Wall clock time and date at job start Tue Mar 31 2020 06:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47053 * 2 1 4 4 N 1.46499 * 109.47479 * 180.02562 * 3 2 1 5 5 C 1.46499 * 120.00136 * 270.00443 * 4 3 2 6 6 C 1.50696 * 109.47559 * 269.99591 * 5 4 3 7 7 H 1.08002 * 119.99386 * 359.97438 * 6 5 4 8 8 C 1.37867 * 120.00392 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00408 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00114 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.46959 * 60.00195 * 10 8 6 12 12 H 1.48498 * 109.47245 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47130 * 300.00371 * 10 8 6 14 14 C 1.34774 * 119.99899 * 90.00188 * 4 3 2 15 15 O 1.21592 * 120.00301 * 180.02562 * 14 4 3 16 16 N 1.34777 * 119.99902 * 0.02562 * 14 4 3 17 17 C 1.46506 * 119.99873 * 179.97438 * 16 14 4 18 18 C 1.52999 * 109.46684 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47645 * 294.99878 * 18 17 16 20 20 C 1.52989 * 109.47252 * 179.97438 * 19 18 17 21 21 C 1.53009 * 109.47149 * 60.00403 * 20 19 18 22 22 C 1.52993 * 109.46793 * 300.00111 * 21 20 19 23 23 C 1.52989 * 109.47704 * 59.99856 * 22 21 20 24 24 H 1.09005 * 109.47055 * 299.99381 * 1 2 3 25 25 H 1.08994 * 109.47266 * 59.99778 * 1 2 3 26 26 H 1.09001 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47561 * 240.00478 * 2 1 3 28 28 H 1.09001 * 109.47624 * 120.00091 * 2 1 3 29 29 H 1.09005 * 109.46685 * 60.00392 * 3 2 1 30 30 H 1.08999 * 109.47707 * 300.00378 * 3 2 1 31 31 H 1.09003 * 109.47296 * 29.99923 * 5 4 3 32 32 H 1.09010 * 109.46989 * 149.99851 * 5 4 3 33 33 H 0.96998 * 120.00607 * 180.02562 * 9 8 6 34 34 H 0.96995 * 120.00018 * 0.27633 * 16 14 4 35 35 H 1.09000 * 109.47212 * 300.00355 * 17 16 14 36 36 H 1.09001 * 109.46577 * 60.00430 * 17 16 14 37 37 H 1.09001 * 109.47317 * 55.00694 * 18 17 16 38 38 H 1.08993 * 109.47092 * 300.00720 * 19 18 17 39 39 H 1.09006 * 109.46455 * 60.00000 * 19 18 17 40 40 H 1.08993 * 109.47691 * 300.00392 * 20 19 18 41 41 H 1.08997 * 109.47364 * 179.97438 * 20 19 18 42 42 H 1.08998 * 109.46851 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.46642 * 59.99760 * 21 20 19 44 44 H 1.09001 * 109.47239 * 299.99283 * 22 21 20 45 45 H 1.09007 * 109.46997 * 180.02562 * 22 21 20 46 46 H 1.08999 * 109.47464 * 179.97438 * 23 22 21 47 47 H 1.09001 * 109.47240 * 59.99427 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.4894 2.8631 1.7030 7 1 4.1385 3.6841 1.0953 8 6 5.1672 3.1148 2.8769 9 7 5.5948 2.1151 3.6167 10 14 5.4781 4.8759 3.4168 11 1 4.1803 5.5755 3.5948 12 1 6.2213 4.8756 4.7024 13 1 6.2803 5.5765 2.3820 14 6 4.1783 1.4429 -1.1681 15 8 5.3942 1.4425 -1.1687 16 7 3.5039 1.4436 -2.3350 17 6 4.2358 1.4444 -3.6041 18 6 3.2410 1.4457 -4.7665 19 6 2.4458 0.1386 -4.7588 20 6 1.4506 0.1403 -5.9208 21 6 2.2104 0.2672 -7.2428 22 6 3.0056 1.5742 -7.2505 23 6 4.0008 1.5726 -6.0885 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9565 -0.8899 31 1 3.6493 0.9284 2.0276 32 1 5.1904 0.9286 1.1369 33 1 6.0714 2.2921 4.4428 34 1 2.5339 1.4479 -2.3346 35 1 4.8625 2.3345 -3.6615 36 1 4.8625 0.5545 -3.6626 37 1 2.5573 2.2877 -4.6586 38 1 3.1295 -0.7033 -4.8667 39 1 1.9042 0.0485 -3.8171 40 1 0.7669 0.9822 -5.8125 41 1 0.8844 -0.7910 -5.9156 42 1 1.5014 0.2679 -8.0707 43 1 2.8941 -0.5748 -7.3511 44 1 2.3219 2.4162 -7.1422 45 1 3.5466 1.6648 -8.1926 46 1 4.5677 2.5036 -6.0943 47 1 4.6845 0.7306 -6.1968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186862776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:29 Heat of formation + Delta-G solvation = -66.529287 kcal Electronic energy + Delta-G solvation = -23161.393981 eV Core-core repulsion = 19956.674940 eV Total energy + Delta-G solvation = -3204.719041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.64799 -38.57619 -35.65483 -34.47127 -33.02433 -31.94090 -31.11978 -30.77810 -27.47881 -25.89097 -25.01371 -22.89935 -22.51867 -21.46785 -21.16198 -19.98860 -19.05297 -17.33899 -16.33432 -15.87174 -15.53183 -14.97131 -14.63411 -14.48853 -14.31310 -14.26200 -13.99257 -13.46469 -13.40309 -13.08422 -12.59590 -12.37195 -12.25940 -12.12368 -11.82355 -11.76448 -11.63648 -11.30323 -11.21599 -11.08092 -11.04127 -10.82768 -10.61325 -10.50705 -10.41971 -10.27853 -10.19337 -10.05336 -9.56571 -9.12369 -8.51592 -8.35764 -7.48980 -5.96500 -4.00666 3.36243 3.40507 3.42405 3.50535 4.09693 4.45786 4.49385 4.55309 4.56278 4.67970 4.98556 5.08346 5.16958 5.20558 5.29874 5.30491 5.32865 5.34170 5.37121 5.47022 5.51519 5.66745 5.69144 5.79188 5.83326 5.90495 5.94152 5.96949 6.00486 6.04213 6.07212 6.11751 6.16426 6.21302 6.34633 6.37974 6.56206 6.95361 7.05312 7.47780 7.67059 7.85104 8.05083 8.33669 8.84990 9.00956 9.49061 9.66353 11.11229 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.003981 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.492001 B = 7032.389660 C = 7925.603291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.116 3.884 4 N -0.614 5.614 5 C 0.262 3.738 6 C -0.524 4.524 7 H 0.055 0.945 8 C 0.060 3.940 9 N -0.897 5.897 10 Si 0.897 3.103 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.700 3.300 15 O -0.588 6.588 16 N -0.757 5.757 17 C 0.145 3.855 18 C -0.097 4.097 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.112 4.112 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.389 0.611 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.716 -4.251 -18.754 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C -0.009 4.009 4 N -0.349 5.349 5 C 0.143 3.857 6 C -0.563 4.563 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.536 5.536 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.401 3.599 15 O -0.465 6.465 16 N -0.417 5.417 17 C 0.020 3.980 18 C -0.116 4.116 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.150 4.150 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.224 0.776 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.674 -4.293 -18.533 21.814 hybrid contribution -0.306 1.005 0.417 1.130 sum -10.980 -3.288 -18.115 21.437 Atomic orbital electron populations 1.21700 0.95760 1.01369 1.01694 1.22017 0.95378 0.98306 1.02627 1.21368 0.81863 0.95516 1.02122 1.47518 1.05013 1.75890 1.06452 1.19139 0.92197 0.97132 0.77271 1.21456 1.36211 0.92565 1.06046 0.92636 1.24919 0.95471 0.97279 0.96451 1.69920 1.38585 1.30690 1.14391 0.86581 0.78285 0.84903 0.77754 1.20338 1.21236 1.20253 1.15945 0.85457 0.78200 0.80284 1.90880 1.11729 1.57827 1.86112 1.45322 1.09174 1.82382 1.04789 1.21092 0.93722 1.01905 0.81298 1.21399 0.97323 0.98517 0.94396 1.21594 0.97973 0.97417 0.98206 1.21536 0.97831 1.01604 0.94698 1.21545 0.98958 0.97953 0.97309 1.21514 0.98099 0.97793 0.98141 1.21496 0.97746 1.02360 0.93382 0.92491 0.93028 0.92945 0.92376 0.91260 0.89978 0.92615 0.95127 0.93950 0.92763 0.77596 0.92129 0.92151 0.90770 0.91731 0.91865 0.92082 0.92157 0.92352 0.92040 0.92052 0.92093 0.91619 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.14 -2.01 6.26 -26.73 -0.17 -2.18 16 3 C 0.12 1.92 5.18 -4.04 -0.02 1.90 16 4 N -0.61 -13.47 2.46 -180.80 -0.44 -13.91 16 5 C 0.26 7.06 5.16 -5.20 -0.03 7.03 16 6 C -0.52 -15.26 9.38 -34.45 -0.32 -15.58 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 10 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.70 15.51 8.28 -86.92 -0.72 14.79 16 15 O -0.59 -15.90 15.92 5.28 0.08 -15.82 16 16 N -0.76 -12.31 5.15 -65.22 -0.34 -12.64 16 17 C 0.14 2.04 5.07 -4.04 -0.02 2.02 16 18 C -0.10 -0.98 2.22 -90.61 -0.20 -1.19 16 19 C -0.11 -1.06 5.08 -26.74 -0.14 -1.20 16 20 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 21 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 22 C -0.12 -0.90 5.92 -26.74 -0.16 -1.06 16 23 C -0.11 -1.00 5.21 -26.73 -0.14 -1.14 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 30 H 0.06 0.78 6.36 -51.93 -0.33 0.45 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.29 7.42 -51.92 -0.39 0.91 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 34 H 0.39 5.27 5.39 -40.82 -0.22 5.05 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.61 7.19 -51.93 -0.37 0.24 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -33.57 369.67 -10.25 -43.81 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.88 Total: 0.36 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.96 Total: 1.73 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.04 Total: -52.97 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.08 Total: -15.82 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.57 -10.25 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186862776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.715 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds