 42 1 -2.0195 6.8484 7.0831 43 1 -2.7846 5.3119 6.6126 44 1 -1.7578 7.4500 4.6915 45 1 -3.4659 7.1471 5.0908 46 1 -2.8390 6.0412 2.9620 47 1 -3.2639 4.8412 4.2062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186408064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:03 Heat of formation + Delta-G solvation = -88.427883 kcal Electronic energy + Delta-G solvation = -23461.157125 eV Core-core repulsion = 20255.488489 eV Total energy + Delta-G solvation = -3205.668636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25404 -39.79852 -37.23979 -35.86208 -34.38903 -33.50636 -31.95112 -31.47038 -29.55669 -29.07550 -25.27066 -24.51875 -23.61856 -22.45991 -21.46217 -21.28938 -20.06632 -19.83274 -18.34206 -17.57614 -16.47765 -16.39487 -16.19583 -15.76620 -15.57575 -15.05152 -14.96555 -14.77988 -14.76660 -14.27686 -13.83343 -13.74038 -13.54019 -13.30870 -13.13660 -12.96845 -12.92136 -12.77895 -12.54188 -12.35277 -12.15087 -11.86734 -11.82292 -11.70230 -11.62966 -11.25098 -11.18923 -11.01056 -10.89880 -10.82167 -10.81756 -10.03404 -9.46155 -8.38342 -6.43382 1.29287 1.33575 1.45560 1.99988 2.27979 2.40801 2.99699 3.60736 3.70579 3.80129 3.89297 4.21757 4.32021 4.34894 4.36808 4.45100 4.50873 4.57167 4.58062 4.64419 4.67302 4.71887 4.80312 4.85400 4.88357 5.03738 5.08337 5.12513 5.20549 5.23292 5.29824 5.31140 5.32909 5.33495 5.43729 5.45371 5.46420 5.49981 5.58596 5.67050 5.77672 5.87684 6.06703 6.42107 6.62616 7.23203 7.39900 7.86402 8.76786 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.003836 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.634204 B = 7297.935779 C = 7562.383965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 C 0.261 3.739 4 H 0.027 0.973 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.925 3.075 10 H -0.277 1.277 11 H -0.277 1.277 12 H -0.256 1.256 13 N -0.724 5.724 14 C 0.693 3.307 15 O -0.634 6.634 16 N -0.735 5.735 17 C 0.165 3.835 18 H 0.057 0.943 19 C -0.157 4.157 20 C -0.083 4.083 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.112 4.112 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.270 0.730 32 H 0.398 0.602 33 H 0.403 0.597 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.126 7.590 16.685 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.156 3.844 4 H 0.045 0.955 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.750 3.250 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.180 1.180 13 N -0.376 5.376 14 C 0.393 3.607 15 O -0.516 6.516 16 N -0.392 5.392 17 C 0.060 3.940 18 H 0.075 0.925 19 C -0.215 4.215 20 C -0.103 4.103 21 C -0.153 4.153 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.155 4.155 25 C -0.150 4.150 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.233 0.767 33 H 0.240 0.760 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.671 7.562 15.700 24.116 hybrid contribution 0.757 0.135 -0.533 0.936 sum -15.913 7.697 15.167 23.292 Atomic orbital electron populations 1.21721 0.95894 0.99878 1.01130 1.21989 0.94961 0.98212 1.01022 1.18718 0.92815 0.89856 0.82993 0.95550 1.21234 0.90396 1.50155 0.94503 0.92620 1.25567 0.95722 0.93997 1.01317 1.69973 1.11177 1.50514 1.25243 0.86074 0.79978 0.79154 0.79748 1.20270 1.20255 1.18010 1.45512 1.14491 1.59723 1.17922 1.16266 0.82402 0.78567 0.83418 1.90836 1.52627 1.66693 1.41414 1.45221 1.18488 1.61457 1.14003 1.20802 0.81474 0.93170 0.98585 0.92450 1.22219 0.99453 0.98627 1.01246 1.21335 0.98804 0.95851 0.94273 1.21647 1.01459 0.98380 0.93776 1.21522 0.97534 0.97871 0.98653 1.21532 0.96809 1.00146 0.97043 1.21507 1.01652 0.97444 0.94850 1.21590 0.95610 0.98542 0.99258 0.92722 0.93201 0.95067 0.93224 0.92113 0.92066 0.76735 0.75997 0.95002 0.91075 0.90016 0.91541 0.90812 0.92158 0.92453 0.91324 0.91549 0.91612 0.92486 0.91146 0.92280 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.53 71.98 0.61 -4.55 16 2 C -0.12 -5.35 5.59 30.60 0.17 -5.18 16 3 C 0.26 12.51 1.89 44.25 0.08 12.59 16 4 H 0.03 1.41 4.73 -2.39 -0.01 1.40 16 5 C -0.52 -28.70 9.05 25.60 0.23 -28.47 16 6 H 0.06 3.23 8.06 -2.91 -0.02 3.21 16 7 C 0.03 1.96 5.47 84.65 0.46 2.42 16 8 N -0.93 -55.94 13.96 21.45 0.30 -55.64 16 9 Si 0.93 45.60 26.99 68.60 1.85 47.45 16 10 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.26 -12.41 6.82 99.48 0.68 -11.73 16 13 N -0.72 -29.20 5.03 -461.41 -2.32 -31.52 16 14 C 0.69 26.69 7.13 179.06 1.28 27.97 16 15 O -0.63 -29.03 13.14 -4.00 -0.05 -29.09 16 16 N -0.73 -20.57 5.00 -457.82 -2.29 -22.86 16 17 C 0.16 4.00 2.40 44.99 0.11 4.11 16 18 H 0.06 1.73 7.58 -2.39 -0.02 1.71 16 19 C -0.16 -3.45 8.78 71.98 0.63 -2.82 16 20 C -0.08 -1.48 2.18 -10.79 -0.02 -1.50 16 21 C -0.12 -1.69 4.68 30.60 0.14 -1.54 16 22 C -0.12 -1.51 5.92 30.59 0.18 -1.33 16 23 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 24 C -0.12 -1.48 5.92 30.58 0.18 -1.30 16 25 C -0.11 -1.67 4.85 30.58 0.15 -1.52 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 27 H 0.05 2.01 5.63 -2.39 -0.01 1.99 16 28 H 0.03 1.34 7.88 -2.39 -0.02 1.32 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.40 14.18 8.61 -92.71 -0.80 13.39 16 33 H 0.40 9.14 6.88 -92.71 -0.64 8.50 16 34 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 1.34 6.43 -2.39 -0.02 1.32 16 36 H 0.08 1.45 6.43 -2.39 -0.02 1.43 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.03 6.43 -2.39 -0.02 1.01 16 39 H 0.06 0.90 6.51 -2.38 -0.02 0.88 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.08 1.02 6.43 -2.38 -0.02 1.01 16 Total: -1.00 -66.72 351.07 1.37 -65.35 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.51 Total: 28.60 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 4.39 Total: -2.29 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -4.31 Total: -110.03 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.05 Total: -29.09 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.85 Total: 47.45 kcal Total: -66.72 1.37 -65.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186408064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.075 kcal (2) G-P(sol) polarization free energy of solvation -66.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds