Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46867 * 2 1 4 4 H 1.09003 * 109.46553 * 182.43882 * 3 2 1 5 5 C 1.53000 * 109.46710 * 302.43196 * 3 2 1 6 6 C 1.52997 * 109.47693 * 295.64486 * 5 3 2 7 7 C 1.52996 * 109.47214 * 173.51759 * 6 5 3 8 8 C 1.53004 * 109.47019 * 293.51939 * 6 5 3 9 9 C 1.50696 * 109.47247 * 62.43851 * 3 2 1 10 10 O 1.21290 * 119.99382 * 247.75166 * 9 3 2 11 11 N 1.34766 * 120.00325 * 67.75223 * 9 3 2 12 12 C 1.47027 * 125.64948 * 4.23807 * 11 9 3 13 13 C 1.54319 * 107.27215 * 181.02007 * 12 11 9 14 14 C 1.55160 * 102.94316 * 22.19260 * 13 12 11 15 15 H 1.08992 * 111.00634 * 82.61206 * 14 13 12 16 16 N 1.46506 * 111.00331 * 206.42405 * 14 13 12 17 17 C 1.36937 * 119.99717 * 273.54771 * 16 14 13 18 18 H 1.07999 * 120.00062 * 359.97438 * 17 16 14 19 19 C 1.38813 * 119.99572 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99828 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00249 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47245 * 89.99706 * 21 19 17 23 23 H 1.48502 * 109.47234 * 209.99799 * 21 19 17 24 24 H 1.48501 * 109.47153 * 330.00047 * 21 19 17 25 25 C 1.47425 * 125.65102 * 183.92458 * 11 9 3 26 26 H 1.09005 * 109.47038 * 179.72010 * 1 2 3 27 27 H 1.09004 * 109.47525 * 59.72158 * 1 2 3 28 28 H 1.09002 * 109.47615 * 299.72265 * 1 2 3 29 29 H 1.09006 * 109.47117 * 119.99582 * 2 1 3 30 30 H 1.08997 * 109.47218 * 239.99723 * 2 1 3 31 31 H 1.09002 * 109.46902 * 55.65199 * 5 3 2 32 32 H 1.09008 * 109.46699 * 175.64039 * 5 3 2 33 33 H 1.08998 * 109.47176 * 53.51619 * 6 5 3 34 34 H 1.09009 * 109.46921 * 60.00245 * 7 6 5 35 35 H 1.09003 * 109.47024 * 179.97438 * 7 6 5 36 36 H 1.08993 * 109.47290 * 299.99898 * 7 6 5 37 37 H 1.08999 * 109.46855 * 180.02562 * 8 6 5 38 38 H 1.08998 * 109.46885 * 299.99858 * 8 6 5 39 39 H 1.09000 * 109.46765 * 59.99688 * 8 6 5 40 40 H 1.09001 * 109.87805 * 300.43728 * 12 11 9 41 41 H 1.09002 * 109.88125 * 61.60014 * 12 11 9 42 42 H 1.09001 * 110.71932 * 140.55463 * 13 12 11 43 43 H 1.08999 * 110.72204 * 263.82384 * 13 12 11 44 44 H 0.96999 * 120.00069 * 93.54491 * 16 14 13 45 45 H 0.96999 * 119.99941 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.36660 * 274.74955 * 25 11 9 47 47 H 1.09005 * 110.36394 * 37.06847 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1291 1.4428 -0.0437 5 6 1.4805 2.1812 -1.2175 6 6 2.0273 1.5439 -2.4965 7 6 1.3456 2.1745 -3.7123 8 6 3.5368 1.7798 -2.5786 9 6 1.5875 2.1353 1.2595 10 8 0.7757 3.0344 1.1989 11 7 2.0850 1.7559 2.4532 12 6 3.1338 0.7470 2.6629 13 6 3.3577 0.6285 4.1851 14 6 2.0271 1.1660 4.7751 15 1 1.2628 0.3891 4.7865 16 7 2.2323 1.7167 6.1171 17 6 2.1783 0.8939 7.2104 18 1 1.9842 -0.1609 7.0833 19 6 2.3722 1.4158 8.4820 20 7 2.3198 0.6250 9.5329 21 14 2.7073 3.2402 8.7017 22 1 1.4211 3.9629 8.8714 23 1 3.5535 3.4467 9.9045 24 1 3.4137 3.7616 7.5040 25 6 1.6723 2.2883 3.7645 26 1 -0.3633 -1.0277 -0.0050 27 1 -0.3634 0.5182 -0.8875 28 1 -0.3634 0.5095 0.8924 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 0.3925 2.1143 -1.2147 32 1 1.7802 3.2284 -1.1765 33 1 1.8273 0.4725 -2.4828 34 1 1.5458 3.2460 -3.7260 35 1 1.7356 1.7208 -4.6235 36 1 0.2703 2.0064 -3.6538 37 1 3.9263 1.3262 -3.4900 38 1 3.7369 2.8512 -2.5923 39 1 4.0224 1.3305 -1.7124 40 1 2.8106 -0.2129 2.2599 41 1 4.0560 1.0643 2.1760 42 1 3.5146 -0.4113 4.4720 43 1 4.1975 1.2476 4.5007 44 1 2.4063 2.6641 6.2312 45 1 2.4557 0.9896 10.4214 46 1 2.2254 3.1987 3.9954 47 1 0.5997 2.4821 3.7747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186902400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = -43.488969 kcal Electronic energy + Delta-G solvation = -23229.040724 eV Core-core repulsion = 20025.320786 eV Total energy + Delta-G solvation = -3203.719938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35934 -38.01741 -36.80534 -34.40513 -33.79829 -31.58474 -29.86594 -29.17784 -28.11319 -27.41673 -25.25673 -23.75764 -22.84645 -21.89888 -20.23017 -19.74739 -18.62924 -17.73842 -16.88456 -16.18817 -15.95134 -15.64359 -14.69122 -14.36015 -14.22464 -14.02502 -13.66208 -13.54969 -13.31143 -13.21052 -12.66145 -12.58182 -12.44752 -12.38117 -12.13430 -11.99479 -11.87293 -11.64637 -11.45722 -11.39669 -11.04387 -10.93008 -10.83454 -10.71252 -10.63223 -10.55826 -10.38164 -10.08644 -9.67214 -9.54508 -9.00569 -8.46225 -7.37713 -5.84292 -3.21890 2.75079 3.09434 3.34106 3.37537 3.42583 4.38186 4.48148 4.53099 4.63391 4.78841 4.85560 4.91832 4.96941 4.99163 5.18940 5.23540 5.27697 5.31302 5.37943 5.44002 5.48617 5.52123 5.59357 5.60825 5.63279 5.67197 5.77301 5.83650 5.84788 5.86170 5.87179 5.95018 6.03792 6.11013 6.12731 6.18724 6.26832 6.31850 6.47827 6.51221 6.77839 7.68776 7.89648 8.29455 8.34203 9.10868 9.83337 10.01610 11.33449 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034822 B = 0.003386 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.885156 B = 8268.191380 C = 8409.567112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.104 4.104 4 H 0.093 0.907 5 C -0.098 4.098 6 C -0.099 4.099 7 C -0.147 4.147 8 C -0.150 4.150 9 C 0.532 3.468 10 O -0.546 6.546 11 N -0.613 5.613 12 C 0.098 3.902 13 C -0.154 4.154 14 C 0.177 3.823 15 H 0.072 0.928 16 N -0.739 5.739 17 C -0.248 4.248 18 H 0.092 0.908 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.096 3.904 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.363 0.637 45 H 0.261 0.739 46 H 0.064 0.936 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.629 -0.688 -24.996 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.126 4.126 4 H 0.111 0.889 5 C -0.135 4.135 6 C -0.118 4.118 7 C -0.204 4.204 8 C -0.207 4.207 9 C 0.321 3.679 10 O -0.424 6.424 11 N -0.347 5.347 12 C -0.025 4.025 13 C -0.195 4.195 14 C 0.066 3.934 15 H 0.090 0.910 16 N -0.381 5.381 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.188 4.188 20 N -0.577 5.577 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.027 4.027 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.197 0.803 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.129 -0.376 -24.905 24.934 hybrid contribution 0.477 1.255 0.418 1.406 sum 1.606 0.879 -24.487 24.556 Atomic orbital electron populations 1.21860 0.95305 1.01657 1.02528 1.21612 0.96890 0.94234 1.02922 1.21380 1.01875 0.96412 0.92884 0.88863 1.21526 1.01406 0.99218 0.91377 1.21190 0.95396 1.00458 0.94714 1.21823 1.00418 1.00873 0.97274 1.21911 0.95553 1.01784 1.01499 1.20286 0.80984 0.82922 0.83723 1.90684 1.34483 1.30752 1.86461 1.48446 1.39527 1.40815 1.05936 1.22230 0.90148 0.91475 0.98678 1.23377 1.01664 1.02983 0.91515 1.21309 0.94365 0.93496 0.84226 0.91035 1.42615 1.86706 1.07513 1.01305 1.19021 1.42048 0.92817 0.83916 0.89015 1.24672 1.01484 0.97315 0.95323 1.69697 1.56022 1.34132 0.97890 0.86570 0.78165 0.86658 0.77240 1.20909 1.21637 1.20271 1.22557 1.00725 0.97572 0.81853 0.92588 0.92116 0.92546 0.90932 0.90751 0.90623 0.91481 0.90821 0.92721 0.92849 0.92685 0.92864 0.92711 0.92511 0.91303 0.92061 0.90258 0.90672 0.80331 0.92914 0.91752 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.29 37.16 0.35 -1.22 16 2 C -0.12 -1.08 5.31 -26.73 -0.14 -1.22 16 3 C -0.10 -1.09 1.78 -91.77 -0.16 -1.26 16 4 H 0.09 0.86 6.32 -51.93 -0.33 0.54 16 5 C -0.10 -0.98 3.16 -26.73 -0.08 -1.06 16 6 C -0.10 -0.76 2.79 -90.62 -0.25 -1.01 16 7 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 8 C -0.15 -1.08 8.98 37.16 0.33 -0.74 16 9 C 0.53 7.76 5.97 -10.99 -0.07 7.70 16 10 O -0.55 -9.91 16.30 5.55 0.09 -9.82 16 11 N -0.61 -8.93 3.32 -170.38 -0.57 -9.50 16 12 C 0.10 1.20 6.19 -3.06 -0.02 1.18 16 13 C -0.15 -2.37 6.64 -24.90 -0.17 -2.54 16 14 C 0.18 3.25 3.70 -65.66 -0.24 3.00 16 15 H 0.07 1.36 8.13 -51.93 -0.42 0.93 16 16 N -0.74 -16.81 5.08 -51.23 -0.26 -17.08 16 17 C -0.25 -6.75 10.47 -15.06 -0.16 -6.91 16 18 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 19 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 20 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 21 Si 0.88 21.70 27.73 -169.99 -4.71 16.99 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 25 C 0.10 1.62 6.51 -2.41 -0.02 1.60 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.58 6.27 -51.93 -0.33 0.25 16 28 H 0.06 0.71 7.30 -51.93 -0.38 0.33 16 29 H 0.07 0.67 5.37 -51.93 -0.28 0.39 16 30 H 0.07 0.54 6.53 -51.93 -0.34 0.20 16 31 H 0.08 0.84 6.12 -51.93 -0.32 0.52 16 32 H 0.07 0.76 8.08 -51.92 -0.42 0.34 16 33 H 0.07 0.53 6.31 -51.93 -0.33 0.20 16 34 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.40 6.53 -51.93 -0.34 0.06 16 40 H 0.07 0.73 5.68 -51.93 -0.30 0.43 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.36 8.20 5.57 -40.82 -0.23 7.98 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.06 1.10 8.00 -51.93 -0.42 0.69 16 47 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -31.42 356.57 -7.92 -39.33 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.23 Total: 5.58 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.38 Total: -3.05 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.05 Total: -54.41 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.42 -7.92 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186902400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.157 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds