Wall clock time and date at job start Tue Mar 31 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47095 * 2 1 4 4 H 1.09004 * 109.46921 * 185.06462 * 3 2 1 5 5 C 1.52991 * 109.47582 * 65.05960 * 3 2 1 6 6 C 1.50703 * 109.47193 * 65.00187 * 5 3 2 7 7 O 1.21283 * 119.99631 * 359.72154 * 6 5 3 8 8 N 1.34773 * 120.00334 * 180.02562 * 6 5 3 9 9 C 1.47424 * 125.64810 * 359.68338 * 8 6 5 10 10 C 1.55123 * 104.72359 * 155.82037 * 9 8 6 11 11 C 1.55161 * 101.48545 * 37.29966 * 10 9 8 12 12 H 1.08997 * 110.72057 * 82.69397 * 11 10 9 13 13 N 1.46504 * 110.72122 * 205.96936 * 11 10 9 14 14 C 1.36940 * 119.99606 * 268.52202 * 13 11 10 15 15 H 1.07997 * 120.00336 * 359.97438 * 14 13 11 16 16 C 1.38812 * 119.99510 * 180.02562 * 14 13 11 17 17 N 1.31620 * 120.00151 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99567 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47043 * 90.00250 * 18 16 14 20 20 H 1.48501 * 109.46905 * 209.99740 * 18 16 14 21 21 H 1.48495 * 109.47361 * 329.99808 * 18 16 14 22 22 C 1.47018 * 125.65130 * 180.02562 * 8 6 5 23 23 C 1.53000 * 109.46641 * 305.05843 * 3 2 1 24 24 C 1.53004 * 109.46769 * 185.26453 * 23 3 2 25 25 C 1.52992 * 109.47456 * 305.26513 * 23 3 2 26 26 H 1.09000 * 109.47295 * 181.10025 * 1 2 3 27 27 H 1.09005 * 109.46942 * 301.09759 * 1 2 3 28 28 H 1.08997 * 109.47312 * 61.09676 * 1 2 3 29 29 H 1.08995 * 109.46923 * 239.99427 * 2 1 3 30 30 H 1.09008 * 109.46686 * 119.99485 * 2 1 3 31 31 H 1.09003 * 109.47247 * 305.00212 * 5 3 2 32 32 H 1.09001 * 109.47781 * 184.99828 * 5 3 2 33 33 H 1.09000 * 110.37279 * 274.75312 * 9 8 6 34 34 H 1.09007 * 110.36736 * 37.07327 * 9 8 6 35 35 H 1.08996 * 111.20012 * 279.19599 * 10 9 8 36 36 H 1.09008 * 110.94242 * 155.28732 * 10 9 8 37 37 H 0.96994 * 119.99712 * 88.51964 * 13 11 10 38 38 H 0.97005 * 119.99942 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.88176 * 300.43359 * 22 8 6 40 40 H 1.08995 * 109.88788 * 61.43984 * 22 8 6 41 41 H 1.08999 * 109.47422 * 65.26693 * 23 3 2 42 42 H 1.08999 * 109.47174 * 60.00457 * 24 23 3 43 43 H 1.08998 * 109.47293 * 180.02562 * 24 23 3 44 44 H 1.09001 * 109.47475 * 299.99867 * 24 23 3 45 45 H 1.08999 * 109.47160 * 64.39269 * 25 23 3 46 46 H 1.09001 * 109.47330 * 184.39333 * 25 23 3 47 47 H 1.09007 * 109.46993 * 304.39110 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 -0.0907 5 6 1.6366 2.1261 1.3079 6 6 2.3368 1.4559 2.4618 7 8 3.0808 0.5199 2.2586 8 7 2.1313 1.8925 3.7202 9 6 1.2573 3.0144 4.1084 10 6 0.8760 2.7249 5.5839 11 6 2.1998 2.1316 6.1345 12 1 2.8907 2.9262 6.4162 13 7 1.9373 1.2442 7.2702 14 6 1.9479 1.7429 8.5455 15 1 2.1501 2.7903 8.7141 16 6 1.6997 0.9020 9.6216 17 7 1.4538 -0.3746 9.4162 18 14 1.7149 1.5822 11.3613 19 1 0.3504 2.0417 11.7250 20 1 2.1471 0.5197 12.3045 21 1 2.6591 2.7258 11.4375 22 6 2.7472 1.3334 4.9325 23 6 1.4288 2.1994 -1.1808 24 6 2.0379 3.6008 -1.2585 25 6 1.7219 1.4433 -2.4781 26 1 -0.3634 -1.0275 0.0197 27 1 -0.3633 0.5308 0.8800 28 1 -0.3634 0.4967 -0.8996 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.5578 2.0466 1.4417 32 1 1.9217 3.1776 1.2713 33 1 1.7958 3.9590 4.0317 34 1 0.3646 3.0339 3.4832 35 1 0.0663 1.9978 5.6464 36 1 0.6132 3.6449 6.1062 37 1 1.7560 0.3034 7.1188 38 1 1.2807 -0.9624 10.1683 39 1 2.4791 0.2816 5.0332 40 1 3.8310 1.4359 4.8789 41 1 0.3505 2.2791 -1.0424 42 1 3.1161 3.5212 -1.3970 43 1 1.6021 4.1403 -2.0995 44 1 1.8290 4.1396 -0.3343 45 1 1.2225 0.4747 -2.4549 46 1 1.3547 2.0211 -3.3264 47 1 2.7973 1.2954 -2.5774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187209264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:18 Heat of formation + Delta-G solvation = -65.394424 kcal Electronic energy + Delta-G solvation = -22995.761339 eV Core-core repulsion = 19791.091509 eV Total energy + Delta-G solvation = -3204.669830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28869 -39.36984 -38.07079 -35.91250 -33.40996 -33.20398 -31.43372 -30.78871 -29.18355 -27.69557 -26.33498 -25.24441 -23.97249 -23.08370 -21.60119 -20.32021 -19.55228 -19.34725 -18.05648 -17.35546 -16.80650 -16.50158 -16.07215 -15.82824 -15.39688 -15.32460 -14.82911 -14.66284 -14.30730 -14.13519 -13.62582 -13.57497 -13.22341 -13.19623 -13.12767 -13.01613 -12.97054 -12.72831 -12.67897 -12.39897 -12.33979 -12.14358 -12.12240 -11.75351 -11.70338 -11.67942 -11.35982 -11.19987 -11.12579 -10.94359 -10.61646 -9.63451 -9.05596 -7.95625 -5.26226 1.48783 1.50533 1.58897 1.67202 2.00670 2.56820 3.35719 3.53092 3.77097 3.80990 3.85631 3.93886 4.00070 4.21011 4.25987 4.28632 4.40305 4.43004 4.52370 4.53197 4.58369 4.63428 4.68358 4.73268 4.85305 4.87266 4.88179 5.00632 5.04492 5.09618 5.14538 5.19095 5.21676 5.24556 5.29366 5.35221 5.38810 5.44926 5.51010 5.53100 5.61945 5.69518 6.24762 6.60861 7.20603 7.30928 8.02869 8.26605 9.28007 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.003082 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.182225 B = 9083.639258 C = 9360.504940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.061 4.061 4 H 0.055 0.945 5 C -0.126 4.126 6 C 0.517 3.483 7 O -0.586 6.586 8 N -0.617 5.617 9 C 0.106 3.894 10 C -0.146 4.146 11 C 0.165 3.835 12 H 0.072 0.928 13 N -0.732 5.732 14 C -0.239 4.239 15 H 0.084 0.916 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.976 3.024 19 H -0.285 1.285 20 H -0.300 1.300 21 H -0.266 1.266 22 C 0.108 3.892 23 C -0.087 4.087 24 C -0.151 4.151 25 C -0.148 4.148 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.038 0.962 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 10.733 -23.195 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.080 4.080 4 H 0.073 0.927 5 C -0.165 4.165 6 C 0.308 3.692 7 O -0.467 6.467 8 N -0.351 5.351 9 C -0.016 4.016 10 C -0.187 4.187 11 C 0.055 3.945 12 H 0.090 0.910 13 N -0.371 5.371 14 C -0.371 4.371 15 H 0.102 0.898 16 C -0.269 4.269 17 N -0.623 5.623 18 Si 0.805 3.195 19 H -0.212 1.212 20 H -0.227 1.227 21 H -0.191 1.191 22 C -0.016 4.016 23 C -0.105 4.105 24 C -0.208 4.208 25 C -0.206 4.206 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.844 10.350 -23.228 25.588 hybrid contribution 0.221 -0.851 1.425 1.674 sum -2.623 9.499 -21.803 23.926 Atomic orbital electron populations 1.21878 0.95097 1.01507 1.02346 1.21641 0.96540 0.96740 1.01539 1.20923 0.99701 0.94514 0.92885 0.92658 1.21889 1.02062 1.01619 0.90924 1.21250 0.81534 0.83138 0.83294 1.90648 1.40431 1.30869 1.84717 1.48666 1.46561 1.34580 1.05271 1.22588 0.94477 0.89110 0.95416 1.23405 0.98587 1.01782 0.94884 1.21394 0.95427 0.92138 0.85510 0.91014 1.42562 1.84465 1.08221 1.01842 1.19659 1.38937 0.94400 0.84104 0.89769 1.25624 1.03318 0.95909 1.02096 1.69841 1.56698 1.04743 1.30995 0.85104 0.77818 0.77016 0.79585 1.21247 1.22697 1.19094 1.21978 0.97086 0.97332 0.85229 1.21152 1.00818 0.94932 0.93615 1.21929 1.00583 0.95854 1.02455 1.21884 1.01316 1.00476 0.96880 0.93508 0.92998 0.90603 0.91856 0.93762 0.86984 0.86441 0.88719 0.88020 0.92648 0.89157 0.79724 0.94069 0.94305 0.92539 0.89687 0.93442 0.91667 0.91789 0.92446 0.91702 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.05 71.98 0.65 -2.05 16 2 C -0.13 -2.82 4.90 30.60 0.15 -2.67 16 3 C -0.06 -1.18 1.40 -10.80 -0.02 -1.20 16 4 H 0.05 1.31 7.96 -2.38 -0.02 1.29 16 5 C -0.13 -2.37 3.91 29.85 0.12 -2.25 16 6 C 0.52 15.24 7.53 87.66 0.66 15.90 16 7 O -0.59 -22.42 14.31 -3.04 -0.04 -22.46 16 8 N -0.62 -18.18 3.32 -811.37 -2.70 -20.88 16 9 C 0.11 2.32 6.70 86.93 0.58 2.90 16 10 C -0.15 -4.38 6.78 32.06 0.22 -4.16 16 11 C 0.16 6.24 3.61 46.18 0.17 6.41 16 12 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 13 N -0.73 -36.41 5.22 -317.32 -1.66 -38.07 16 14 C -0.24 -12.89 9.96 84.03 0.84 -12.06 16 15 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 16 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 17 N -0.97 -59.74 13.06 21.65 0.28 -59.45 16 18 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 22 C 0.11 3.98 6.62 86.73 0.57 4.56 16 23 C -0.09 -1.15 1.91 -10.79 -0.02 -1.17 16 24 C -0.15 -1.73 8.96 71.98 0.64 -1.09 16 25 C -0.15 -1.93 8.44 71.98 0.61 -1.32 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.93 6.41 -2.38 -0.02 0.92 16 28 H 0.08 1.04 5.96 -2.39 -0.01 1.02 16 29 H 0.06 1.32 6.75 -2.39 -0.02 1.31 16 30 H 0.04 1.34 5.87 -2.38 -0.01 1.32 16 31 H 0.11 1.74 6.04 -2.39 -0.01 1.72 16 32 H 0.12 1.64 6.35 -2.39 -0.02 1.62 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.10 1.63 7.48 -2.38 -0.02 1.61 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 36 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.37 20.44 7.56 -92.71 -0.70 19.74 16 38 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 39 H 0.04 1.65 7.72 -2.38 -0.02 1.63 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.08 0.96 6.69 -2.39 -0.02 0.95 16 42 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.06 0.64 6.47 -2.39 -0.02 0.63 16 45 H 0.06 0.77 6.13 -2.39 -0.01 0.75 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -69.18 356.96 3.79 -65.39 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.24 Total: 30.20 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 5.64 Total: -2.13 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -4.07 Total: -118.40 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.04 Total: -22.46 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.18 3.79 -65.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187209264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.009 kcal (2) G-P(sol) polarization free energy of solvation -69.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds