Wall clock time and date at job start Tue Mar 31 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47095 * 2 1 4 4 H 1.09004 * 109.46921 * 185.06462 * 3 2 1 5 5 C 1.52991 * 109.47582 * 65.05960 * 3 2 1 6 6 C 1.50703 * 109.47193 * 65.00187 * 5 3 2 7 7 O 1.21283 * 119.99631 * 359.72154 * 6 5 3 8 8 N 1.34773 * 120.00334 * 180.02562 * 6 5 3 9 9 C 1.47424 * 125.64810 * 359.68338 * 8 6 5 10 10 C 1.55123 * 104.72359 * 155.82037 * 9 8 6 11 11 C 1.55161 * 101.48545 * 37.29966 * 10 9 8 12 12 H 1.08997 * 110.72057 * 82.69397 * 11 10 9 13 13 N 1.46504 * 110.72122 * 205.96936 * 11 10 9 14 14 C 1.36940 * 119.99606 * 268.52202 * 13 11 10 15 15 H 1.07997 * 120.00336 * 359.97438 * 14 13 11 16 16 C 1.38812 * 119.99510 * 180.02562 * 14 13 11 17 17 N 1.31620 * 120.00151 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99567 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47043 * 90.00250 * 18 16 14 20 20 H 1.48501 * 109.46905 * 209.99740 * 18 16 14 21 21 H 1.48495 * 109.47361 * 329.99808 * 18 16 14 22 22 C 1.47018 * 125.65130 * 180.02562 * 8 6 5 23 23 C 1.53000 * 109.46641 * 305.05843 * 3 2 1 24 24 C 1.53004 * 109.46769 * 185.26453 * 23 3 2 25 25 C 1.52992 * 109.47456 * 305.26513 * 23 3 2 26 26 H 1.09000 * 109.47295 * 181.10025 * 1 2 3 27 27 H 1.09005 * 109.46942 * 301.09759 * 1 2 3 28 28 H 1.08997 * 109.47312 * 61.09676 * 1 2 3 29 29 H 1.08995 * 109.46923 * 239.99427 * 2 1 3 30 30 H 1.09008 * 109.46686 * 119.99485 * 2 1 3 31 31 H 1.09003 * 109.47247 * 305.00212 * 5 3 2 32 32 H 1.09001 * 109.47781 * 184.99828 * 5 3 2 33 33 H 1.09000 * 110.37279 * 274.75312 * 9 8 6 34 34 H 1.09007 * 110.36736 * 37.07327 * 9 8 6 35 35 H 1.08996 * 111.20012 * 279.19599 * 10 9 8 36 36 H 1.09008 * 110.94242 * 155.28732 * 10 9 8 37 37 H 0.96994 * 119.99712 * 88.51964 * 13 11 10 38 38 H 0.97005 * 119.99942 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.88176 * 300.43359 * 22 8 6 40 40 H 1.08995 * 109.88788 * 61.43984 * 22 8 6 41 41 H 1.08999 * 109.47422 * 65.26693 * 23 3 2 42 42 H 1.08999 * 109.47174 * 60.00457 * 24 23 3 43 43 H 1.08998 * 109.47293 * 180.02562 * 24 23 3 44 44 H 1.09001 * 109.47475 * 299.99867 * 24 23 3 45 45 H 1.08999 * 109.47160 * 64.39269 * 25 23 3 46 46 H 1.09001 * 109.47330 * 184.39333 * 25 23 3 47 47 H 1.09007 * 109.46993 * 304.39110 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 -0.0907 5 6 1.6366 2.1261 1.3079 6 6 2.3368 1.4559 2.4618 7 8 3.0808 0.5199 2.2586 8 7 2.1313 1.8925 3.7202 9 6 1.2573 3.0144 4.1084 10 6 0.8760 2.7249 5.5839 11 6 2.1998 2.1316 6.1345 12 1 2.8907 2.9262 6.4162 13 7 1.9373 1.2442 7.2702 14 6 1.9479 1.7429 8.5455 15 1 2.1501 2.7903 8.7141 16 6 1.6997 0.9020 9.6216 17 7 1.4538 -0.3746 9.4162 18 14 1.7149 1.5822 11.3613 19 1 0.3504 2.0417 11.7250 20 1 2.1471 0.5197 12.3045 21 1 2.6591 2.7258 11.4375 22 6 2.7472 1.3334 4.9325 23 6 1.4288 2.1994 -1.1808 24 6 2.0379 3.6008 -1.2585 25 6 1.7219 1.4433 -2.4781 26 1 -0.3634 -1.0275 0.0197 27 1 -0.3633 0.5308 0.8800 28 1 -0.3634 0.4967 -0.8996 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.5578 2.0466 1.4417 32 1 1.9217 3.1776 1.2713 33 1 1.7958 3.9590 4.0317 34 1 0.3646 3.0339 3.4832 35 1 0.0663 1.9978 5.6464 36 1 0.6132 3.6449 6.1062 37 1 1.7560 0.3034 7.1188 38 1 1.2807 -0.9624 10.1683 39 1 2.4791 0.2816 5.0332 40 1 3.8310 1.4359 4.8789 41 1 0.3505 2.2791 -1.0424 42 1 3.1161 3.5212 -1.3970 43 1 1.6021 4.1403 -2.0995 44 1 1.8290 4.1396 -0.3343 45 1 1.2225 0.4747 -2.4549 46 1 1.3547 2.0211 -3.3264 47 1 2.7973 1.2954 -2.5774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187209264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:19 Heat of formation + Delta-G solvation = -47.198226 kcal Electronic energy + Delta-G solvation = -22994.972293 eV Core-core repulsion = 19791.091509 eV Total energy + Delta-G solvation = -3203.880784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12454 -38.29127 -36.87721 -34.12573 -32.50491 -31.64446 -30.24815 -29.46814 -27.74359 -27.07364 -25.18336 -23.52622 -22.75436 -22.26545 -20.09590 -19.26696 -18.62278 -17.40746 -16.87714 -16.09669 -15.72912 -15.13994 -14.88142 -14.73155 -14.22255 -13.75787 -13.54065 -13.45210 -13.21304 -12.80389 -12.66458 -12.55058 -12.38471 -12.29046 -12.00994 -11.76446 -11.68357 -11.65152 -11.40987 -11.19133 -11.01921 -10.86653 -10.71749 -10.51514 -10.42172 -10.35039 -10.31737 -10.09877 -9.77809 -9.43755 -8.98298 -8.34823 -7.06050 -5.83443 -3.14186 2.85164 3.21446 3.39863 3.45251 3.47056 4.49493 4.53478 4.59876 4.67582 4.88118 4.94592 5.04288 5.17570 5.24446 5.30541 5.33536 5.40225 5.41008 5.46040 5.49609 5.54025 5.57099 5.60484 5.65333 5.72095 5.78773 5.87552 5.90828 5.94040 5.96952 6.03778 6.11407 6.13439 6.22750 6.27015 6.37602 6.38813 6.50781 6.59093 6.62993 6.89111 7.63603 7.79811 8.33649 8.40872 9.45325 9.99793 10.34472 11.38734 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.003082 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.182225 B = 9083.639258 C = 9360.504940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.128 4.128 3 C -0.064 4.064 4 H 0.076 0.924 5 C -0.136 4.136 6 C 0.524 3.476 7 O -0.544 6.544 8 N -0.615 5.615 9 C 0.099 3.901 10 C -0.155 4.155 11 C 0.172 3.828 12 H 0.066 0.934 13 N -0.715 5.715 14 C -0.245 4.245 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.099 3.901 23 C -0.094 4.094 24 C -0.151 4.151 25 C -0.148 4.148 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.050 0.950 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 7.658 -21.631 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.165 4.165 3 C -0.083 4.083 4 H 0.095 0.905 5 C -0.176 4.176 6 C 0.313 3.687 7 O -0.422 6.422 8 N -0.349 5.349 9 C -0.025 4.025 10 C -0.196 4.196 11 C 0.060 3.940 12 H 0.084 0.916 13 N -0.355 5.355 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.207 4.207 17 N -0.577 5.577 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.024 4.024 23 C -0.112 4.112 24 C -0.208 4.208 25 C -0.205 4.205 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.676 7.200 -21.620 22.849 hybrid contribution -0.198 0.118 1.033 1.058 sum -1.874 7.317 -20.587 21.929 Atomic orbital electron populations 1.21908 0.96573 1.01384 1.01422 1.21704 0.95290 0.96221 1.03301 1.20958 1.00804 0.94797 0.91775 0.90526 1.21826 1.01658 1.00844 0.93243 1.20340 0.82041 0.83675 0.82662 1.90655 1.38484 1.28918 1.84124 1.48552 1.46365 1.33957 1.06009 1.22422 0.93295 0.89206 0.97552 1.23606 1.01529 1.02100 0.92412 1.21181 0.93410 0.92724 0.86702 0.91608 1.42369 1.84058 1.08201 1.00921 1.19225 1.41291 0.94018 0.83111 0.90955 1.24782 1.02256 0.95565 0.98087 1.69668 1.54319 1.03343 1.30406 0.86167 0.77644 0.77683 0.84521 1.21641 1.21717 1.20678 1.22321 0.97316 0.98940 0.83838 1.21195 1.00363 0.94832 0.94842 1.21922 1.01003 0.96369 1.01521 1.21876 1.01735 1.00337 0.96524 0.93110 0.92902 0.92711 0.92140 0.89897 0.88945 0.89114 0.91709 0.91413 0.90675 0.90606 0.77941 0.93338 0.91268 0.91843 0.90934 0.92692 0.92886 0.92523 0.92239 0.93060 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.05 37.16 0.34 -1.19 16 2 C -0.13 -1.44 4.90 -26.73 -0.13 -1.57 16 3 C -0.06 -0.67 1.40 -90.62 -0.13 -0.80 16 4 H 0.08 0.92 7.96 -51.93 -0.41 0.50 16 5 C -0.14 -1.47 3.91 -27.89 -0.11 -1.58 16 6 C 0.52 7.94 7.53 -10.99 -0.08 7.86 16 7 O -0.54 -10.09 14.31 5.55 0.08 -10.01 16 8 N -0.61 -9.45 3.32 -170.39 -0.57 -10.01 16 9 C 0.10 1.26 6.70 -2.41 -0.02 1.24 16 10 C -0.16 -2.48 6.78 -24.46 -0.17 -2.65 16 11 C 0.17 3.28 3.61 -66.09 -0.24 3.04 16 12 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 13 N -0.72 -17.46 5.22 -51.65 -0.27 -17.73 16 14 C -0.25 -6.60 9.96 -15.06 -0.15 -6.75 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 18 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.10 1.79 6.62 -3.07 -0.02 1.77 16 23 C -0.09 -0.76 1.91 -90.62 -0.17 -0.93 16 24 C -0.15 -1.12 8.96 37.16 0.33 -0.79 16 25 C -0.15 -1.12 8.44 37.15 0.31 -0.81 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.53 6.41 -51.93 -0.33 0.20 16 28 H 0.05 0.46 5.96 -51.93 -0.31 0.15 16 29 H 0.06 0.63 6.75 -51.93 -0.35 0.28 16 30 H 0.08 1.20 5.87 -51.92 -0.30 0.90 16 31 H 0.09 0.90 6.04 -51.93 -0.31 0.59 16 32 H 0.09 0.83 6.35 -51.93 -0.33 0.50 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.72 7.48 -51.92 -0.39 0.33 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 37 H 0.39 10.18 7.56 -40.82 -0.31 9.87 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.07 1.38 7.72 -51.93 -0.40 0.98 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 0.57 6.69 -51.93 -0.35 0.22 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.40 6.47 -51.93 -0.34 0.07 16 45 H 0.06 0.46 6.13 -51.93 -0.32 0.14 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -30.55 356.96 -8.23 -38.78 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.22 Total: 7.24 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.33 Total: -3.55 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.11 Total: -54.75 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.55 -8.23 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187209264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.422 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds