Wall clock time and date at job start Tue Mar 31 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47089 * 2 1 4 4 H 1.09002 * 109.47006 * 305.41255 * 3 2 1 5 5 C 1.52999 * 109.47054 * 185.41058 * 3 2 1 6 6 C 1.53000 * 109.46922 * 65.00033 * 5 3 2 7 7 C 1.53004 * 109.47114 * 65.00153 * 6 5 3 8 8 C 1.53008 * 109.46859 * 184.99762 * 6 5 3 9 9 C 1.50701 * 109.47228 * 65.41175 * 3 2 1 10 10 O 1.21286 * 119.99815 * 34.60955 * 9 3 2 11 11 N 1.34770 * 120.00091 * 214.61396 * 9 3 2 12 12 C 1.47432 * 125.64761 * 355.04003 * 11 9 3 13 13 C 1.54914 * 104.82934 * 155.89507 * 12 11 9 14 14 C 1.55154 * 101.58643 * 37.00984 * 13 12 11 15 15 H 1.08994 * 110.87154 * 82.92533 * 14 13 12 16 16 N 1.46502 * 110.71998 * 206.13660 * 14 13 12 17 17 C 1.36936 * 119.99578 * 268.51644 * 16 14 13 18 18 H 1.07997 * 120.00326 * 0.02562 * 17 16 14 19 19 C 1.38808 * 119.99787 * 180.02562 * 17 16 14 20 20 N 1.31627 * 119.99917 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00306 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46844 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47565 * 119.99381 * 21 19 17 24 24 H 1.48501 * 109.47301 * 240.00260 * 21 19 17 25 25 C 1.47023 * 125.64980 * 175.06514 * 11 9 3 26 26 H 1.08999 * 109.47087 * 174.79803 * 1 2 3 27 27 H 1.09002 * 109.46887 * 294.80088 * 1 2 3 28 28 H 1.09006 * 109.47236 * 54.80040 * 1 2 3 29 29 H 1.08997 * 109.47141 * 240.00058 * 2 1 3 30 30 H 1.08994 * 109.46991 * 119.99719 * 2 1 3 31 31 H 1.09001 * 109.46922 * 184.99812 * 5 3 2 32 32 H 1.08996 * 109.47401 * 304.99816 * 5 3 2 33 33 H 1.08996 * 109.47274 * 304.99990 * 6 5 3 34 34 H 1.08996 * 109.47026 * 299.99470 * 7 6 5 35 35 H 1.08996 * 109.47184 * 59.99781 * 7 6 5 36 36 H 1.09004 * 109.47002 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.46951 * 60.00239 * 8 6 5 38 38 H 1.09004 * 109.46959 * 179.97438 * 8 6 5 39 39 H 1.09001 * 109.47264 * 299.99702 * 8 6 5 40 40 H 1.09000 * 110.36695 * 274.72661 * 12 11 9 41 41 H 1.08997 * 110.36354 * 37.05662 * 12 11 9 42 42 H 1.09007 * 111.00133 * 155.08416 * 13 12 11 43 43 H 1.09003 * 111.00099 * 278.93270 * 13 12 11 44 44 H 0.96997 * 119.99966 * 88.52188 * 16 14 13 45 45 H 0.96998 * 119.99544 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.88516 * 300.45279 * 25 11 9 47 47 H 1.09001 * 109.87985 * 61.61926 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9836 -0.8376 5 6 3.5639 1.4447 -0.1360 6 6 3.9548 0.8771 -1.5020 7 6 3.4487 1.8088 -2.6052 8 6 5.4781 0.7630 -1.5900 9 6 1.6501 2.1132 1.2920 10 8 1.6199 1.4738 2.3221 11 7 1.3348 3.4235 1.3027 12 6 1.4285 4.3392 0.1510 13 6 0.4226 5.4748 0.4646 14 6 0.5928 5.6269 1.9993 15 1 1.4489 6.2591 2.2342 16 7 -0.6280 6.1641 2.6054 17 6 -0.7768 7.5163 2.7619 18 1 0.0054 8.1868 2.4380 19 6 -1.9332 8.0253 3.3367 20 7 -2.8865 7.2081 3.7318 21 14 -2.1367 9.8699 3.5495 22 1 -0.9315 10.5642 3.0290 23 1 -3.3340 10.3258 2.7986 24 1 -2.3059 10.1863 4.9905 25 6 0.8410 4.1766 2.4648 26 1 -0.3633 -1.0234 -0.0932 27 1 -0.3633 0.4311 0.9329 28 1 -0.3634 0.5924 -0.8398 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9352 2.4656 -0.0470 32 1 3.9999 0.8296 0.6512 33 1 3.5087 -0.1095 -1.6267 34 1 2.3635 1.8901 -2.5425 35 1 3.8947 2.7954 -2.4805 36 1 3.7275 1.4047 -3.5784 37 1 5.8386 0.0993 -0.8042 38 1 5.7565 0.3583 -2.5630 39 1 5.9242 1.7497 -1.4654 40 1 2.4386 4.7399 0.0662 41 1 1.1453 3.8243 -0.7670 42 1 0.6980 6.3943 -0.0521 43 1 -0.5949 5.1762 0.2120 44 1 -1.3307 5.5619 2.8960 45 1 -3.6947 7.5639 4.1332 46 1 -0.0903 3.7376 2.8226 47 1 1.5878 4.1647 3.2587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186902399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:42 Heat of formation + Delta-G solvation = -51.464830 kcal Electronic energy + Delta-G solvation = -23196.689515 eV Core-core repulsion = 19992.623717 eV Total energy + Delta-G solvation = -3204.065798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.18428 -37.84970 -36.77688 -34.11887 -33.73328 -31.52527 -29.70131 -29.41473 -27.72040 -27.41840 -24.72786 -23.68005 -22.90396 -22.02424 -20.10825 -19.84388 -18.64949 -17.41191 -17.23605 -15.93874 -15.44444 -15.29437 -14.64985 -14.54693 -14.01607 -13.93237 -13.59215 -13.48282 -13.26583 -13.07584 -12.88852 -12.51336 -12.45322 -12.29025 -11.91925 -11.79749 -11.73388 -11.49622 -11.39646 -11.20154 -11.06654 -10.87377 -10.84160 -10.72541 -10.63762 -10.51393 -10.29411 -10.07119 -9.78139 -9.43884 -8.98776 -8.35362 -7.05905 -5.83622 -3.14283 2.83719 3.20518 3.39685 3.45378 3.47670 4.40686 4.52467 4.54346 4.64374 4.83722 4.85480 5.01678 5.08709 5.12064 5.24383 5.33064 5.38069 5.38387 5.47341 5.52266 5.55783 5.58562 5.60917 5.63739 5.68347 5.77110 5.80536 5.81129 5.92588 5.97197 5.98531 6.07307 6.13337 6.17043 6.21521 6.25656 6.28883 6.38114 6.58584 6.62930 6.89157 7.64177 7.79472 8.33477 8.40735 9.45266 9.99696 10.34379 11.38638 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.003477 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.393284 B = 8051.687690 C = 8517.102252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.105 4.105 4 H 0.091 0.909 5 C -0.102 4.102 6 C -0.097 4.097 7 C -0.151 4.151 8 C -0.147 4.147 9 C 0.531 3.469 10 O -0.546 6.546 11 N -0.613 5.613 12 C 0.099 3.901 13 C -0.155 4.155 14 C 0.172 3.828 15 H 0.066 0.934 16 N -0.715 5.715 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.099 3.901 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.069 0.931 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.270 -12.703 -13.531 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.147 4.147 3 C -0.127 4.127 4 H 0.109 0.891 5 C -0.140 4.140 6 C -0.115 4.115 7 C -0.208 4.208 8 C -0.205 4.205 9 C 0.319 3.681 10 O -0.424 6.424 11 N -0.346 5.346 12 C -0.024 4.024 13 C -0.197 4.197 14 C 0.060 3.940 15 H 0.084 0.916 16 N -0.356 5.356 17 C -0.376 4.376 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.025 4.025 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.268 -12.912 -12.930 22.581 hybrid contribution -0.505 0.944 0.177 1.085 sum 12.763 -11.967 -12.752 21.650 Atomic orbital electron populations 1.21808 0.95634 1.01638 1.02190 1.21479 0.96157 0.94297 1.02727 1.21451 0.97568 0.97695 0.95939 0.89056 1.21550 0.92988 1.01941 0.97542 1.21173 0.96056 0.99772 0.94540 1.21922 1.01318 0.99602 0.98005 1.21837 0.95269 1.01842 1.01523 1.20265 0.76734 0.80279 0.90790 1.90674 1.53515 1.63567 1.34663 1.48538 1.64865 1.08215 1.13017 1.22399 0.99935 0.91299 0.88793 1.23570 0.98651 0.96617 1.00816 1.21187 0.91662 0.90638 0.90511 0.91585 1.42377 1.16172 1.05079 1.71930 1.19273 1.01441 0.83026 1.33829 0.90891 1.24781 0.96796 0.97888 1.01248 1.69681 1.08170 1.33246 1.46631 0.86099 0.77510 0.84994 0.77436 1.20469 1.21808 1.21793 1.22336 0.99323 0.92927 0.87873 0.92606 0.92329 0.92924 0.91147 0.90720 0.91530 0.91146 0.90700 0.92363 0.92519 0.92785 0.92698 0.92735 0.92656 0.91729 0.91376 0.90581 0.90687 0.77959 0.93398 0.91286 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.65 37.16 0.36 -1.41 16 2 C -0.11 -1.17 5.04 -26.73 -0.13 -1.31 16 3 C -0.11 -1.19 1.68 -91.77 -0.15 -1.34 16 4 H 0.09 0.93 4.60 -51.93 -0.24 0.69 16 5 C -0.10 -0.99 4.13 -26.73 -0.11 -1.10 16 6 C -0.10 -0.74 2.79 -90.61 -0.25 -0.99 16 7 C -0.15 -1.08 8.95 37.16 0.33 -0.75 16 8 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 9 C 0.53 8.28 5.99 -10.99 -0.07 8.22 16 10 O -0.55 -10.55 16.29 5.55 0.09 -10.46 16 11 N -0.61 -9.57 3.33 -170.51 -0.57 -10.14 16 12 C 0.10 1.28 6.72 -2.52 -0.02 1.27 16 13 C -0.16 -2.49 6.77 -24.58 -0.17 -2.66 16 14 C 0.17 3.29 3.61 -66.09 -0.24 3.05 16 15 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 16 N -0.72 -17.46 5.22 -51.65 -0.27 -17.73 16 17 C -0.24 -6.58 9.96 -15.06 -0.15 -6.73 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 21 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.10 1.80 6.62 -3.06 -0.02 1.78 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.82 7.40 -51.93 -0.38 0.44 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.60 6.23 -51.93 -0.32 0.28 16 30 H 0.07 0.92 7.66 -51.93 -0.40 0.52 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.55 6.24 -51.93 -0.32 0.23 16 34 H 0.06 0.42 6.46 -51.93 -0.34 0.09 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.74 6.62 -51.93 -0.34 0.40 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.39 10.17 7.56 -40.82 -0.31 9.86 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.07 1.38 7.72 -51.93 -0.40 0.98 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -30.88 365.96 -8.42 -39.31 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.52 Total: 6.65 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.37 Total: -3.06 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.11 Total: -54.86 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.88 -8.42 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186902399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.159 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds